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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033226 | AL590070 | 26211992 | 1 | chr10 | NT_033226 | AC012045 | 26216012 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033226 | AL590070 | 26211992 | 1 | chr10 | NT_033226 | AL358612 | 26379418 | 3 | 116374 | 0 | 2974 | 119348 |
| S/G/Y/R/B/O |
NT_033226 | AL590070 | 26211992 | 1 | chr10 | NT_033226 | AL391812 | 26519604 | 3 | 24892 | 1937 | 0 | 26829 |
| S/G/Y/R/B/O |
NT_033226 | AC012045 | 26216012 | 1 | chr10 | NT_033226 | AL591683 | 26310938 | 1 | 44416 | 36338 | 6164 | 86918 |
| S/G/Y/R/B/O |
NT_033226 | AC012045 | 26216012 | 1 | chr10 | NT_033892 | AC018509 | 25961679 | 3 | 37120 | 0 | 0 | 37120 |
| S/G/Y/R/B/O |
NT_033226 | AC012045 | 26216012 | 1 | chr10 | NT_033892 | AL591114 | 26122554 | 1 | 47870 | 0 | 16509 | 64379 |
| S/G/Y/R/B/O |
NT_033226 | AL591683 | 26310938 | 1 | chr10 | NT_033226 | AL358612 | 26379418 | 3 | 27015 | 8202 | 0 | 35217 |
| S/G/Y/R/B/O |
NT_033226 | AL591683 | 26310938 | 1 | chr10 | NT_033892 | AL591114 | 26122554 | 1 | 13729 | 6758 | 0 | 20487 |
| S/G/Y/R/B/O |
NT_033226 | AL358612 | 26379418 | 3 | chr10 | NT_033226 | AL391812 | 26519604 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033226 | AL358612 | 26379418 | 3 | chr10 | NT_033226 | AL590070 | 26211992 | 1 | 116374 | 0 | 2974 | 119348 |
| S/G/Y/R/B/O |
NT_033226 | AL391812 | 26519604 | 3 | chr10 | NT_033226 | AL360217 | 26578816 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033226 | AL391812 | 26519604 | 3 | chr10 | NT_033226 | AL590070 | 26211992 | 1 | 24892 | 1937 | 0 | 26829 |
| S/G/Y/R/B/O |
NT_033226 | AL360217 | 26578816 | 3 | chr10 | NT_033226 | AL162503 | 26624988 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033226 | AL360217 | 26578816 | 3 |   |   | AL389927 | 26624988 | 1 | 12275 | 4012 | 0 | 16287 |
| S/G/Y/R/B/O |
NT_033226 | AL162503 | 26624988 | 3 | chr10 | NT_033226 | AL355798 | 26798582 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033226 | AL162503 | 26624988 | 3 |   |   | AL389927 | 26578816 | 1 | 153635 | 0 | 0 | 153635 |
| S/G/Y/R/B/O |
NT_033226 | AL162503 | 26624988 | 3 |   |   | AL591717 | 26578816 | 1 | 48759 | 0 | 0 | 48759 |
| S/G/Y/R/B/O |
NT_033226 | AL355798 | 26798582 | 3 | chr10 | NT_033226 | AL160287 | 26921430 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033226 | AL355798 | 26798582 | 3 |   |   | AL591717 | 26578816 | 1 | 107670 | 0 | 9030 | 116700 |
| S/G/Y/R/B/O |
NT_033226 | AL160287 | 26921430 | 3 | chr10 | NT_033226 | AL390961 | 27065996 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033226 | AL160287 | 26921430 | 3 |   |   | AL138896 | 26578816 | 1 | 43701 | 2967 | 0 | 46668 |
| S/G/Y/R/B/O |
NT_033226 | AL160287 | 26921430 | 3 |   |   | AL365218 | 26578816 | 1 | 104707 | 5274 | 13214 | 123195 |
| S/G/Y/R/B/O |
NT_033226 | AL390961 | 27065996 | 3 | chr10 | NT_033226 | AL139404 | 27237946 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033226 | AL390961 | 27065996 | 3 |   |   | AC022245 | 26578816 | 1 | 111751 | 0 | 14467 | 126218 |
| S/G/Y/R/B/O |
NT_033226 | AL390961 | 27065996 | 3 |   |   | AL138896 | 26578816 | 1 | 144016 | 6831 | 0 | 150847 |
| S/G/Y/R/B/O |
NT_033226 | AL390961 | 27065996 | 3 |   |   | AL591164 | 27237946 | 1 | 56607 | 2815 | 0 | 59422 |
| S/G/Y/R/B/O |
NT_033226 | AL139404 | 27237946 | 3 | chr10 | NT_033226 | AL365501 | 27358859 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033226 | AL139404 | 27237946 | 3 |   |   | AC022245 | 27237946 | 1 | 32412 | 0 | 0 | 32412 |
| S/G/Y/R/B/O |
NT_033226 | AL139404 | 27237946 | 3 |   |   | AL138896 | 27237946 | 1 | 13176 | 0 | 0 | 13176 |
| S/G/Y/R/B/O |
NT_033226 | AL139404 | 27237946 | 3 |   |   | AL591164 | 27065996 | 1 | 74192 | 5219 | 0 | 79411 |
| S/G/Y/R/B/O |
NT_033226 | AL365501 | 27358859 | 3 | chr10 | NT_033226 | AL162272 | 27429748 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033226 | AL365501 | 27358859 | 3 |   |   | AL138896 | 27065996 | 1 | 36606 | 0 | 0 | 36606 |
| S/G/Y/R/B/O |
NT_033226 | AL162272 | 27429748 | 3 | chr10 | NT_033226 | AL160291 | 27582652 | 2 | 27377 | 0 | 0 | 27377 |
| S/G/Y/R/B/O |
NT_033226 | AL160291 | 27582652 | 2 | chr10 | NT_033226 | AL390916 | 27736615 | 1 | 56353 | 0 | 0 | 56353 |
| S/G/Y/R/B/O |
NT_033226 | AL160291 | 27582652 | 2 |   |   | AL365228 | 27429748 | 1 | 122344 | 2366 | 15809 | 140519 |
| S/G/Y/R/B/O |
NT_033226 | AL390916 | 27736615 | 1 | chr10 | NT_033226 | AC005875 | 27774900 | 3 | 69887 | 0 | 0 | 69887 |
| S/G/Y/R/B/O |
NT_033226 | AL390916 | 27736615 | 1 | chr10 | NT_033227 | AL355493 | 28203407 | 3 | 93761 | 0 | 0 | 93761 |
| S/G/Y/R/B/O |
NT_033226 | AL390916 | 27736615 | 1 |   |   | AL365228 | 28203407 | 1 | 27184 | 3831 | 13323 | 44338 |
| S/G/Y/R/B/O |
NT_033226 | AC005875 | 27774900 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033226 | AC005875 | 27774900 | 3 | chr10 | NT_033227 | AL138920 | 28335361 | 3 | 29871 | 0 | 0 | 29871 |
| S/G/Y/R/B/O |
NT_033226 | AC005875 | 27774900 | 3 | chr10 | NT_033227 | AL591111 | 28501580 | 1 | 44259 | 0 | 0 | 44259 |
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