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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033982 | AL358234 | 32709080 | 2 | chr10 | NT_033982 | AL161936 | 32810996 | 3 | 82731 | 0 | 0 | 82731 |
| S/G/Y/R/B/O |
NT_033982 | AL358234 | 32709080 | 2 | chr10 | NT_033227 | AC022021 | 29289324 | 3 | 35014 | 0 | 0 | 35014 |
| S/G/Y/R/B/O |
NT_033982 | AL358234 | 32709080 | 2 |   |   | AC005876 | 33416446 | 3 | 77233 | 0 | 0 | 77233 |
| S/G/Y/R/B/O |
NT_033982 | AL358234 | 32709080 | 2 |   |   | AL445311 | 32810996 | 1 | 168081 | 0 | 5019 | 173100 |
| S/G/Y/R/B/O |
NT_033982 | AL161936 | 32810996 | 3 | chr10 | NT_033982 | AL355376 | 32966580 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033982 | AL161936 | 32810996 | 3 |   |   | AC005876 | 32810996 | 3 | 89636 | 0 | 0 | 89636 |
| S/G/Y/R/B/O |
NT_033982 | AL161936 | 32810996 | 3 |   |   | AL390996 | 32709080 | 1 | 64263 | 0 | 13069 | 77332 |
| S/G/Y/R/B/O |
NT_033982 | AL161936 | 32810996 | 3 |   |   | AL445311 | 32709080 | 1 | 82696 | 0 | 0 | 82696 |
| S/G/Y/R/B/O |
NT_033982 | AL355376 | 32966580 | 3 | chr10 | NT_033982 | AL390248 | 33081736 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033982 | AL355376 | 32966580 | 3 |   |   | AL365354 | 32709080 | 1 | 66327 | 0 | 0 | 66327 |
| S/G/Y/R/B/O |
NT_033982 | AL355376 | 32966580 | 3 |   |   | AL390996 | 32709080 | 1 | 75633 | 0 | 0 | 75633 |
| S/G/Y/R/B/O |
NT_033982 | AL390248 | 33081736 | 3 | chr10 | NT_033982 | AL359995 | 33205534 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033982 | AL390248 | 33081736 | 3 |   |   | AC025640 | 32709080 | 1 | 98036 | 9015 | 0 | 107051 |
| S/G/Y/R/B/O |
NT_033982 | AL390248 | 33081736 | 3 |   |   | AL365354 | 32709080 | 1 | 94090 | 5321 | 21862 | 121273 |
| S/G/Y/R/B/O |
NT_033982 | AL359995 | 33205534 | 3 | chr10 | NT_033982 | AL355858 | 33226870 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033982 | AL355858 | 33226870 | 3 | chr10 | NT_033982 | AL357118 | 33416446 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033982 | AL355858 | 33226870 | 3 | chr10 | NT_033912 | AL392165 | 32517184 | 1 | 92584 | 2221 | 11935 | 106740 |
| S/G/Y/R/B/O |
NT_033982 | AL355858 | 33226870 | 3 |   |   | AL355814 | 32396425 | 1 | 109962 | 2922 | 17438 | 130322 |
| S/G/Y/R/B/O |
NT_033982 | AL357118 | 33416446 | 3 | chr10 | NT_033982 | AL365180 | 33506100 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033982 | AL357118 | 33416446 | 3 | chr10 | NT_033912 | AC005878 | 32396425 | 3 | 91492 | 0 | 0 | 91492 |
| S/G/Y/R/B/O |
NT_033982 | AL357118 | 33416446 | 3 | chr10 | NT_033912 | AL392165 | 32517184 | 1 | 57031 | 0 | 0 | 57031 |
| S/G/Y/R/B/O |
NT_033982 | AL357118 | 33416446 | 3 |   |   | AL355814 | 32396425 | 1 | 34063 | 0 | 0 | 34063 |
| S/G/Y/R/B/O |
NT_033982 | AL357118 | 33416446 | 3 |   |   | AL512431 | 32517184 | 1 | 46509 | 0 | 0 | 46509 |
| S/G/Y/R/B/O |
NT_033982 | AL365180 | 33506100 | 3 | chr10 | NT_033982 | AL158167 | 33553872 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033982 | AL365180 | 33506100 | 3 | chr10 | NT_033912 | AC005878 | 32396425 | 3 | 49761 | 0 | 0 | 49761 |
| S/G/Y/R/B/O |
NT_033982 | AL365180 | 33506100 | 3 |   |   | AL512431 | 32396425 | 1 | 34119 | 0 | 0 | 34119 |
| S/G/Y/R/B/O |
NT_033982 | AL158167 | 33553872 | 3 | chr10 | NT_033982 | AL160060 | 33781516 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033982 | AL158167 | 33553872 | 3 |   |   | AL157390 | 32396425 | 1 | 49449 | 4332 | 28809 | 82590 |
| S/G/Y/R/B/O |
NT_033982 | AL158167 | 33553872 | 3 |   |   | AL512431 | 32396425 | 1 | 70836 | 0 | 0 | 70836 |
| S/G/Y/R/B/O |
NT_033982 | AL158167 | 33553872 | 3 |   |   | AL591134 | 32396425 | 1 | 12643 | 0 | 0 | 12643 |
| S/G/Y/R/B/O |
NT_033982 | AL160060 | 33781516 | 3 | chr10 | NT_033982 | AL159170 | 33951316 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033982 | AL160060 | 33781516 | 3 |   |   | AL157390 | 32396425 | 1 | 64369 | 0 | 0 | 64369 |
| S/G/Y/R/B/O |
NT_033982 | AL160060 | 33781516 | 3 |   |   | AL390024 | 32396425 | 1 | 79177 | 0 | 6306 | 85483 |
| S/G/Y/R/B/O |
NT_033982 | AL160060 | 33781516 | 3 |   |   | AL591134 | 32396425 | 1 | 106958 | 0 | 37940 | 144898 |
| S/G/Y/R/B/O |
NT_033982 | AL159170 | 33951316 | 3 | chr10 | NT_033982 | AL353093 | 34096126 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033982 | AL159170 | 33951316 | 3 |   |   | AL390024 | 32396425 | 1 | 47107 | 5706 | 6470 | 59283 |
| S/G/Y/R/B/O |
NT_033982 | AL159170 | 33951316 | 3 |   |   | AL591706 | 32396425 | 1 | 35967 | 0 | 0 | 35967 |
| S/G/Y/R/B/O |
NT_033982 | AL353093 | 34096126 | 3 | chr10 | NT_033982 | AL158036 | 34250134 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033982 | AL353093 | 34096126 | 3 |   |   | AL360090 | 34250134 | 1 | 66721 | 0 | 6116 | 72837 |
| S/G/Y/R/B/O |
NT_033982 | AL353093 | 34096126 | 3 |   |   | AL591706 | 34250134 | 1 | 150127 | 2714 | 0 | 152841 |
| S/G/Y/R/B/O |
NT_033982 | AL158036 | 34250134 | 3 | chr10 | NT_033982 | AL360172 | 34342475 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033982 | AL158036 | 34250134 | 3 |   |   | AL360090 | 34096126 | 1 | 49061 | 0 | 41703 | 90764 |
| S/G/Y/R/B/O |
NT_033982 | AL158036 | 34250134 | 3 |   |   | AL591103 | 34342475 | 1 | 60856 | 0 | 0 | 60856 |
| S/G/Y/R/B/O |
NT_033982 | AL360172 | 34342475 | 3 | chr10 | NT_033982 | AL353796 | 34529412 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033982 | AL360172 | 34342475 | 3 | chr10 | NT_033982 | AL591705 | 36235968 | 1 | 114022 | 0 | 0 | 114022 |
| S/G/Y/R/B/O |
NT_033982 | AL360172 | 34342475 | 3 |   |   | AC072024 | 34342475 | 1 | 79338 | 0 | 8405 | 87743 |
| S/G/Y/R/B/O |
NT_033982 | AL360172 | 34342475 | 3 |   |   | AL390297 | 34250134 | 1 | 13701 | 6869 | 13691 | 34261 |
| S/G/Y/R/B/O |
NT_033982 | AL360172 | 34342475 | 3 |   |   | AL591103 | 34250134 | 1 | 146137 | 5187 | 0 | 151324 |
| S/G/Y/R/B/O |
NT_033982 | AL353796 | 34529412 | 3 | chr10 | NT_033982 | AL161651 | 34584728 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033982 | AL353796 | 34529412 | 3 | chr10 | NT_033982 | AL591705 | 36235968 | 1 | 46105 | 2672 | 0 | 48777 |
| S/G/Y/R/B/O |
NT_033982 | AL353796 | 34529412 | 3 |   |   | AC072024 | 36235968 | 1 | 21252 | 0 | 17083 | 38335 |
| S/G/Y/R/B/O |
NT_033982 | AL353796 | 34529412 | 3 |   |   | AL355542 | 36235968 | 1 | 34888 | 0 | 0 | 34888 |
| S/G/Y/R/B/O |
NT_033982 | AL161651 | 34584728 | 3 | chr10 | NT_033982 | AL590068 | 34794355 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033982 | AL161651 | 34584728 | 3 |   |   | AC072024 | 36235968 | 1 | 11846 | 2015 | 2210 | 16071 |
| S/G/Y/R/B/O |
NT_033982 | AL161651 | 34584728 | 3 |   |   | AL158037 | 36235968 | 1 | 38006 | 0 | 23642 | 61648 |
| S/G/Y/R/B/O |
NT_033982 | AL161651 | 34584728 | 3 |   |   | AL355542 | 36235968 | 1 | 96644 | 2522 | 2766 | 101932 |
| S/G/Y/R/B/O |
NT_033982 | AL161651 | 34584728 | 3 |   |   | AL391279 | 36235968 | 1 | 113180 | 0 | 59859 | 173039 |
| S/G/Y/R/B/O |
NT_033982 | AL161651 | 34584728 | 3 |   |   | AL591663 | 34794355 | 1 | 40134 | 2928 | 3467 | 46529 |
| S/G/Y/R/B/O |
NT_033982 | AL590068 | 34794355 | 3 | chr10 | NT_033982 | AL451107 | 34864135 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_033982 | AL590068 | 34794355 | 3 |   |   | AL591663 | 34864135 | 1 | 52268 | 5164 | 5224 | 62656 |
| S/G/Y/R/B/O |
NT_033982 | AL451107 | 34864135 | 3 | chr10 | NT_033982 | AL359532 | 35034915 | 2 | 17699 | 0 | 0 | 17699 |
| S/G/Y/R/B/O |
NT_033982 | AL451107 | 34864135 | 3 |   |   | AL591663 | 34794355 | 1 | 32251 | 2409 | 13305 | 47965 |
| S/G/Y/R/B/O |
NT_033982 | AL359532 | 35034915 | 2 | chr10 | NT_033982 | AC025341 | 35209435 | 1 | 88804 | 2081 | 0 | 90885 |
| S/G/Y/R/B/O |
NT_033982 | AC025341 | 35209435 | 1 | chr10 | NT_033982 | AL591707 | 35210704 | 3 | 0 | 3987 | 0 | 3987 |
| S/G/Y/R/B/O |
NT_033982 | AC025341 | 35209435 | 1 | chr10 | NT_033982 | AL359546 | 35280660 | 3 | 15325 | 0 | 0 | 15325 |
| S/G/Y/R/B/O |
NT_033982 | AC025341 | 35209435 | 1 | chr10 | NT_033982 | AL596113 | 35214698 | 3 | 43520 | 1941 | 7672 | 53133 |
| S/G/Y/R/B/O |
NT_033982 | AC025341 | 35209435 | 1 |   |   | AL365497 | 35280660 | 1 | 16178 | 0 | 3990 | 20168 |
| S/G/Y/R/B/O |
NT_033982 | AL591707 | 35210704 | 3 | chr10 | NT_033982 | AL596113 | 35214698 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033982 | AL596113 | 35214698 | 3 | chr10 | NT_033982 | AL359546 | 35280660 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033982 | AL596113 | 35214698 | 3 | chr10 | NT_033982 | AC025341 | 35209435 | 1 | 43520 | 1941 | 7672 | 53133 |
| S/G/Y/R/B/O |
NT_033982 | AL596113 | 35214698 | 3 |   |   | AL365497 | 35280660 | 1 | 20350 | 0 | 0 | 20350 |
| S/G/Y/R/B/O |
NT_033982 | AL359546 | 35280660 | 3 | chr10 | NT_033982 | AL356258 | 35453130 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033982 | AL359546 | 35280660 | 3 | chr10 | NT_033982 | AC025341 | 35209435 | 1 | 15325 | 0 | 0 | 15325 |
| S/G/Y/R/B/O |
NT_033982 | AL359546 | 35280660 | 3 |   |   | AL365497 | 35209435 | 1 | 172458 | 0 | 0 | 172458 |
| S/G/Y/R/B/O |
NT_033982 | AL359546 | 35280660 | 3 |   |   | AL591123 | 35209435 | 1 | 18857 | 0 | 0 | 18857 |
| S/G/Y/R/B/O |
NT_033982 | AL356258 | 35453130 | 3 | chr10 | NT_033982 | AL117340 | 35512709 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033982 | AL356258 | 35453130 | 3 |   |   | AL365497 | 35512709 | 1 | 24645 | 0 | 0 | 24645 |
| S/G/Y/R/B/O |
NT_033982 | AL356258 | 35453130 | 3 |   |   | AL591123 | 35512709 | 1 | 61354 | 0 | 0 | 61354 |
| S/G/Y/R/B/O |
NT_033982 | AL117340 | 35512709 | 3 | chr10 | NT_033982 | AL158080 | 35698226 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033982 | AL117340 | 35512709 | 3 |   |   | AF225898 | 35512709 | 3 | 69921 | 0 | 0 | 69921 |
| S/G/Y/R/B/O |
NT_033982 | AL117340 | 35512709 | 3 |   |   | AL591123 | 35453130 | 1 | 119936 | 0 | 0 | 119936 |
| S/G/Y/R/B/O |
NT_033982 | AL158080 | 35698226 | 3 | chr10 | NT_033982 | AL355148 | 35762261 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033982 | AL158080 | 35698226 | 3 |   |   | AF225898 | 35453130 | 3 | 64115 | 0 | 0 | 64115 |
| S/G/Y/R/B/O |
NT_033982 | AL355148 | 35762261 | 3 | chr10 | NT_033982 | AL161935 | 35785803 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033982 | AL355148 | 35762261 | 3 |   |   | AC005877 | 35453130 | 3 | 23615 | 0 | 0 | 23615 |
| S/G/Y/R/B/O |
NT_033982 | AL355148 | 35762261 | 3 |   |   | AF225898 | 35453130 | 3 | 23615 | 0 | 0 | 23615 |
| S/G/Y/R/B/O |
NT_033982 | AL161935 | 35785803 | 3 | chr10 | NT_033982 | AL353769 | 35977527 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033982 | AL161935 | 35785803 | 3 |   |   | AC005877 | 35453130 | 3 | 99998 | 0 | 0 | 99998 |
| S/G/Y/R/B/O |
NT_033982 | AL161935 | 35785803 | 3 |   |   | AF225898 | 35453130 | 3 | 40674 | 0 | 0 | 40674 |
| S/G/Y/R/B/O |
NT_033982 | AL161935 | 35785803 | 3 |   |   | AL359829 | 35453130 | 1 | 70807 | 4422 | 3138 | 78367 |
| S/G/Y/R/B/O |
NT_033982 | AL161935 | 35785803 | 3 |   |   | AL365257 | 35453130 | 1 | 61214 | 0 | 0 | 61214 |
| S/G/Y/R/B/O |
NT_033982 | AL353769 | 35977527 | 3 | chr10 | NT_033982 | AL390715 | 36055036 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033982 | AL353769 | 35977527 | 3 |   |   | AL365257 | 35453130 | 1 | 61899 | 0 | 5794 | 67693 |
| S/G/Y/R/B/O |
NT_033982 | AL353769 | 35977527 | 3 |   |   | AL445436 | 35453130 | 1 | 46665 | 0 | 18016 | 64681 |
| S/G/Y/R/B/O |
NT_033982 | AL390715 | 36055036 | 1 | chr10 | NT_033982 | AL591705 | 36235968 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033982 | AL390715 | 36055036 | 1 | chr10 | NT_033982 | AL365319 | 36244038 | 1 | 65239 | 4023 | 0 | 69262 |
| S/G/Y/R/B/O |
NT_033982 | AL390715 | 36055036 | 1 |   |   | AL365257 | 35453130 | 1 | 13689 | 0 | 0 | 13689 |
| S/G/Y/R/B/O |
NT_033982 | AL390715 | 36055036 | 1 |   |   | AL445436 | 36244038 | 1 | 128611 | 0 | 0 | 128611 |
| S/G/Y/R/B/O |
NT_033982 | AL591705 | 36235968 | 1 | chr10 | NT_033982 | AL365319 | 36244038 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033982 | AL591705 | 36235968 | 1 | chr10 | NT_033982 | AL353796 | 34529412 | 3 | 46105 | 2672 | 0 | 48777 |
| S/G/Y/R/B/O |
NT_033982 | AL591705 | 36235968 | 1 | chr10 | NT_033982 | AL360172 | 34342475 | 3 | 114022 | 0 | 0 | 114022 |
| S/G/Y/R/B/O |
NT_033982 | AL591705 | 36235968 | 1 |   |   | AC072024 | 36244038 | 1 | 60298 | 1161 | 21644 | 83103 |
| S/G/Y/R/B/O |
NT_033982 | AL591705 | 36235968 | 1 |   |   | AL355542 | 34529412 | 1 | 15155 | 2614 | 0 | 17769 |
| S/G/Y/R/B/O |
NT_033982 | AL591705 | 36235968 | 1 |   |   | AL390297 | 34342475 | 1 | 14966 | 14739 | 6411 | 36116 |
| S/G/Y/R/B/O |
NT_033982 | AL591705 | 36235968 | 1 |   |   | AL591103 | 34342475 | 1 | 58119 | 0 | 0 | 58119 |
| S/G/Y/R/B/O |
NT_033982 | AL365319 | 36244038 | 1 | chr10 | NT_033982 | AL161932 | 36248641 | 3 | 85146 | 0 | 2488 | 87634 |
| S/G/Y/R/B/O |
NT_033982 | AL365319 | 36244038 | 1 | chr10 | NT_033988 | AC006101 | 36446587 | 3 | 69595 | 5338 | 2483 | 77416 |
| S/G/Y/R/B/O |
NT_033982 | AL365319 | 36244038 | 1 | chr10 | NT_033982 | AL390715 | 36055036 | 1 | 65239 | 4023 | 0 | 69262 |
| S/G/Y/R/B/O |
NT_033982 | AL365319 | 36244038 | 1 |   |   | AL445436 | 36055036 | 1 | 13155 | 0 | 0 | 13155 |
| S/G/Y/R/B/O |
NT_033982 | AL161932 | 36248641 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033982 | AL161932 | 36248641 | 3 | chr10 | NT_033988 | AC006101 | 36446587 | 3 | 133070 | 0 | 0 | 133070 |
| S/G/Y/R/B/O |
NT_033982 | AL161932 | 36248641 | 3 | chr10 | NT_033988 | AL591709 | 36442064 | 1 | 18015 | 0 | 0 | 18015 |
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