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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033984 | AL354684 | 60205912 | 1 | chr10 | NT_033984 | AL603906 | 60262394 | 3 | 33590 | 0 | 3382 | 36972 |
| S/G/Y/R/B/O |
NT_033984 | AL354684 | 60205912 | 1 | chr10 | NT_033984 | AC026884 | 60321674 | 3 | 59045 | 2146 | 1658 | 62849 |
| S/G/Y/R/B/O |
NT_033984 | AL354684 | 60205912 | 1 |   |   | AC006484 | 58394772 | 3 | 44191 | 2424 | 0 | 46615 |
| S/G/Y/R/B/O |
NT_033984 | AL603906 | 60262394 | 3 | chr10 | NT_033984 | AC026884 | 60321674 | 3 | 0 | 1995 | 0 | 1995 |
| S/G/Y/R/B/O |
NT_033984 | AL603906 | 60262394 | 3 |   |   | AC006484 | 60262394 | 3 | 22076 | 0 | 0 | 22076 |
| S/G/Y/R/B/O |
NT_033984 | AC026884 | 60321674 | 3 | chr10 | NT_033984 | AC016396 | 60470259 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033984 | AC026884 | 60321674 | 3 | chr10 | NT_033984 | AL354684 | 60205912 | 1 | 59045 | 2146 | 1658 | 62849 |
| S/G/Y/R/B/O |
NT_033984 | AC026884 | 60321674 | 3 |   |   | AL358155 | 60205912 | 2 | 74356 | 0 | 0 | 74356 |
| S/G/Y/R/B/O |
NT_033984 | AC016396 | 60470259 | 3 | chr10 | NT_033984 | AC023170 | 60611532 | 3 | 21924 | 0 | 0 | 21924 |
| S/G/Y/R/B/O |
NT_033984 | AC016396 | 60470259 | 3 |   |   | AL358155 | 60611532 | 2 | 117580 | 0 | 0 | 117580 |
| S/G/Y/R/B/O |
NT_033984 | AC023170 | 60611532 | 3 | chr10 | NT_033984 | AC012472 | 60785055 | 3 | 3780 | 0 | 0 | 3780 |
| S/G/Y/R/B/O |
NT_033984 | AC023170 | 60611532 | 3 |   |   | AL583857 | 60470259 | 2 | 118037 | 0 | 0 | 118037 |
| S/G/Y/R/B/O |
NT_033984 | AC012472 | 60785055 | 3 | chr10 | NT_033984 | AC012168 | 60958833 | 3 | 31299 | 0 | 0 | 31299 |
| S/G/Y/R/B/O |
NT_033984 | AC012472 | 60785055 | 3 |   |   | AL583857 | 60611532 | 2 | 53804 | 0 | 0 | 53804 |
| S/G/Y/R/B/O |
NT_033984 | AC012168 | 60958833 | 3 | chr10 | NT_033984 | AL607042 | 61102832 | 3 | 0 | 1997 | 0 | 1997 |
| S/G/Y/R/B/O |
NT_033984 | AC012168 | 60958833 | 3 |   |   | AC016363 | 60785055 | 1 | 19158 | 0 | 0 | 19158 |
| S/G/Y/R/B/O |
NT_033984 | AL607042 | 61102832 | 3 | chr10 | NT_033984 | AC091772 | 61153917 | 3 | 32138 | 0 | 0 | 32138 |
| S/G/Y/R/B/O |
NT_033984 | AL607042 | 61102832 | 3 |   |   | AC016363 | 60958833 | 1 | 29486 | 0 | 22305 | 51791 |
| S/G/Y/R/B/O |
NT_033984 | AL607042 | 61102832 | 3 |   |   | AC021718 | 60958833 | 1 | 11700 | 0 | 0 | 11700 |
| S/G/Y/R/B/O |
NT_033984 | AL607042 | 61102832 | 3 |   |   | AC069541 | 60958833 | 3 | 32136 | 0 | 0 | 32136 |
| S/G/Y/R/B/O |
NT_033984 | AC091772 | 61153917 | 3 | chr10 | NT_033984 | AC022539 | 61281608 | 3 | 60015 | 0 | 0 | 60015 |
| S/G/Y/R/B/O |
NT_033984 | AC091772 | 61153917 | 3 |   |   | AC016363 | 61153917 | 1 | 71647 | 2346 | 0 | 73993 |
| S/G/Y/R/B/O |
NT_033984 | AC091772 | 61153917 | 3 |   |   | AC021718 | 61153917 | 1 | 111891 | 2631 | 0 | 114522 |
| S/G/Y/R/B/O |
NT_033984 | AC091772 | 61153917 | 3 |   |   | AC069541 | 61281608 | 3 | 158530 | 0 | 0 | 158530 |
| S/G/Y/R/B/O |
NT_033984 | AC022539 | 61281608 | 3 | chr10 | NT_033984 | AC016398 | 61386229 | 3 | 70184 | 0 | 0 | 70184 |
| S/G/Y/R/B/O |
NT_033984 | AC022539 | 61281608 | 3 |   |   | AC011569 | 61102832 | 1 | 48152 | 2807 | 0 | 50959 |
| S/G/Y/R/B/O |
NT_033984 | AC022539 | 61281608 | 3 |   |   | AC016363 | 61102832 | 1 | 23026 | 0 | 0 | 23026 |
| S/G/Y/R/B/O |
NT_033984 | AC022539 | 61281608 | 3 |   |   | AC021718 | 61386229 | 1 | 17823 | 9955 | 1155 | 28933 |
| S/G/Y/R/B/O |
NT_033984 | AC016398 | 61386229 | 3 | chr10 | NT_033984 | AC025038 | 61474860 | 1 | 28701 | 0 | 0 | 28701 |
| S/G/Y/R/B/O |
NT_033984 | AC016398 | 61386229 | 3 |   |   | AC011569 | 61153917 | 1 | 96431 | 4289 | 26938 | 127658 |
| S/G/Y/R/B/O |
NT_033984 | AC025038 | 61474860 | 1 | chr10 | NT_033984 | AC021447 | 61524383 | 1 | 79470 | 0 | 5033 | 84503 |
| S/G/Y/R/B/O |
NT_033984 | AC025038 | 61474860 | 1 | chr10 | NT_033984 | AL355474 | 61528789 | 3 | 73805 | 0 | 0 | 73805 |
| S/G/Y/R/B/O |
NT_033984 | AC025038 | 61474860 | 1 |   |   | AC011569 | 61474860 | 1 | 19356 | 2791 | 17706 | 39853 |
| S/G/Y/R/B/O |
NT_033984 | AC021447 | 61524383 | 1 | chr10 | NT_033984 | AL355474 | 61528789 | 3 | 84058 | 2001 | 0 | 86059 |
| S/G/Y/R/B/O |
NT_033984 | AC021447 | 61524383 | 1 | chr10 | NT_033984 | AL356099 | 61648983 | 3 | 18797 | 0 | 0 | 18797 |
| S/G/Y/R/B/O |
NT_033984 | AC021447 | 61524383 | 1 |   |   | AC018613 | 61528789 | 1 | 31791 | 0 | 0 | 31791 |
| S/G/Y/R/B/O |
NT_033984 | AL355474 | 61528789 | 3 | chr10 | NT_033984 | AL356099 | 61648983 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033984 | AL355474 | 61528789 | 3 | chr10 | NT_033984 | AC025038 | 61474860 | 1 | 73805 | 0 | 0 | 73805 |
| S/G/Y/R/B/O |
NT_033984 | AL355474 | 61528789 | 3 |   |   | AC018613 | 61648983 | 1 | 40568 | 2257 | 1209 | 44034 |
| S/G/Y/R/B/O |
NT_033984 | AL356099 | 61648983 | 3 | chr10 | NT_033984 | AC026391 | 61810135 | 3 | 66435 | 0 | 0 | 66435 |
| S/G/Y/R/B/O |
NT_033984 | AL356099 | 61648983 | 3 | chr10 | NT_033984 | AC021447 | 61524383 | 1 | 18797 | 0 | 0 | 18797 |
| S/G/Y/R/B/O |
NT_033984 | AL356099 | 61648983 | 3 |   |   | AC018613 | 61474860 | 1 | 103391 | 0 | 1306 | 104697 |
| S/G/Y/R/B/O |
NT_033984 | AC026391 | 61810135 | 3 | chr10 | NT_033984 | AC022027 | 61921230 | 3 | 54219 | 0 | 0 | 54219 |
| S/G/Y/R/B/O |
NT_033984 | AC022027 | 61921230 | 3 | chr10 | NT_033984 | AC060231 | 62022722 | 3 | 85383 | 0 | 0 | 85383 |
| S/G/Y/R/B/O |
NT_033984 | AC060231 | 62022722 | 3 | chr10 | NT_033984 | AC023904 | 62130632 | 3 | 14447 | 0 | 0 | 14447 |
| S/G/Y/R/B/O |
NT_033984 | AC060231 | 62022722 | 3 |   |   | AC016457 | 62022722 | 1 | 16217 | 0 | 34177 | 50394 |
| S/G/Y/R/B/O |
NT_033984 | AC023904 | 62130632 | 3 | chr10 | NT_033984 | AL592430 | 62306856 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033984 | AC023904 | 62130632 | 3 |   |   | AC016457 | 62130632 | 1 | 56714 | 0 | 56869 | 113583 |
| S/G/Y/R/B/O |
NT_033984 | AL592430 | 62306856 | 3 | chr10 | NT_033984 | AL359377 | 62449992 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033984 | AL592430 | 62306856 | 3 |   |   | AC010159 | 159517415 | 1 | 142373 | 2354 | 0 | 144727 |
| S/G/Y/R/B/O |
NT_033984 | AL359377 | 62449992 | 3 | chr10 | NT_033984 | AL359267 | 62620169 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033984 | AL359377 | 62449992 | 3 |   |   | AC021404 | 89577114 | 1 | 97770 | 1546 | 2214 | 101530 |
| S/G/Y/R/B/O |
NT_033984 | AL359267 | 62620169 | 3 | chr10 | NT_033984 | AL391707 | 62737695 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033984 | AL359267 | 62620169 | 3 |   |   | AC021404 | 89577114 | 1 | 54278 | 2122 | 457 | 56857 |
| S/G/Y/R/B/O |
NT_033984 | AL391707 | 62737695 | 3 | chr10 | NT_033984 | AL607065 | 62902521 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033984 | AL391707 | 62737695 | 3 |   |   | AC015642 | 62737695 | 1 | 77202 | 0 | 1400 | 78602 |
| S/G/Y/R/B/O |
NT_033984 | AL607065 | 62902521 | 3 | chr10 | NT_033984 | AC022390 | 62932262 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033984 | AL607065 | 62902521 | 3 |   |   | AC015642 | 62902521 | 1 | 16054 | 0 | 0 | 16054 |
| S/G/Y/R/B/O |
NT_033984 | AC022390 | 62932262 | 3 | chr10 | NT_033984 | AC027678 | 63091475 | 1 | 65450 | 0 | 0 | 65450 |
| S/G/Y/R/B/O |
NT_033984 | AC022390 | 62932262 | 3 |   |   | AC015642 | 62737695 | 1 | 56903 | 0 | 0 | 56903 |
| S/G/Y/R/B/O |
NT_033984 | AC027678 | 63091475 | 1 | chr10 | NT_033984 | AC011197 | 63252953 | 3 | 0 | 0 | 921 | 921 |
| S/G/Y/R/B/O |
NT_033984 | AC011197 | 63252953 | 3 | chr10 | NT_033984 | AL445308 | 63415735 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033984 | AL445308 | 63415735 | 3 | chr10 | NT_033984 | AC024072 | 63474655 | 3 | 0 | 1994 | 0 | 1994 |
| S/G/Y/R/B/O |
NT_033984 | AC024072 | 63474655 | 3 | chr10 | NT_033984 | AL607026 | 63622826 | 2 | 129984 | 0 | 0 | 129984 |
| S/G/Y/R/B/O |
NT_033984 | AL607026 | 63622826 | 2 | chr10 | NT_033984 | AC068892 | 63665750 | 3 | 36710 | 0 | 0 | 36710 |
| S/G/Y/R/B/O |
NT_033984 | AC068892 | 63665750 | 3 | chr10 | NT_033984 | AL356952 | 63788170 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033984 | AL356952 | 63788170 | 3 | chr10 | NT_033984 | AL451049 | 63918120 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033984 | AL356952 | 63788170 | 3 |   |   | AC020682 | 63622826 | 1 | 50222 | 732 | 0 | 50954 |
| S/G/Y/R/B/O |
NT_033984 | AL356952 | 63788170 | 3 |   |   | AC026486 | 63622826 | 1 | 85587 | 1564 | 1046 | 88197 |
| S/G/Y/R/B/O |
NT_033984 | AL451049 | 63918120 | 3 | chr10 | NT_033984 | AC022398 | 64083093 | 3 | 68023 | 0 | 0 | 68023 |
| S/G/Y/R/B/O |
NT_033984 | AL451049 | 63918120 | 3 |   |   | AC020682 | 63665750 | 1 | 100251 | 0 | 0 | 100251 |
| S/G/Y/R/B/O |
NT_033984 | AL451049 | 63918120 | 3 |   |   | AC026486 | 64083093 | 1 | 43998 | 0 | 0 | 43998 |
| S/G/Y/R/B/O |
NT_033984 | AC022398 | 64083093 | 3 | chr10 | NT_033984 | AC067742 | 64184254 | 3 | 82578 | 0 | 0 | 82578 |
| S/G/Y/R/B/O |
NT_033984 | AC022398 | 64083093 | 3 |   |   | AC016224 | 64083093 | 1 | 68762 | 0 | 0 | 68762 |
| S/G/Y/R/B/O |
NT_033984 | AC067742 | 64184254 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033984 | AC067742 | 64184254 | 3 |   |   | AC016224 | 63918120 | 1 | 132706 | 0 | 0 | 132706 |
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