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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033894 | AC044784 | 8799698 | 1 | chr10 | NT_033894 | AC016309 | 8807879 | 1 | 119958 | 4435 | 0 | 124393 |
| S/G/Y/R/B/O |
NT_033894 | AC044784 | 8799698 | 1 |   |   | AL157784 | 8807879 | 1 | 94140 | 0 | 1934 | 96074 |
| S/G/Y/R/B/O |
NT_033894 | AC016309 | 8807879 | 1 | chr10 | NT_033894 | AL365269 | 8987515 | 3 | 17918 | 0 | 0 | 17918 |
| S/G/Y/R/B/O |
NT_033894 | AC016309 | 8807879 | 1 | chr10 | NT_033894 | AL136453 | 9006929 | 3 | 18087 | 0 | 0 | 18087 |
| S/G/Y/R/B/O |
NT_033894 | AC016309 | 8807879 | 1 |   |   | AL157784 | 9006929 | 1 | 25105 | 2599 | 0 | 27704 |
| S/G/Y/R/B/O |
NT_033894 | AL365269 | 8987515 | 3 | chr10 | NT_033894 | AL136453 | 9006929 | 3 | 0 | 1997 | 0 | 1997 |
| S/G/Y/R/B/O |
NT_033894 | AL136453 | 9006929 | 3 | chr10 | NT_033894 | AL138770 | 9103297 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033894 | AL136453 | 9006929 | 3 | chr10 | NT_033894 | AC012544 | 9184692 | 1 | 23398 | 0 | 0 | 23398 |
| S/G/Y/R/B/O |
NT_033894 | AL136453 | 9006929 | 3 | chr10 | NT_033894 | AC016309 | 8807879 | 1 | 18087 | 0 | 0 | 18087 |
| S/G/Y/R/B/O |
NT_033894 | AL138770 | 9103297 | 3 | chr10 | NT_033894 | AL138774 | 9167134 | 1 | 51137 | 0 | 0 | 51137 |
| S/G/Y/R/B/O |
NT_033894 | AL138770 | 9103297 | 3 | chr10 | NT_033894 | AC012544 | 9184692 | 1 | 60834 | 0 | 0 | 60834 |
| S/G/Y/R/B/O |
NT_033894 | AL138774 | 9167134 | 1 | chr10 | NT_033894 | AC012544 | 9184692 | 1 | 76485 | 0 | 4907 | 81392 |
| S/G/Y/R/B/O |
NT_033894 | AL138774 | 9167134 | 1 |   |   | AL139127 | 9103297 | 1 | 35316 | 0 | 0 | 35316 |
| S/G/Y/R/B/O |
NT_033894 | AC012544 | 9184692 | 1 | chr10 | NT_033894 | AL138773 | 9238754 | 3 | 11024 | 0 | 0 | 11024 |
| S/G/Y/R/B/O |
NT_033894 | AC012544 | 9184692 | 1 | chr10 | NT_033894 | AL136453 | 9006929 | 3 | 23398 | 0 | 0 | 23398 |
| S/G/Y/R/B/O |
NT_033894 | AC012544 | 9184692 | 1 | chr10 | NT_033894 | AL138770 | 9103297 | 3 | 60834 | 0 | 0 | 60834 |
| S/G/Y/R/B/O |
NT_033894 | AC012544 | 9184692 | 1 |   |   | AL139127 | 9167134 | 1 | 23777 | 257 | 0 | 24034 |
| S/G/Y/R/B/O |
NT_033894 | AL138773 | 9238754 | 3 | chr10 | NT_033894 | AL355591 | 9364415 | 3 | 0 | 1999 | 0 | 1999 |
| S/G/Y/R/B/O |
NT_033894 | AL138773 | 9238754 | 3 |   |   | AL139127 | 9184692 | 1 | 83798 | 0 | 6287 | 90085 |
| S/G/Y/R/B/O |
NT_033894 | AL355591 | 9364415 | 3 | chr10 | NT_033894 | AL139009 | 9492254 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_033894 | AL139009 | 9492254 | 3 | chr10 | NT_033894 | AL157401 | 9662911 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033894 | AL139009 | 9492254 | 3 |   |   | AL357292 | 9364415 | 2 | 49949 | 0 | 0 | 49949 |
| S/G/Y/R/B/O |
NT_033894 | AL157401 | 9662911 | 3 | chr10 | NT_033894 | AL358214 | 9792621 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033894 | AL157401 | 9662911 | 3 |   |   | AL357292 | 9364415 | 2 | 32287 | 0 | 0 | 32287 |
| S/G/Y/R/B/O |
NT_033894 | AL358214 | 9792621 | 3 | chr10 | NT_033894 | AL392047 | 9973707 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033894 | AL358214 | 9792621 | 3 |   |   | AC027409 | 9792621 | 1 | 25382 | 5123 | 0 | 30505 |
| S/G/Y/R/B/O |
NT_033894 | AL392047 | 9973707 | 3 | chr10 | NT_033894 | AL138775 | 10031021 | 3 | 0 | 1997 | 0 | 1997 |
| S/G/Y/R/B/O |
NT_033894 | AL392047 | 9973707 | 3 |   |   | AC027409 | 9662911 | 1 | 54156 | 1685 | 0 | 55841 |
| S/G/Y/R/B/O |
NT_033894 | AL138775 | 10031021 | 3 | chr10 | NT_033894 | AL136318 | 10144323 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033894 | AL138775 | 10031021 | 3 |   |   | AC027409 | 10031021 | 1 | 81523 | 6652 | 0 | 88175 |
| S/G/Y/R/B/O |
NT_033894 | AL136318 | 10144323 | 3 | chr10 | NT_033894 | AL512657 | 10199507 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033894 | AL512657 | 10199507 | 3 | chr10 | NT_033894 | AL354916 | 10203296 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033894 | AL354916 | 10203296 | 3 | chr10 | NT_033894 | AL583859 | 10341444 | 2 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033894 | AL583859 | 10341444 | 2 | chr10 | NT_033894 | AL138772 | 10507054 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033894 | AL583859 | 10341444 | 2 |   |   | AL360234 | 10203296 | 1 | 122637 | 0 | 0 | 122637 |
| S/G/Y/R/B/O |
NT_033894 | AL138772 | 10507054 | 3 | chr10 | NT_033894 | AL158836 | 10562789 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033894 | AL158836 | 10562789 | 3 | chr10 | NT_033894 | AL136319 | 10625185 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033894 | AL136319 | 10625185 | 3 | chr10 | NT_033894 | AL136452 | 10743514 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033894 | AL136452 | 10743514 | 3 | chr10 | NT_033894 | AL136369 | 10890519 | 3 | 0 | 0 | 102 | 102 |
| S/G/Y/R/B/O |
NT_033894 | AL136369 | 10890519 | 3 | chr10 | NT_033894 | AL162408 | 11001368 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033894 | AL136369 | 10890519 | 3 |   |   | AF314199 | 10890519 | 3 | 22709 | 0 | 0 | 22709 |
| S/G/Y/R/B/O |
NT_033894 | AL162408 | 11001368 | 3 | chr10 | NT_033894 | AL138769 | 11027573 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033894 | AL162408 | 11001368 | 3 |   |   | AF314199 | 10743514 | 3 | 28106 | 0 | 0 | 28106 |
| S/G/Y/R/B/O |
NT_033894 | AL138769 | 11027573 | 3 | chr10 | NT_033894 | AL136320 | 11126073 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033894 | AL138769 | 11027573 | 3 | chr10 | NT_033894 | AL157704 | 11181523 | 1 | 26260 | 0 | 0 | 26260 |
| S/G/Y/R/B/O |
NT_033894 | AL138769 | 11027573 | 3 |   |   | AF314199 | 10743514 | 3 | 11992 | 0 | 0 | 11992 |
| S/G/Y/R/B/O |
NT_033894 | AL136320 | 11126073 | 3 | chr10 | NT_033894 | AL157704 | 11181523 | 1 | 50206 | 1573 | 0 | 51779 |
| S/G/Y/R/B/O |
NT_033894 | AL136320 | 11126073 | 3 |   |   | AF295063 | 11181523 | 3 | 55550 | 0 | 0 | 55550 |
| S/G/Y/R/B/O |
NT_033894 | AL157704 | 11181523 | 1 | chr10 | NT_033894 | AC026887 | 11231974 | 3 | 31366 | 0 | 0 | 31366 |
| S/G/Y/R/B/O |
NT_033894 | AL157704 | 11181523 | 1 | chr10 | NT_033894 | AL138769 | 11027573 | 3 | 26260 | 0 | 0 | 26260 |
| S/G/Y/R/B/O |
NT_033894 | AL157704 | 11181523 | 1 |   |   | AF295063 | 81684736 | 3 | 44418 | 1573 | 5854 | 51845 |
| S/G/Y/R/B/O |
NT_033894 | AL157704 | 11181523 | 1 |   |   | AF295066 | 81684736 | 3 | 16553 | 0 | 3012 | 19565 |
| S/G/Y/R/B/O |
NT_033894 | AC026887 | 11231974 | 3 | chr10 | NT_033894 | AL590416 | 11403255 | 2 | 16207 | 0 | 0 | 16207 |
| S/G/Y/R/B/O |
NT_033894 | AC026887 | 11231974 | 3 |   |   | AC015907 | 11027573 | 1 | 100773 | 0 | 0 | 100773 |
| S/G/Y/R/B/O |
NT_033894 | AC026887 | 11231974 | 3 |   |   | AC026392 | 11027573 | 1 | 84422 | 0 | 0 | 84422 |
| S/G/Y/R/B/O |
NT_033894 | AC026887 | 11231974 | 3 |   |   | AF295066 | 81684736 | 3 | 22420 | 0 | 0 | 22420 |
| S/G/Y/R/B/O |
NT_033894 | AC026887 | 11231974 | 3 |   |   | AF295068 | 81684736 | 3 | 78226 | 0 | 0 | 78226 |
| S/G/Y/R/B/O |
NT_033894 | AL590416 | 11403255 | 2 | chr10 | NT_033894 | AL512631 | 11574281 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033894 | AL590416 | 11403255 | 2 |   |   | AC015907 | 11403255 | 1 | 75953 | 9120 | 10709 | 95782 |
| S/G/Y/R/B/O |
NT_033894 | AL590416 | 11403255 | 2 |   |   | AC026392 | 11403255 | 1 | 11064 | 0 | 80217 | 91281 |
| S/G/Y/R/B/O |
NT_033894 | AL512631 | 11574281 | 3 | chr10 | NT_033894 | AL138898 | 11715144 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033894 | AL138898 | 11715144 | 3 | chr10 | NT_033894 | AL645617 | 11919731 | 3 | 0 | 967 | 0 | 967 |
| S/G/Y/R/B/O |
NT_033894 | AL645617 | 11919731 | 3 | chr10 | NT_033894 | AC073160 | 11995049 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033894 | AL645617 | 11919731 | 3 |   |   | AC027507 | 11919731 | 1 | 63906 | 7249 | 1856 | 73011 |
| S/G/Y/R/B/O |
NT_033894 | AC073160 | 11995049 | 3 | chr10 | NT_033894 | AL512770 | 12180866 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033894 | AC073160 | 11995049 | 3 |   |   | AC027507 | 11715144 | 1 | 34797 | 31709 | 14036 | 80542 |
| S/G/Y/R/B/O |
NT_033894 | AL512770 | 12180866 | 3 | chr10 | NT_033894 | AL391314 | 12306012 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033894 | AL391314 | 12306012 | 3 | chr10 | NT_033894 | AL603717 | 12433447 | 3 | 0 | 1996 | 0 | 1996 |
| S/G/Y/R/B/O |
NT_033894 | AL391314 | 12306012 | 3 | chr10 | NT_033894 | AC084688 | 12550826 | 1 | 47334 | 14759 | 9267 | 71360 |
| S/G/Y/R/B/O |
NT_033894 | AL391314 | 12306012 | 3 |   |   | AL158079 | 12550826 | 1 | 25608 | 0 | 0 | 25608 |
| S/G/Y/R/B/O |
NT_033894 | AL603717 | 12433447 | 3 | chr10 | NT_033894 | AL512284 | 12438805 | 3 | 0 | 1992 | 0 | 1992 |
| S/G/Y/R/B/O |
NT_033894 | AL512284 | 12438805 | 3 | chr10 | NT_033894 | AC084688 | 12550826 | 1 | 31253 | 5368 | 10226 | 46847 |
| S/G/Y/R/B/O |
NT_033894 | AL512284 | 12438805 | 3 |   |   | AL158079 | 12550826 | 1 | 91055 | 0 | 19160 | 110215 |
| S/G/Y/R/B/O |
NT_033894 | AC084688 | 12550826 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033894 | AC084688 | 12550826 | 1 | chr10 | NT_033894 | AL391314 | 12306012 | 3 | 47334 | 14759 | 9267 | 71360 |
| S/G/Y/R/B/O |
NT_033894 | AC084688 | 12550826 | 1 |   |   | AL158079 | 66009351 | 1 | 32115 | 7563 | 5353 | 45031 |
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