Chromosome 10 - Clone Overlaps

Chromosome 10 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_024115	NT_024081	NT_033983	NT_033894	NT_033916	NT_008705	NT_033921	NT_033986
NT_033892	NT_033226	NT_033223	NT_033227	NT_033912	NT_033982	NT_033988	NT_033896
NT_024133	NT_033987	NT_033985	NT_031847	NT_030066	NT_030772	NT_033228	NT_008646
NT_017696	NT_031860	NT_033898	NT_033920	NT_008748	NT_033222	NT_033990	NT_024085
NT_033984	NT_008797	NT_033897	NT_008583	NT_033220	NT_033891	NT_033895	NT_033917
NT_033989	NT_033918	NT_033919	NT_033893	NT_024037	NT_030075	NT_033890	NT_024064
NT_030070	NT_008769	NT_033229	NT_030059	NT_008818	NT_033221	NT_031855	NT_031856
NT_008902	NT_030764	NT_027097	NT_024086	NT_025835	NT_033224	NT_033225	NT_024040
NT_017795	NT_028298

NT_033896

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_033896	AC094097	37331393	1	chr10	NT_033896	AL591850	37335430	3	6926	2821	0	9747
S/G/Y/R/B/O	NT_033896	AC094097	37331393	1	chr10	NT_033896	AL365203	37365941	3	144704	0	0	144704
S/G/Y/R/B/O	NT_033896	AC094097	37331393	1			AC041017	73478178	1	18502	0	1355	19857
S/G/Y/R/B/O	NT_033896	AC094097	37331393	1			AL590967	37365941	1	84926	0	54159	139085
S/G/Y/R/B/O	NT_033896	AL591850	37335430	3	chr10	NT_033896	AL365203	37365941	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL365203	37365941	3	chr10	NT_033896	AL133333	37561914	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL365203	37365941	3	chr10	NT_033896	AC094097	37331393	1	144704	0	0	144704
S/G/Y/R/B/O	NT_033896	AL365203	37365941	3			AC041017	37331393	1	84045	0	4193	88238
S/G/Y/R/B/O	NT_033896	AL365203	37365941	3			AL590967	37331393	1	93681	0	96491	190172
S/G/Y/R/B/O	NT_033896	AL133333	37561914	3	chr10	NT_033896	AL121748	37607524	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL133333	37561914	3			AC041017	37331393	1	36836	2571	0	39407
S/G/Y/R/B/O	NT_033896	AL133333	37561914	3			AL591369	37331393	1	27438	0	19958	47396
S/G/Y/R/B/O	NT_033896	AL121748	37607524	3	chr10	NT_033896	AL353600	37783707	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL121748	37607524	3			AC041017	37331393	1	46648	1803	7304	55755
S/G/Y/R/B/O	NT_033896	AL121748	37607524	3			AL591369	37783707	1	118883	2935	5225	127043
S/G/Y/R/B/O	NT_033896	AL353600	37783707	3	chr10	NT_033896	AL392109	37906247	3	0	1994	0	1994
S/G/Y/R/B/O	NT_033896	AL353600	37783707	3	chr10	NT_033896	AL392188	37912696	1	40159	0	0	40159
S/G/Y/R/B/O	NT_033896	AL392109	37906247	3	chr10	NT_033896	AL392188	37912696	1	8388	0	0	8388
S/G/Y/R/B/O	NT_033896	AL392188	37912696	1	chr10	NT_033896	AC084133	37983400	1	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL392188	37912696	1	chr10	NT_033896	AC018980	38032007	3	71123	0	0	71123
S/G/Y/R/B/O	NT_033896	AL392188	37912696	1	chr10	NT_033896	AL353600	37783707	3	40159	0	0	40159
S/G/Y/R/B/O	NT_033896	AL392188	37912696	1			AC020644	38032007	3	71121	0	0	71121
S/G/Y/R/B/O	NT_033896	AC084133	37983400	1	chr10	NT_033896	AL356243	38028007	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AC084133	37983400	1	chr10	NT_033896	AC018980	38032007	3	40136	8518	0	48654
S/G/Y/R/B/O	NT_033896	AC084133	37983400	1	chr10	NT_033896	AL353643	38269691	3	61868	8009	1291	71168
S/G/Y/R/B/O	NT_033896	AC084133	37983400	1	chr10	NT_033896	AL450313	38227714	3	27910	12352	0	40262
S/G/Y/R/B/O	NT_033896	AC084133	37983400	1			AC020644	38032007	3	40136	8518	0	48654
S/G/Y/R/B/O	NT_033896	AL356243	38028007	3	chr10	NT_033896	AC018980	38032007	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AC018980	38032007	3	chr10	NT_033896	AL450313	38227714	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AC018980	38032007	3	chr10	NT_033896	AC084133	37983400	1	40136	8518	0	48654
S/G/Y/R/B/O	NT_033896	AC018980	38032007	3	chr10	NT_033896	AL392188	37912696	1	71123	0	0	71123
S/G/Y/R/B/O	NT_033896	AC018980	38032007	3			AC020644	37912696	3	197698	0	0	197698
S/G/Y/R/B/O	NT_033896	AL450313	38227714	3	chr10	NT_033896	AL353643	38269691	3	0	1999	0	1999
S/G/Y/R/B/O	NT_033896	AL450313	38227714	3	chr10	NT_033896	AC084133	37983400	1	27910	12352	0	40262
S/G/Y/R/B/O	NT_033896	AL353643	38269691	3	chr10	NT_033896	AL117338	38397769	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL353643	38269691	3	chr10	NT_033896	AC084133	37983400	1	61868	8009	1291	71168
S/G/Y/R/B/O	NT_033896	AL117338	38397769	3	chr10	NT_033896	AL160409	38566447	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL117338	38397769	3			AL391004	38227714	1	139899	0	0	139899
S/G/Y/R/B/O	NT_033896	AL117338	38397769	3			AL591464	38227714	1	65200	2358	0	67558
S/G/Y/R/B/O	NT_033896	AL160409	38566447	3	chr10	NT_033896	AL390766	38670645	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL160409	38566447	3			AC025823	38227714	1	13861	0	69938	83799
S/G/Y/R/B/O	NT_033896	AL160409	38566447	3			AL391004	54936681	1	22425	0	0	22425
S/G/Y/R/B/O	NT_033896	AL160409	38566447	3			AL591464	54936681	1	76244	0	7522	83766
S/G/Y/R/B/O	NT_033896	AL390766	38670645	3	chr10	NT_033896	AL392123	38861776	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL390766	38670645	3			AC011644	54936681	1	161378	2990	0	164368
S/G/Y/R/B/O	NT_033896	AL390766	38670645	3			AC013705	54936681	1	158453	6766	344	165563
S/G/Y/R/B/O	NT_033896	AL390766	38670645	3			AC025823	54936681	1	32571	0	0	32571
S/G/Y/R/B/O	NT_033896	AL390766	38670645	3			AL356462	54936681	1	123265	2136	37247	162648
S/G/Y/R/B/O	NT_033896	AL390766	38670645	3			AL591464	38861776	1	23544	0	0	23544
S/G/Y/R/B/O	NT_033896	AL392123	38861776	3	chr10	NT_033896	AL360233	38964133	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL360233	38964133	3	chr10	NT_033896	AL138768	39071949	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL360233	38964133	3			AC012241	38670645	1	107645	0	0	107645
S/G/Y/R/B/O	NT_033896	AL360233	38964133	3			AL391067	39071949	1	14803	2690	0	17493
S/G/Y/R/B/O	NT_033896	AL360233	38964133	3			AL392171	39071949	1	64588	0	0	64588
S/G/Y/R/B/O	NT_033896	AL138768	39071949	3	chr10	NT_033896	AL590039	39246354	3	0	1998	0	1998
S/G/Y/R/B/O	NT_033896	AL138768	39071949	3			AC012241	39071949	1	27324	0	0	27324
S/G/Y/R/B/O	NT_033896	AL138768	39071949	3			AL391067	38964133	1	78320	4592	20431	103343
S/G/Y/R/B/O	NT_033896	AL138768	39071949	3			AL392171	38964133	1	122813	2013	0	124826
S/G/Y/R/B/O	NT_033896	AL590039	39246354	3	chr10	NT_033896	AL603963	39322186	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL603963	39322186	3	chr10	NT_033896	AL450337	39337443	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL450337	39337443	3	chr10	NT_033896	AL392046	39509430	3	0	1998	0	1998
S/G/Y/R/B/O	NT_033896	AL450337	39337443	3			AL591026	39509430	1	104242	2605	18870	125717
S/G/Y/R/B/O	NT_033896	AL392046	39509430	3	chr10	NT_033896	AL157783	39655701	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL392046	39509430	3			AL591026	39337443	1	46713	5244	0	51957
S/G/Y/R/B/O	NT_033896	AL392046	39509430	3			AL591118	39337443	1	79154	0	14792	93946
S/G/Y/R/B/O	NT_033896	AL157783	39655701	3	chr10	NT_033896	AL117336	39751344	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL157783	39655701	3			AC022159	39337443	1	56617	0	32135	88752
S/G/Y/R/B/O	NT_033896	AL157783	39655701	3			AL591118	39337443	1	67918	2765	6843	77526
S/G/Y/R/B/O	NT_033896	AL117336	39751344	3	chr10	NT_033896	AL603824	39940034	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL117336	39751344	3			AC022159	39337443	1	17624	0	2469	20093
S/G/Y/R/B/O	NT_033896	AL117336	39751344	3			AL591029	39337443	1	71106	0	0	71106
S/G/Y/R/B/O	NT_033896	AL603824	39940034	3	chr10	NT_033896	AL592445	40027905	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL603824	39940034	3			AC008244	39337443	1	31892	0	0	31892
S/G/Y/R/B/O	NT_033896	AL603824	39940034	3			AL591029	39337443	1	60545	0	7222	67767
S/G/Y/R/B/O	NT_033896	AL592445	40027905	3	chr10	NT_033896	AL121749	40054318	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL592445	40027905	3			AC008244	39337443	1	12561	2200	1041	15802
S/G/Y/R/B/O	NT_033896	AL592445	40027905	3			AL591029	39337443	1	12288	0	0	12288
S/G/Y/R/B/O	NT_033896	AL592445	40027905	3			AL591182	39337443	1	24027	2870	0	26897
S/G/Y/R/B/O	NT_033896	AL121749	40054318	3	chr10	NT_033896	AL358173	40218325	3	0	1998	0	1998
S/G/Y/R/B/O	NT_033896	AL121749	40054318	3			AC008244	39337443	1	97900	0	0	97900
S/G/Y/R/B/O	NT_033896	AL121749	40054318	3			AL591182	40218325	1	107753	3963	18406	130122
S/G/Y/R/B/O	NT_033896	AL358173	40218325	3	chr10	NT_033896	AL356093	40220319	3	0	1998	0	1998
S/G/Y/R/B/O	NT_033896	AL356093	40220319	3	chr10	NT_033896	AL157892	40418856	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL356093	40220319	3			AL392187	40218325	1	149649	0	0	149649
S/G/Y/R/B/O	NT_033896	AL356093	40220319	3			AP000728	40218325	1	88019	28865	17534	134418
S/G/Y/R/B/O	NT_033896	AL157892	40418856	3	chr10	NT_033896	AL365500	40442198	3	0	1995	0	1995
S/G/Y/R/B/O	NT_033896	AL157892	40418856	3			AL392187	40442198	1	18452	0	0	18452
S/G/Y/R/B/O	NT_033896	AL365500	40442198	3	chr10	NT_033896	AL355300	40593753	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL365500	40442198	3			AL392187	40418856	1	48885	0	2949	51834
S/G/Y/R/B/O	NT_033896	AL355300	40593753	3	chr10	NT_033896	AC018684	40733209	3	50054	0	0	50054
S/G/Y/R/B/O	NT_033896	AL355300	40593753	3			AC022619	40733209	1	137378	0	0	137378
S/G/Y/R/B/O	NT_033896	AC018684	40733209	3	chr10	NT_033896	AL390859	40859016	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AC018684	40733209	3			AC022619	40733209	1	78859	1620	0	80479
S/G/Y/R/B/O	NT_033896	AC018684	40733209	3			AL365211	40593753	1	50055	0	0	50055
S/G/Y/R/B/O	NT_033896	AL390859	40859016	3	chr10	NT_033896	AL590730	40974542	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL390859	40859016	3			AL365211	40593753	1	109240	0	0	109240
S/G/Y/R/B/O	NT_033896	AL390859	40859016	3			AL591117	40593753	1	28955	0	0	28955
S/G/Y/R/B/O	NT_033896	AL590730	40974542	3	chr10	NT_033896	AL354660	41158843	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL590730	40974542	3			AL591117	41158843	1	176040	0	0	176040
S/G/Y/R/B/O	NT_033896	AL590730	40974542	3			AL591722	41158843	1	55556	0	0	55556
S/G/Y/R/B/O	NT_033896	AL354660	41158843	3	chr10	NT_033896	AL355517	41188408	2	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL354660	41158843	3			AL591722	40974542	1	31508	0	0	31508
S/G/Y/R/B/O	NT_033896	AL355517	41188408	2	chr10	NT_033896	AL390061	41357756	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL355517	41188408	2			AC025869	40974542	1	53713	5315	6579	65607
S/G/Y/R/B/O	NT_033896	AL355517	41188408	2			AL389918	41158843	1	41531	2630	0	44161
S/G/Y/R/B/O	NT_033896	AL355517	41188408	2			AL441903	41158843	1	44482	0	25342	69824
S/G/Y/R/B/O	NT_033896	AL355517	41188408	2			AL591722	41158843	1	71939	0	10128	82067
S/G/Y/R/B/O	NT_033896	AL390061	41357756	3	chr10	NT_033896	AL591105	41531902	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL390061	41357756	3			AC025869	41158843	1	79318	0	0	79318
S/G/Y/R/B/O	NT_033896	AL390061	41357756	3			AL389918	41158843	1	124074	0	0	124074
S/G/Y/R/B/O	NT_033896	AL390061	41357756	3			AL441903	41158843	1	59823	8835	0	68658
S/G/Y/R/B/O	NT_033896	AL390061	41357756	3			AL591035	41158843	1	115378	7496	33125	155999
S/G/Y/R/B/O	NT_033896	AL591105	41531902	3	chr10	NT_033896	AC067744	41541267	3	0	1992	0	1992
S/G/Y/R/B/O	NT_033896	AC067744	41541267	3	chr10	NT_033896	AL357148	41696322	2	79039	0	0	79039
S/G/Y/R/B/O	NT_033896	AC067744	41541267	3			Z69647	41531902	3	39096	0	0	39096
S/G/Y/R/B/O	NT_033896	AL357148	41696322	2	chr10	NT_033896	AL157387	41759436	3	62327	0	0	62327
S/G/Y/R/B/O	NT_033896	AL357148	41696322	2	chr10	NT_033896	AL391494	43072433	1	130010	2096	0	132106
S/G/Y/R/B/O	NT_033896	AL157387	41759436	3	chr10	NT_033896	AL391686	41909166	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL157387	41759436	3	chr10	NT_033896	AL391494	43072433	1	109116	0	0	109116
S/G/Y/R/B/O	NT_033896	AL391686	41909166	3	chr10	NT_033896	AL133350	41967104	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL391686	41909166	3			AL591121	41759436	1	22604	0	7000	29604
S/G/Y/R/B/O	NT_033896	AL133350	41967104	3	chr10	NT_033896	AL121927	42056837	3	0	0	100	100
S/G/Y/R/B/O	NT_033896	AL133350	41967104	3			AL591121	42056837	1	86314	0	0	86314
S/G/Y/R/B/O	NT_033896	AL121927	42056837	3	chr10	NT_033896	AL132657	42176058	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL121927	42056837	3			AL591121	41967104	1	69902	0	5606	75508
S/G/Y/R/B/O	NT_033896	AL132657	42176058	3	chr10	NT_033896	AL135791	42336701	3	0	0	100	100
S/G/Y/R/B/O	NT_033896	AL132657	42176058	3			AL390779	42336701	1	14672	2557	25811	43040
S/G/Y/R/B/O	NT_033896	AL135791	42336701	3	chr10	NT_033896	AL132659	42403576	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL135791	42336701	3			AF205588	42336701	3	51040	0	0	51040
S/G/Y/R/B/O	NT_033896	AL135791	42336701	3			AL390779	42176058	1	51025	2196	0	53221
S/G/Y/R/B/O	NT_033896	AL132659	42403576	3	chr10	NT_033896	AL117337	42431981	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL132659	42403576	3			AF205588	42176058	3	28459	0	0	28459
S/G/Y/R/B/O	NT_033896	AL132659	42403576	3			AL390779	42176058	1	13795	0	5999	19794
S/G/Y/R/B/O	NT_033896	AL117337	42431981	3	chr10	NT_033896	AL161931	42593333	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL117337	42431981	3			AF205588	42176058	3	160928	0	0	160928
S/G/Y/R/B/O	NT_033896	AL117337	42431981	3			AL390779	42176058	1	62738	0	8569	71307
S/G/Y/R/B/O	NT_033896	AL117337	42431981	3			AL591000	42176058	1	76001	11332	8429	95762
S/G/Y/R/B/O	NT_033896	AL161931	42593333	3	chr10	NT_033896	AL117339	42613086	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL161931	42593333	3			AF205588	42176058	3	19828	0	0	19828
S/G/Y/R/B/O	NT_033896	AL161931	42593333	3			AL591000	42176058	1	14484	2520	0	17004
S/G/Y/R/B/O	NT_033896	AL117339	42613086	3	chr10	NT_033896	AL132658	42821628	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL117339	42613086	3			AF205588	42176058	3	51457	0	0	51457
S/G/Y/R/B/O	NT_033896	AL117339	42613086	3			AL390956	42176058	1	74487	0	0	74487
S/G/Y/R/B/O	NT_033896	AL117339	42613086	3			AL591000	42176058	1	27716	0	6006	33722
S/G/Y/R/B/O	NT_033896	AL117339	42613086	3			AL591107	42176058	1	132609	2735	5496	140840
S/G/Y/R/B/O	NT_033896	AL132658	42821628	3	chr10	NT_033896	AL133217	42841618	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL133217	42841618	3	chr10	NT_033896	AL133216	42905599	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL133217	42841618	3			AL390956	42176058	1	53399	0	0	53399
S/G/Y/R/B/O	NT_033896	AL133217	42841618	3			AL392168	42176058	1	60403	0	0	60403
S/G/Y/R/B/O	NT_033896	AL133216	42905599	3	chr10	NT_033896	AL391494	43072433	1	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL133216	42905599	3			AL390956	215586348	1	29553	0	0	29553
S/G/Y/R/B/O	NT_033896	AL133216	42905599	3			AL392168	215586348	1	82212	2369	28823	113404
S/G/Y/R/B/O	NT_033896	AL391494	43072433	1
S/G/Y/R/B/O	NT_033896	AL391494	43072433	1	chr10	NT_033896	AL157387	41759436	3	109116	0	0	109116
S/G/Y/R/B/O	NT_033896	AL391494	43072433	1	chr10	NT_033896	AL357148	41696322	2	130010	2096	0	132106