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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_008646 | AC012044 | 48768509 | 1 | chr10 | NT_008646 | AL512595 | 48770109 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008646 | AC012044 | 48768509 | 1 | chr10 | NT_008646 | AL450342 | 49378234 | 3 | 60609 | 0 | 0 | 60609 |
| S/G/Y/R/B/O |
NT_008646 | AC012044 | 48768509 | 1 |   |   | AC018510 | 77412502 | 1 | 58479 | 0 | 0 | 58479 |
| S/G/Y/R/B/O |
NT_008646 | AC012044 | 48768509 | 1 |   |   | AL672187 | 49378234 | 1 | 93303 | 0 | 38223 | 131526 |
| S/G/Y/R/B/O |
NT_008646 | AL512595 | 48770109 | 3 | chr10 | NT_008646 | AL445201 | 48844389 | 3 | 6495 | 0 | 0 | 6495 |
| S/G/Y/R/B/O |
NT_008646 | AL445201 | 48844389 | 3 | chr10 | NT_008646 | AL645998 | 49021582 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008646 | AL445201 | 48844389 | 3 | chr10 | NT_008646 | AC021320 | 49032023 | 1 | 47627 | 8567 | 2715 | 58909 |
| S/G/Y/R/B/O |
NT_008646 | AL445201 | 48844389 | 3 |   |   | AC018510 | 48844389 | 1 | 21414 | 0 | 0 | 21414 |
| S/G/Y/R/B/O |
NT_008646 | AL645998 | 49021582 | 3 | chr10 | NT_008646 | AC021320 | 49032023 | 1 | 4697 | 0 | 1167 | 5864 |
| S/G/Y/R/B/O |
NT_008646 | AL645998 | 49021582 | 3 |   |   | AC018510 | 48770109 | 1 | 10441 | 0 | 0 | 10441 |
| S/G/Y/R/B/O |
NT_008646 | AC021320 | 49032023 | 1 | chr10 | NT_008646 | AL391137 | 49033050 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008646 | AC021320 | 49032023 | 1 | chr10 | NT_008646 | AL445201 | 48844389 | 3 | 47627 | 8567 | 2715 | 58909 |
| S/G/Y/R/B/O |
NT_008646 | AC021320 | 49032023 | 1 |   |   | AC018510 | 48768509 | 1 | 104573 | 10625 | 11243 | 126441 |
| S/G/Y/R/B/O |
NT_008646 | AL391137 | 49033050 | 1 | chr10 | NT_008646 | AL390716 | 49209219 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_008646 | AL391137 | 49033050 | 1 | chr10 | NT_031847 | AL356056 | 47275070 | 3 | 25106 | 0 | 0 | 25106 |
| S/G/Y/R/B/O |
NT_008646 | AL391137 | 49033050 | 1 | chr10 | NT_030772 | AL591684 | 47860640 | 3 | 99464 | 0 | 0 | 99464 |
| S/G/Y/R/B/O |
NT_008646 | AL391137 | 49033050 | 1 | chr10 | NT_031847 | AL603982 | 47214818 | 3 | 61814 | 0 | 0 | 61814 |
| S/G/Y/R/B/O |
NT_008646 | AL390716 | 49209219 | 3 | chr10 | NT_008646 | AC021411 | 49284350 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008646 | AC021411 | 49284350 | 1 | chr10 | NT_008646 | AL589822 | 49294080 | 2 | 66443 | 1532 | 3860 | 71835 |
| S/G/Y/R/B/O |
NT_008646 | AC021411 | 49284350 | 1 | chr10 | NT_031847 | AL450334 | 47042888 | 3 | 27352 | 1528 | 10051 | 38931 |
| S/G/Y/R/B/O |
NT_008646 | AC021411 | 49284350 | 1 | chr10 | NT_008646 | AL450388 | 50587112 | 3 | 60859 | 7225 | 1194 | 69278 |
| S/G/Y/R/B/O |
NT_008646 | AL589822 | 49294080 | 2 | chr10 | NT_008646 | AL450342 | 49378234 | 3 | 75843 | 0 | 0 | 75843 |
| S/G/Y/R/B/O |
NT_008646 | AL450342 | 49378234 | 3 | chr10 | NT_008646 | AL442003 | 49570154 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008646 | AL450342 | 49378234 | 3 | chr10 | NT_008646 | AC012044 | 48768509 | 1 | 60609 | 0 | 0 | 60609 |
| S/G/Y/R/B/O |
NT_008646 | AL442003 | 49570154 | 3 | chr10 | NT_008646 | AL450382 | 49731610 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008646 | AL442003 | 49570154 | 3 |   |   | AC055726 | 49284350 | 1 | 19116 | 1549 | 18383 | 39048 |
| S/G/Y/R/B/O |
NT_008646 | AL450382 | 49731610 | 3 | chr10 | NT_008646 | AC069547 | 49891838 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008646 | AL450382 | 49731610 | 3 |   |   | AC012131 | 49284350 | 1 | 81281 | 0 | 0 | 81281 |
| S/G/Y/R/B/O |
NT_008646 | AL450382 | 49731610 | 3 |   |   | AC055726 | 49284350 | 1 | 85399 | 0 | 17205 | 102604 |
| S/G/Y/R/B/O |
NT_008646 | AL450382 | 49731610 | 3 |   |   | AL583858 | 49284350 | 2 | 94288 | 0 | 0 | 94288 |
| S/G/Y/R/B/O |
NT_008646 | AC069547 | 49891838 | 3 | chr10 | NT_008646 | AL117341 | 50079245 | 3 | 63022 | 0 | 0 | 63022 |
| S/G/Y/R/B/O |
NT_008646 | AC069547 | 49891838 | 3 |   |   | AC012131 | 49284350 | 1 | 94063 | 0 | 0 | 94063 |
| S/G/Y/R/B/O |
NT_008646 | AC069547 | 49891838 | 3 |   |   | AL583858 | 50079245 | 2 | 94417 | 0 | 0 | 94417 |
| S/G/Y/R/B/O |
NT_008646 | AL117341 | 50079245 | 3 | chr10 | NT_008646 | AL596137 | 50197401 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_008646 | AL596137 | 50197401 | 3 | chr10 | NT_008646 | AL589794 | 50246880 | 2 | 0 | 1999 | 0 | 1999 |
| S/G/Y/R/B/O |
NT_008646 | AL589794 | 50246880 | 2 | chr10 | NT_008646 | AL512366 | 50423779 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008646 | AL589794 | 50246880 | 2 |   |   | AL513306 | 50246880 | 2 | 97178 | 0 | 0 | 97178 |
| S/G/Y/R/B/O |
NT_008646 | AL512366 | 50423779 | 3 | chr10 | NT_008646 | AC044786 | 50557723 | 3 | 54265 | 0 | 0 | 54265 |
| S/G/Y/R/B/O |
NT_008646 | AL512366 | 50423779 | 3 |   |   | AL513306 | 50557723 | 2 | 121585 | 0 | 0 | 121585 |
| S/G/Y/R/B/O |
NT_008646 | AC044786 | 50557723 | 3 | chr10 | NT_008646 | AL450388 | 50587112 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008646 | AL450388 | 50587112 | 3 | chr10 | NT_008646 | AL603965 | 50745608 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_008646 | AL450388 | 50587112 | 3 | chr10 | NT_008646 | AC021411 | 49284350 | 1 | 60859 | 7225 | 1194 | 69278 |
| S/G/Y/R/B/O |
NT_008646 | AL603965 | 50745608 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_008646 | AL603965 | 50745608 | 3 | chr10 | NT_030772 | AC021038 | 47958706 | 1 | 23181 | 0 | 0 | 23181 |
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