Chromosome 10 - Clone Overlaps

Chromosome 10 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_024115	NT_024081	NT_033983	NT_033894	NT_033916	NT_008705	NT_033921	NT_033986
NT_033892	NT_033226	NT_033223	NT_033227	NT_033912	NT_033982	NT_033988	NT_033896
NT_024133	NT_033987	NT_033985	NT_031847	NT_030066	NT_030772	NT_033228	NT_008646
NT_017696	NT_031860	NT_033898	NT_033920	NT_008748	NT_033222	NT_033990	NT_024085
NT_033984	NT_008797	NT_033897	NT_008583	NT_033220	NT_033891	NT_033895	NT_033917
NT_033989	NT_033918	NT_033919	NT_033893	NT_024037	NT_030075	NT_033890	NT_024064
NT_030070	NT_008769	NT_033229	NT_030059	NT_008818	NT_033221	NT_031855	NT_031856
NT_008902	NT_030764	NT_027097	NT_024086	NT_025835	NT_033224	NT_033225	NT_024040
NT_017795	NT_028298

NT_033890

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_033890	AC069537	81684736	1	chr10	NT_033890	AC023291	81708215	1	0	0	0	0
S/G/Y/R/B/O	NT_033890	AC069537	81684736	1	chr10	NT_033890	AC010163	81815799	3	10031	0	0	10031
S/G/Y/R/B/O	NT_033890	AC069537	81684736	1	chr10	NT_030075	AC010199	78371703	1	39097	0	0	39097
S/G/Y/R/B/O	NT_033890	AC069537	81684736	1	chr10	NT_030075	AC022393	78266393	1	82221	0	0	82221
S/G/Y/R/B/O	NT_033890	AC023291	81708215	1	chr10	NT_033890	AC010163	81815799	3	0	0	0	0
S/G/Y/R/B/O	NT_033890	AC023291	81708215	1	chr10	NT_033890	AC013242	84457077	1	89128	3664	7372	100164
S/G/Y/R/B/O	NT_033890	AC023291	81708215	1	chr10	NT_033890	AL356154	84608063	2	42391	9607	16493	68491
S/G/Y/R/B/O	NT_033890	AC010163	81815799	3	chr10	NT_033890	AC012560	81972868	3	52450	0	0	52450
S/G/Y/R/B/O	NT_033890	AC010163	81815799	3	chr10	NT_033890	AC069537	81684736	1	10031	0	0	10031
S/G/Y/R/B/O	NT_033890	AC010163	81815799	3			AC055756	81972868	1	47762	0	7666	55428
S/G/Y/R/B/O	NT_033890	AC012560	81972868	3	chr10	NT_033890	AL583852	82091293	3	0	1991	0	1991
S/G/Y/R/B/O	NT_033890	AC012560	81972868	3			AC012084	81815799	1	88448	0	0	88448
S/G/Y/R/B/O	NT_033890	AC012560	81972868	3			AC055756	81815799	1	114604	2764	24594	141962
S/G/Y/R/B/O	NT_033890	AC012560	81972868	3			AC073371	81815799	1	52760	0	37142	89902
S/G/Y/R/B/O	NT_033890	AL583852	82091293	3	chr10	NT_033890	AC016820	82146003	3	54241	0	0	54241
S/G/Y/R/B/O	NT_033890	AL583852	82091293	3			AC011795	82091293	1	19946	0	0	19946
S/G/Y/R/B/O	NT_033890	AL583852	82091293	3			AC012084	82091293	1	56698	0	0	56698
S/G/Y/R/B/O	NT_033890	AL583852	82091293	3			AC023800	82146003	1	17505	0	0	17505
S/G/Y/R/B/O	NT_033890	AL583852	82091293	3			AC055756	82146003	1	20140	0	0	20140
S/G/Y/R/B/O	NT_033890	AL583852	82091293	3			AC073371	82146003	1	42841	4536	1627	49004
S/G/Y/R/B/O	NT_033890	AC016820	82146003	3	chr10	NT_033890	AC013419	82286124	1	0	0	0	0
S/G/Y/R/B/O	NT_033890	AC016820	82146003	3			AC010187	82146003	1	106814	0	33915	140729
S/G/Y/R/B/O	NT_033890	AC016820	82146003	3			AC011795	82146003	1	93767	1738	36747	132252
S/G/Y/R/B/O	NT_033890	AC016820	82146003	3			AC012084	82146003	1	78725	0	0	78725
S/G/Y/R/B/O	NT_033890	AC016820	82146003	3			AC023800	82146003	1	84812	2881	46021	133714
S/G/Y/R/B/O	NT_033890	AC016820	82146003	3			AC073371	82146003	1	39180	5395	4257	48832
S/G/Y/R/B/O	NT_033890	AC016820	82146003	3			AC074323	82146003	1	73500	0	0	73500
S/G/Y/R/B/O	NT_033890	AC013419	82286124	1	chr10	NT_033890	AC010195	82354889	1	62009	0	6905	68914
S/G/Y/R/B/O	NT_033890	AC013419	82286124	1	chr10	NT_033890	AL358034	82367431	3	10554	0	23157	33711
S/G/Y/R/B/O	NT_033890	AC013419	82286124	1			AC010187	82091293	1	73893	0	0	73893
S/G/Y/R/B/O	NT_033890	AC013419	82286124	1			AC011795	82354889	1	54284	0	16639	70923
S/G/Y/R/B/O	NT_033890	AC013419	82286124	1			AC023800	82354889	1	40967	2881	26389	70237
S/G/Y/R/B/O	NT_033890	AC013419	82286124	1			AC074323	82354889	1	124547	0	0	124547
S/G/Y/R/B/O	NT_033890	AC010195	82354889	1	chr10	NT_033890	AL358034	82367431	3	108256	0	0	108256
S/G/Y/R/B/O	NT_033890	AC010195	82354889	1			AC074323	82286124	1	61022	0	0	61022
S/G/Y/R/B/O	NT_033890	AL358034	82367431	3	chr10	NT_033890	AL450398	82475804	3	0	0	0	0
S/G/Y/R/B/O	NT_033890	AL358034	82367431	3	chr10	NT_033890	AC013419	82286124	1	10554	0	23157	33711
S/G/Y/R/B/O	NT_033890	AL450398	82475804	3	chr10	NT_033890	AL356753	82528867	3	0	0	0	0
S/G/Y/R/B/O	NT_033890	AL450398	82475804	3	chr10	NT_033890	AC013253	82752299	1	53596	0	0	53596
S/G/Y/R/B/O	NT_033890	AL356753	82528867	3	chr10	NT_033890	AL358782	82710327	3	0	0	0	0
S/G/Y/R/B/O	NT_033890	AL356753	82528867	3	chr10	NT_033890	AC012465	82754054	1	104643	5619	18512	128774
S/G/Y/R/B/O	NT_033890	AL356753	82528867	3	chr10	NT_033890	AC013253	82752299	1	56828	0	32851	89679
S/G/Y/R/B/O	NT_033890	AL358782	82710327	3	chr10	NT_033890	AC013253	82752299	1	0	0	0	0
S/G/Y/R/B/O	NT_033890	AL358782	82710327	3	chr10	NT_033890	AC012465	82754054	1	33639	0	0	33639
S/G/Y/R/B/O	NT_033890	AL358782	82710327	3			AL139242	82754054	1	43855	0	0	43855
S/G/Y/R/B/O	NT_033890	AC013253	82752299	1	chr10	NT_033890	AC012465	82754054	1	13733	2162	2229	18124
S/G/Y/R/B/O	NT_033890	AC013253	82752299	1	chr10	NT_033890	AL356753	82528867	3	56828	0	32851	89679
S/G/Y/R/B/O	NT_033890	AC013253	82752299	1	chr10	NT_033890	AL450398	82475804	3	53596	0	0	53596
S/G/Y/R/B/O	NT_033890	AC012465	82754054	1	chr10	NT_033890	AL391665	82755791	2	4615	0	0	4615
S/G/Y/R/B/O	NT_033890	AC012465	82754054	1	chr10	NT_033890	AL356753	82528867	3	104643	5619	18512	128774
S/G/Y/R/B/O	NT_033890	AC012465	82754054	1	chr10	NT_033890	AL358782	82710327	3	33639	0	0	33639
S/G/Y/R/B/O	NT_033890	AC012465	82754054	1			AL139242	82752299	1	40862	0	6088	46950
S/G/Y/R/B/O	NT_033890	AL391665	82755791	2	chr10	NT_033890	AL133481	82913648	3	38586	0	0	38586
S/G/Y/R/B/O	NT_033890	AL391665	82755791	2			AC078775	94096964	1	28407	0	2915	31322
S/G/Y/R/B/O	NT_033890	AL391665	82755791	2			AL139242	82913648	1	102775	2091	19124	123990
S/G/Y/R/B/O	NT_033890	AL133481	82913648	3	chr10	NT_033890	AC068139	83056996	3	0	1986	0	1986
S/G/Y/R/B/O	NT_033890	AL133481	82913648	3			AC006108	82710327	2	39788	0	0	39788
S/G/Y/R/B/O	NT_033890	AL133481	82913648	3			AC078775	83056996	1	100770	7836	19974	128580
S/G/Y/R/B/O	NT_033890	AC068139	83056996	3	chr10	NT_033890	AL132656	83233784	3	21981	0	0	21981
S/G/Y/R/B/O	NT_033890	AC068139	83056996	3			AC010194	82755791	1	143054	0	0	143054
S/G/Y/R/B/O	NT_033890	AC068139	83056996	3			AC078775	94096964	1	24983	0	0	24983
S/G/Y/R/B/O	NT_033890	AL132656	83233784	3	chr10	NT_033890	AL603703	83365048	3	0	0	1974	1974
S/G/Y/R/B/O	NT_033890	AL132656	83233784	3			AC010194	82913648	1	70355	0	0	70355
S/G/Y/R/B/O	NT_033890	AL603703	83365048	3	chr10	NT_033890	AL135925	83367042	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033890	AL135925	83367042	3	chr10	NT_033890	AL512662	83425191	3	0	0	0	0
S/G/Y/R/B/O	NT_033890	AL512662	83425191	3	chr10	NT_033890	AL356095	83559502	3	0	0	100	100
S/G/Y/R/B/O	NT_033890	AL356095	83559502	3	chr10	NT_033890	AL513174	83731481	3	0	1999	0	1999
S/G/Y/R/B/O	NT_033890	AL356095	83559502	3			AC012043	83559502	1	59423	1869	19132	80424
S/G/Y/R/B/O	NT_033890	AL356095	83559502	3			AL357792	83559502	1	42405	2689	0	45094
S/G/Y/R/B/O	NT_033890	AL513174	83731481	3	chr10	NT_033890	AL359195	83809965	3	0	0	0	0
S/G/Y/R/B/O	NT_033890	AL513174	83731481	3			AC012043	83731481	1	46681	0	29674	76355
S/G/Y/R/B/O	NT_033890	AL513174	83731481	3			AL357792	83559502	1	40604	6640	2241	49485
S/G/Y/R/B/O	NT_033890	AL359195	83809965	3	chr10	NT_033890	AC021028	83979113	1	8779	0	0	8779
S/G/Y/R/B/O	NT_033890	AL359195	83809965	3			AC012043	83559502	1	10387	0	0	10387
S/G/Y/R/B/O	NT_033890	AL359195	83809965	3			AL357792	83979113	1	53569	2251	13695	69515
S/G/Y/R/B/O	NT_033890	AC021028	83979113	1	chr10	NT_033890	AC063966	84132550	1	2648	1964	31468	36080
S/G/Y/R/B/O	NT_033890	AC063966	84132550	1	chr10	NT_033890	AC016818	84220265	1	3505	0	0	3505
S/G/Y/R/B/O	NT_033890	AC016818	84220265	1	chr10	NT_033890	AC009405	84220266	3	23060	16588	111600	151248
S/G/Y/R/B/O	NT_033890	AC016818	84220265	1	chr10	NT_033890	AC027673	84287525	3	19606	13846	61818	95270
S/G/Y/R/B/O	NT_033890	AC009405	84220266	3	chr10	NT_033890	AC027673	84287525	3	118979	0	0	118979
S/G/Y/R/B/O	NT_033890	AC027673	84287525	3	chr10	NT_033890	AC013242	84457077	1	19186	0	0	19186
S/G/Y/R/B/O	NT_033890	AC027673	84287525	3	chr10	NT_033890	AC016818	84220265	1	19606	13846	61818	95270
S/G/Y/R/B/O	NT_033890	AC013242	84457077	1	chr10	NT_033890	AL356154	84608063	2	0	1451	0	1451
S/G/Y/R/B/O	NT_033890	AC013242	84457077	1	chr10	NT_033890	AC023291	81708215	1	89128	3664	7372	100164
S/G/Y/R/B/O	NT_033890	AL356154	84608063	2	chr10	NT_033890	AL356307	84764329	3	0	2000	0	2000
S/G/Y/R/B/O	NT_033890	AL356154	84608063	2	chr10	NT_033890	AC023291	81708215	1	42391	9607	16493	68491
S/G/Y/R/B/O	NT_033890	AL356307	84764329	3	chr10	NT_033890	AL512627	84845868	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033890	AL512627	84845868	3	chr10	NT_033890	AL161650	84870947	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033890	AL161650	84870947	3	chr10	NT_033890	AL096707	85007750	3	0	1994	0	1994
S/G/Y/R/B/O	NT_033890	AL161650	84870947	3			AC114312	84764329	2	27648	0	0	27648
S/G/Y/R/B/O	NT_033890	AL096707	85007750	3	chr10	NT_033890	AL356795	85160219	3	0	0	100	100
S/G/Y/R/B/O	NT_033890	AL096707	85007750	3			AC114312	84845868	2	147092	1755	0	148847
S/G/Y/R/B/O	NT_033890	AL356795	85160219	3	chr10	NT_033890	AL096704	85232256	3	0	0	0	0
S/G/Y/R/B/O	NT_033890	AL096704	85232256	3	chr10	NT_033890	AL096706	85328426	3	0	0	0	0
S/G/Y/R/B/O	NT_033890	AL096706	85328426	3	chr10	NT_033890	AL096863	85445556	3	0	0	100	100
S/G/Y/R/B/O	NT_033890	AL096863	85445556	3	chr10	NT_033890	AL096864	85544274	3	0	0	100	100
S/G/Y/R/B/O	NT_033890	AL096864	85544274	3	chr10	NT_033890	AL096705	85639433	3	0	0	101	101
S/G/Y/R/B/O	NT_033890	AL096705	85639433	3	chr10	NT_033890	AC010157	85749197	3	76830	0	0	76830
S/G/Y/R/B/O	NT_033890	AC010157	85749197	3	chr10	NT_033890	AL356129	85832568	3	0	1993	0	1993
S/G/Y/R/B/O	NT_033890	AL356129	85832568	3	chr10	NT_033890	AL391478	85864824	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033890	AL391478	85864824	3	chr10	NT_033890	AL513316	86043449	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033890	AL513316	86043449	3	chr10	NT_033890	AL358552	86059351	3	0	1994	0	1994
S/G/Y/R/B/O	NT_033890	AL358552	86059351	3	chr10	NT_033890	AL513204	86221496	3	0	0	0	0
S/G/Y/R/B/O	NT_033890	AL358552	86059351	3			AC022746	85864824	2	161678	0	0	161678
S/G/Y/R/B/O	NT_033890	AL513204	86221496	3	chr10	NT_033890	AL354749	86332569	3	36896	0	0	36896
S/G/Y/R/B/O	NT_033890	AL513204	86221496	3			AC025673	86043449	1	41409	0	0	41409
S/G/Y/R/B/O	NT_033890	AL513204	86221496	3			AL355813	86332569	1	76126	0	0	76126
S/G/Y/R/B/O	NT_033890	AL354749	86332569	3	chr10	NT_033890	AL136085	86491673	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033890	AL354749	86332569	3			AC025673	86332569	1	112612	7507	0	120119
S/G/Y/R/B/O	NT_033890	AL354749	86332569	3			AL355813	86491673	1	85583	2191	0	87774
S/G/Y/R/B/O	NT_033890	AL136085	86491673	3	chr10	NT_033890	AL589782	86538433	3	0	1999	0	1999
S/G/Y/R/B/O	NT_033890	AL589782	86538433	3	chr10	NT_033890	AL592302	86713857	3	0	0	0	0
S/G/Y/R/B/O	NT_033890	AL589782	86538433	3			AL358772	86491673	1	79087	0	0	79087
S/G/Y/R/B/O	NT_033890	AL592302	86713857	3	chr10	NT_033890	AL451146	86791160	1	0	0	0	0
S/G/Y/R/B/O	NT_033890	AL592302	86713857	3			AL358772	86491673	1	79245	0	0	79245
S/G/Y/R/B/O	NT_033890	AL451146	86791160	1	chr10	NT_033890	AL356140	86990051	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033890	AL451146	86791160	1			AL358772	86990051	1	17545	0	0	17545
S/G/Y/R/B/O	NT_033890	AL356140	86990051	3	chr10	NT_033890	AL138763	87128019	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033890	AL138763	87128019	3	chr10	NT_033890	AL354918	87208441	3	0	1998	0	1998
S/G/Y/R/B/O	NT_033890	AL354918	87208441	3	chr10	NT_033890	AC069540	87215076	3	2006	0	0	2006
S/G/Y/R/B/O	NT_033890	AC069540	87215076	3
S/G/Y/R/B/O	NT_033890	AC069540	87215076	3			AC068895	87128019	1	165321	0	6926	172247