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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033892 | AL158209 | 21657076 | 3 | chr10 | NT_033892 | AL358780 | 21718025 | 1 | 71054 | 0 | 0 | 71054 |
| S/G/Y/R/B/O |
NT_033892 | AL358780 | 21718025 | 1 | chr10 | NT_033892 | AL161799 | 21875923 | 3 | 23720 | 0 | 0 | 23720 |
| S/G/Y/R/B/O |
NT_033892 | AL161799 | 21875923 | 3 | chr10 | NT_033892 | AL357372 | 22015919 | 3 | 0 | 1999 | 0 | 1999 |
| S/G/Y/R/B/O |
NT_033892 | AL357372 | 22015919 | 3 | chr10 | NT_033892 | AL359697 | 22057472 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033892 | AL359697 | 22057472 | 3 | chr10 | NT_033892 | AL445431 | 22227340 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033892 | AL359697 | 22057472 | 3 |   |   | AC044809 | 21875923 | 1 | 81920 | 2862 | 7148 | 91930 |
| S/G/Y/R/B/O |
NT_033892 | AL359697 | 22057472 | 3 |   |   | AL592440 | 22227340 | 1 | 167821 | 0 | 0 | 167821 |
| S/G/Y/R/B/O |
NT_033892 | AL445431 | 22227340 | 3 | chr10 | NT_033892 | AL596115 | 22363993 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033892 | AL445431 | 22227340 | 3 |   |   | AC044809 | 22227340 | 1 | 70084 | 0 | 0 | 70084 |
| S/G/Y/R/B/O |
NT_033892 | AL596115 | 22363993 | 3 | chr10 | NT_033892 | AL157831 | 22391250 | 3 | 0 | 1994 | 0 | 1994 |
| S/G/Y/R/B/O |
NT_033892 | AL157831 | 22391250 | 3 | chr10 | NT_033892 | AL158211 | 22565827 | 1 | 45055 | 0 | 0 | 45055 |
| S/G/Y/R/B/O |
NT_033892 | AL158211 | 22565827 | 1 | chr10 | NT_033892 | AL513128 | 22699995 | 3 | 16111 | 0 | 0 | 16111 |
| S/G/Y/R/B/O |
NT_033892 | AL158211 | 22565827 | 1 |   |   | AL360216 | 22391250 | 1 | 39867 | 4831 | 34155 | 78853 |
| S/G/Y/R/B/O |
NT_033892 | AL513128 | 22699995 | 3 | chr10 | NT_033892 | AL157707 | 22884680 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033892 | AL513128 | 22699995 | 3 |   |   | AL360216 | 22565827 | 1 | 22481 | 0 | 71889 | 94370 |
| S/G/Y/R/B/O |
NT_033892 | AL157707 | 22884680 | 3 | chr10 | NT_033892 | AL390318 | 22932113 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033892 | AL157707 | 22884680 | 3 |   |   | AC010161 | 22565827 | 1 | 15772 | 0 | 0 | 15772 |
| S/G/Y/R/B/O |
NT_033892 | AL390318 | 22932113 | 3 | chr10 | NT_033892 | AL359375 | 23095070 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033892 | AL359375 | 23095070 | 3 | chr10 | NT_033892 | AC079269 | 23219916 | 3 | 106175 | 0 | 0 | 106175 |
| S/G/Y/R/B/O |
NT_033892 | AC079269 | 23219916 | 3 | chr10 | NT_033892 | AL139815 | 23309738 | 3 | 0 | 1993 | 0 | 1993 |
| S/G/Y/R/B/O |
NT_033892 | AC079269 | 23219916 | 3 |   |   | AC022247 | 22932113 | 1 | 61268 | 3389 | 0 | 64657 |
| S/G/Y/R/B/O |
NT_033892 | AC079269 | 23219916 | 3 |   |   | AL365507 | 23095070 | 1 | 37624 | 1990 | 3960 | 43574 |
| S/G/Y/R/B/O |
NT_033892 | AL139815 | 23309738 | 3 | chr10 | NT_033892 | AL139281 | 23402760 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033892 | AL139815 | 23309738 | 3 |   |   | AC022247 | 23095070 | 1 | 93230 | 0 | 0 | 93230 |
| S/G/Y/R/B/O |
NT_033892 | AL139815 | 23309738 | 3 |   |   | AL365507 | 23219916 | 1 | 49145 | 7750 | 11036 | 67931 |
| S/G/Y/R/B/O |
NT_033892 | AL139281 | 23402760 | 2 | chr10 | NT_033892 | AL592296 | 23577543 | 2 | 103170 | 0 | 0 | 103170 |
| S/G/Y/R/B/O |
NT_033892 | AL139281 | 23402760 | 2 |   |   | AC022247 | 23219916 | 1 | 17027 | 0 | 0 | 17027 |
| S/G/Y/R/B/O |
NT_033892 | AL139281 | 23402760 | 2 |   |   | AL365507 | 23219916 | 1 | 15068 | 2405 | 16882 | 34355 |
| S/G/Y/R/B/O |
NT_033892 | AL592296 | 23577543 | 2 | chr10 | NT_033892 | AL606469 | 23633468 | 2 | 19166 | 0 | 0 | 19166 |
| S/G/Y/R/B/O |
NT_033892 | AL606469 | 23633468 | 2 | chr10 | NT_033892 | AL512603 | 23751717 | 1 | 59868 | 0 | 0 | 59868 |
| S/G/Y/R/B/O |
NT_033892 | AL606469 | 23633468 | 2 |   |   | AC046190 | 40369700 | 1 | 76970 | 37122 | 7302 | 121394 |
| S/G/Y/R/B/O |
NT_033892 | AL512603 | 23751717 | 1 | chr10 | NT_033892 | AL353650 | 23932634 | 3 | 3264 | 0 | 0 | 3264 |
| S/G/Y/R/B/O |
NT_033892 | AL512603 | 23751717 | 1 |   |   | AC046190 | 40369700 | 1 | 45178 | 18582 | 7655 | 71415 |
| S/G/Y/R/B/O |
NT_033892 | AL512603 | 23751717 | 1 |   |   | AL356418 | 24017412 | 1 | 86902 | 2347 | 29402 | 118651 |
| S/G/Y/R/B/O |
NT_033892 | AL353650 | 23932634 | 3 | chr10 | NT_033892 | AL355977 | 24017412 | 1 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033892 | AL353650 | 23932634 | 3 |   |   | AL356418 | 24017412 | 1 | 46101 | 2070 | 0 | 48171 |
| S/G/Y/R/B/O |
NT_033892 | AL355977 | 24017412 | 1 | chr10 | NT_033892 | AL391499 | 24188679 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033892 | AL391499 | 24188679 | 3 | chr10 | NT_033892 | AL356477 | 24331429 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033892 | AL356477 | 24331429 | 3 | chr10 | NT_033892 | AL157781 | 24358450 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033892 | AL157781 | 24358450 | 3 | chr10 | NT_033892 | AC063961 | 24475952 | 3 | 3421 | 0 | 0 | 3421 |
| S/G/Y/R/B/O |
NT_033892 | AC063961 | 24475952 | 3 | chr10 | NT_033892 | AL356113 | 24556342 | 3 | 63345 | 0 | 0 | 63345 |
| S/G/Y/R/B/O |
NT_033892 | AC063961 | 24475952 | 3 |   |   | AC002559 | 24331429 | 3 | 23934 | 0 | 0 | 23934 |
| S/G/Y/R/B/O |
NT_033892 | AL356113 | 24556342 | 3 | chr10 | NT_033892 | AL353583 | 24746771 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033892 | AL356113 | 24556342 | 3 |   |   | AC002559 | 24556342 | 3 | 90724 | 0 | 0 | 90724 |
| S/G/Y/R/B/O |
NT_033892 | AL353583 | 24746771 | 3 | chr10 | NT_033892 | AL392104 | 24863677 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_033892 | AL392104 | 24863677 | 3 | chr10 | NT_033892 | AL355979 | 25028320 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033892 | AL355979 | 25028320 | 3 | chr10 | NT_033892 | AL157385 | 25132943 | 3 | 0 | 1997 | 0 | 1997 |
| S/G/Y/R/B/O |
NT_033892 | AL157385 | 25132943 | 3 | chr10 | NT_033892 | AL512598 | 25261590 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033892 | AL512598 | 25261590 | 3 | chr10 | NT_033892 | AL139821 | 25399081 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033892 | AL139821 | 25399081 | 3 | chr10 | NT_033892 | AL354976 | 25560761 | 3 | 12116 | 0 | 0 | 12116 |
| S/G/Y/R/B/O |
NT_033892 | AL139821 | 25399081 | 3 |   |   | AL358932 | 25560761 | 1 | 35835 | 8176 | 3422 | 47433 |
| S/G/Y/R/B/O |
NT_033892 | AL139821 | 25399081 | 3 |   |   | AL445244 | 25560761 | 1 | 44280 | 0 | 0 | 44280 |
| S/G/Y/R/B/O |
NT_033892 | AL354976 | 25560761 | 3 | chr10 | NT_033892 | AL161654 | 25676409 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033892 | AL354976 | 25560761 | 3 |   |   | AL358932 | 25399081 | 1 | 51618 | 2368 | 3233 | 57219 |
| S/G/Y/R/B/O |
NT_033892 | AL354976 | 25560761 | 3 |   |   | AL359974 | 25399081 | 1 | 43423 | 6872 | 0 | 50295 |
| S/G/Y/R/B/O |
NT_033892 | AL354976 | 25560761 | 3 |   |   | AL445244 | 25399081 | 1 | 127055 | 0 | 0 | 127055 |
| S/G/Y/R/B/O |
NT_033892 | AL161654 | 25676409 | 3 | chr10 | NT_033892 | AL355587 | 25833640 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033892 | AL161654 | 25676409 | 3 |   |   | AL359974 | 25399081 | 1 | 79943 | 8866 | 0 | 88809 |
| S/G/Y/R/B/O |
NT_033892 | AL161654 | 25676409 | 3 |   |   | AL591477 | 25399081 | 1 | 22335 | 0 | 34749 | 57084 |
| S/G/Y/R/B/O |
NT_033892 | AL355587 | 25833640 | 3 | chr10 | NT_033892 | AC018509 | 25961679 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033892 | AL355587 | 25833640 | 3 |   |   | AL591023 | 25399081 | 1 | 46054 | 0 | 0 | 46054 |
| S/G/Y/R/B/O |
NT_033892 | AC018509 | 25961679 | 3 | chr10 | NT_033892 | AL591114 | 26122554 | 1 | 79583 | 2091 | 18370 | 100044 |
| S/G/Y/R/B/O |
NT_033892 | AC018509 | 25961679 | 3 | chr10 | NT_033226 | AC012045 | 26216012 | 1 | 37120 | 0 | 0 | 37120 |
| S/G/Y/R/B/O |
NT_033892 | AC018509 | 25961679 | 3 |   |   | AL591023 | 26216012 | 1 | 77817 | 0 | 13517 | 91334 |
| S/G/Y/R/B/O |
NT_033892 | AL591114 | 26122554 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033892 | AL591114 | 26122554 | 1 | chr10 | NT_033226 | AC012045 | 26216012 | 1 | 47870 | 0 | 16509 | 64379 |
| S/G/Y/R/B/O |
NT_033892 | AL591114 | 26122554 | 1 | chr10 | NT_033226 | AL591683 | 26310938 | 1 | 13729 | 6758 | 0 | 20487 |
| S/G/Y/R/B/O |
NT_033892 | AL591114 | 26122554 | 1 |   |   | AL591023 | 25961679 | 1 | 29326 | 2727 | 0 | 32053 |
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