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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_024086 | AC021362 | 134487009 | 1 | chr10 | NT_024086 | AL713984 | 134489039 | 1 | 115798 | 1930 | 5672 | 123400 |
| S/G/Y/R/B/O |
NT_024086 | AC021362 | 134487009 | 1 | chr10 | NT_024086 | AC068556 | 134620231 | 3 | 62090 | 0 | 0 | 62090 |
| S/G/Y/R/B/O |
NT_024086 | AC021362 | 134487009 | 1 |   |   | AC068060 | 134786258 | 3 | 62095 | 0 | 0 | 62095 |
| S/G/Y/R/B/O |
NT_024086 | AL713984 | 134489039 | 1 | chr10 | NT_024086 | AC068556 | 134620231 | 3 | 33396 | 2253 | 0 | 35649 |
| S/G/Y/R/B/O |
NT_024086 | AL713984 | 134489039 | 1 |   |   | AC068060 | 134487009 | 3 | 33392 | 2252 | 0 | 35644 |
| S/G/Y/R/B/O |
NT_024086 | AC068556 | 134620231 | 3 | chr10 | NT_024086 | AC011585 | 134786258 | 1 | 84437 | 0 | 2246 | 86683 |
| S/G/Y/R/B/O |
NT_024086 | AC068556 | 134620231 | 3 | chr10 | NT_024086 | AC021362 | 134487009 | 1 | 62090 | 0 | 0 | 62090 |
| S/G/Y/R/B/O |
NT_024086 | AC068556 | 134620231 | 3 |   |   | AC068060 | 134487009 | 3 | 182906 | 0 | 0 | 182906 |
| S/G/Y/R/B/O |
NT_024086 | AC011585 | 134786258 | 1 | chr10 | NT_024086 | AL158835 | 134799229 | 3 | 40316 | 0 | 0 | 40316 |
| S/G/Y/R/B/O |
NT_024086 | AC011585 | 134786258 | 1 |   |   | AC068060 | 134487009 | 3 | 111843 | 0 | 12227 | 124070 |
| S/G/Y/R/B/O |
NT_024086 | AL158835 | 134799229 | 3 | chr10 | NT_024086 | AL360176 | 134973759 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_024086 | AL158835 | 134799229 | 3 |   |   | AC023065 | 134786258 | 1 | 127195 | 0 | 5750 | 132945 |
| S/G/Y/R/B/O |
NT_024086 | AL360176 | 134973759 | 3 | chr10 | NT_024086 | AC063963 | 135127458 | 1 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_024086 | AL360176 | 134973759 | 3 |   |   | AC023065 | 134973759 | 1 | 12712 | 3913 | 0 | 16625 |
| S/G/Y/R/B/O |
NT_024086 | AC063963 | 135127458 | 1 | chr10 | NT_024086 | AC021399 | 135257846 | 1 | 62400 | 0 | 1276 | 63676 |
| S/G/Y/R/B/O |
NT_024086 | AC021399 | 135257846 | 1 | chr10 | NT_024086 | AC022015 | 135305784 | 1 | 110365 | 2400 | 0 | 112765 |
| S/G/Y/R/B/O |
NT_024086 | AC021399 | 135257846 | 1 | chr10 | NT_024086 | AC023169 | 135418151 | 1 | 48067 | 0 | 0 | 48067 |
| S/G/Y/R/B/O |
NT_024086 | AC021399 | 135257846 | 1 | chr10 | NT_024086 | AL691463 | 135327523 | 1 | 63178 | 0 | 0 | 63178 |
| S/G/Y/R/B/O |
NT_024086 | AC022015 | 135305784 | 1 | chr10 | NT_024086 | AL691463 | 135327523 | 1 | 82249 | 0 | 3379 | 85628 |
| S/G/Y/R/B/O |
NT_024086 | AC022015 | 135305784 | 1 | chr10 | NT_024086 | AC023169 | 135418151 | 1 | 51099 | 0 | 0 | 51099 |
| S/G/Y/R/B/O |
NT_024086 | AL691463 | 135327523 | 1 | chr10 | NT_024086 | AC026226 | 135350146 | 1 | 78797 | 0 | 0 | 78797 |
| S/G/Y/R/B/O |
NT_024086 | AL691463 | 135327523 | 1 | chr10 | NT_024086 | AC021399 | 135257846 | 1 | 63178 | 0 | 0 | 63178 |
| S/G/Y/R/B/O |
NT_024086 | AL691463 | 135327523 | 1 | chr10 | NT_024086 | AC023169 | 135418151 | 1 | 83930 | 0 | 0 | 83930 |
| S/G/Y/R/B/O |
NT_024086 | AC026226 | 135350146 | 1 | chr10 | NT_024086 | AC023169 | 135418151 | 1 | 82012 | 0 | 0 | 82012 |
| S/G/Y/R/B/O |
NT_024086 | AC026226 | 135350146 | 1 |   |   | AL672305 | 135127458 | 2 | 72249 | 0 | 0 | 72249 |
| S/G/Y/R/B/O |
NT_024086 | AC023169 | 135418151 | 1 | chr10 | NT_024086 | AL589787 | 135566190 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024086 | AC023169 | 135418151 | 1 | chr10 | NT_024086 | AC021399 | 135257846 | 1 | 48067 | 0 | 0 | 48067 |
| S/G/Y/R/B/O |
NT_024086 | AC023169 | 135418151 | 1 | chr10 | NT_024086 | AC022015 | 135305784 | 1 | 51099 | 0 | 0 | 51099 |
| S/G/Y/R/B/O |
NT_024086 | AC023169 | 135418151 | 1 | chr10 | NT_024086 | AL691463 | 135327523 | 1 | 83930 | 0 | 0 | 83930 |
| S/G/Y/R/B/O |
NT_024086 | AL589787 | 135566190 | 3 | chr10 | NT_024086 | AL583860 | 135712477 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_024086 | AL589787 | 135566190 | 3 |   |   | AL672305 | 135712477 | 2 | 146271 | 0 | 0 | 146271 |
| S/G/Y/R/B/O |
NT_024086 | AL583860 | 135712477 | 3 | chr10 | NT_024086 | AL392108 | 135798322 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_024086 | AL392108 | 135798322 | 3 | chr10 | NT_024086 | AL512272 | 135941501 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024086 | AL392108 | 135798322 | 3 |   |   | AC013378 | 135566190 | 1 | 32037 | 4471 | 1496 | 38004 |
| S/G/Y/R/B/O |
NT_024086 | AL512272 | 135941501 | 3 | chr10 | NT_024086 | AL607029 | 136069052 | 1 | 127650 | 0 | 0 | 127650 |
| S/G/Y/R/B/O |
NT_024086 | AL512272 | 135941501 | 3 |   |   | AC013378 | 136069052 | 1 | 52933 | 23439 | 17231 | 93603 |
| S/G/Y/R/B/O |
NT_024086 | AL607029 | 136069052 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_024086 | AL607029 | 136069052 | 1 |   |   | AC013378 | 136069052 | 1 | 71125 | 27266 | 20385 | 118776 |
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