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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033987 | AC084311 | 43466447 | 1 | chr10 | NT_033987 | AL591130 | 43474594 | 1 | 38893 | 892 | 1481 | 41266 |
| S/G/Y/R/B/O |
NT_033987 | AC084311 | 43466447 | 1 | chr10 | NT_033987 | AL031601 | 43547700 | 3 | 79682 | 0 | 51769 | 131451 |
| S/G/Y/R/B/O |
NT_033987 | AL591130 | 43474594 | 1 | chr10 | NT_033987 | AL031601 | 43547700 | 3 | 152242 | 7387 | 5349 | 164978 |
| S/G/Y/R/B/O |
NT_033987 | AL591130 | 43474594 | 1 |   |   | AL391479 | 94895233 | 1 | 35736 | 0 | 0 | 35736 |
| S/G/Y/R/B/O |
NT_033987 | AL031601 | 43547700 | 3 | chr10 | NT_033987 | AL391099 | 43933413 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033987 | AL031601 | 43547700 | 3 | chr10 | NT_033987 | AC084311 | 43466447 | 1 | 79682 | 0 | 51769 | 131451 |
| S/G/Y/R/B/O |
NT_033987 | AL031601 | 43547700 | 3 |   |   | AL354975 | 43466447 | 1 | 33736 | 0 | 0 | 33736 |
| S/G/Y/R/B/O |
NT_033987 | AL031601 | 43547700 | 3 |   |   | AL391479 | 43466447 | 1 | 76258 | 0 | 0 | 76258 |
| S/G/Y/R/B/O |
NT_033987 | AL391099 | 43933413 | 3 | chr10 | NT_033987 | AL022345 | 43935307 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033987 | AL022345 | 43935307 | 3 | chr10 | NT_033987 | AL645813 | 44079635 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033987 | AL022345 | 43935307 | 3 |   |   | AL023808 | 43474594 | 1 | 112477 | 2450 | 0 | 114927 |
| S/G/Y/R/B/O |
NT_033987 | AL022345 | 43935307 | 3 |   |   | AL354975 | 43474594 | 1 | 90350 | 2310 | 44156 | 136816 |
| S/G/Y/R/B/O |
NT_033987 | AL022345 | 43935307 | 3 |   |   | AL355583 | 43474594 | 1 | 44691 | 0 | 0 | 44691 |
| S/G/Y/R/B/O |
NT_033987 | AL022345 | 43935307 | 3 |   |   | AL391479 | 43474594 | 1 | 88867 | 2108 | 0 | 90975 |
| S/G/Y/R/B/O |
NT_033987 | AL022345 | 43935307 | 3 |   |   | AL590986 | 43474594 | 1 | 58444 | 1950 | 67741 | 128135 |
| S/G/Y/R/B/O |
NT_033987 | AL645813 | 44079635 | 3 | chr10 | NT_033987 | AL365199 | 44379529 | 3 | 103987 | 0 | 0 | 103987 |
| S/G/Y/R/B/O |
NT_033987 | AL645813 | 44079635 | 3 |   |   | AL023808 | 43474594 | 1 | 223828 | 0 | 0 | 223828 |
| S/G/Y/R/B/O |
NT_033987 | AL645813 | 44079635 | 3 |   |   | AL355583 | 43474594 | 1 | 78872 | 0 | 0 | 78872 |
| S/G/Y/R/B/O |
NT_033987 | AL645813 | 44079635 | 3 |   |   | AL590986 | 44379529 | 1 | 85921 | 0 | 0 | 85921 |
| S/G/Y/R/B/O |
NT_033987 | AL645813 | 44079635 | 3 |   |   | AL591132 | 44379529 | 1 | 125191 | 0 | 3337 | 128528 |
| S/G/Y/R/B/O |
NT_033987 | AL645813 | 44079635 | 3 |   |   | AL591169 | 44379529 | 1 | 29311 | 0 | 0 | 29311 |
| S/G/Y/R/B/O |
NT_033987 | AL645813 | 44079635 | 3 |   |   | AL591181 | 44379529 | 1 | 179987 | 2916 | 10412 | 193315 |
| S/G/Y/R/B/O |
NT_033987 | AL365199 | 44379529 | 3 | chr10 | NT_033987 | AC010864 | 44433604 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033987 | AL365199 | 44379529 | 3 |   |   | AL023808 | 44379529 | 1 | 34942 | 0 | 0 | 34942 |
| S/G/Y/R/B/O |
NT_033987 | AL365199 | 44379529 | 3 |   |   | AL360082 | 44379529 | 1 | 97427 | 0 | 0 | 97427 |
| S/G/Y/R/B/O |
NT_033987 | AL365199 | 44379529 | 3 |   |   | AL591169 | 44379529 | 1 | 80312 | 0 | 0 | 80312 |
| S/G/Y/R/B/O |
NT_033987 | AL365199 | 44379529 | 3 |   |   | AL591181 | 44379529 | 1 | 62066 | 0 | 0 | 62066 |
| S/G/Y/R/B/O |
NT_033987 | AL365199 | 44379529 | 3 |   |   | AL645814 | 44079635 | 3 | 54073 | 0 | 0 | 54073 |
| S/G/Y/R/B/O |
NT_033987 | AC010864 | 44433604 | 3 | chr10 | NT_033987 | AL591116 | 44568611 | 1 | 106848 | 0 | 3331 | 110179 |
| S/G/Y/R/B/O |
NT_033987 | AC010864 | 44433604 | 3 | chr10 | NT_033987 | AC068707 | 44623009 | 1 | 15769 | 0 | 0 | 15769 |
| S/G/Y/R/B/O |
NT_033987 | AC010864 | 44433604 | 3 | chr10 | NT_033987 | AL590872 | 44600364 | 1 | 53818 | 0 | 0 | 53818 |
| S/G/Y/R/B/O |
NT_033987 | AC010864 | 44433604 | 3 |   |   | AJ243297 | 44623009 | 3 | 30343 | 0 | 0 | 30343 |
| S/G/Y/R/B/O |
NT_033987 | AC010864 | 44433604 | 3 |   |   | AL591169 | 44568611 | 1 | 88903 | 0 | 0 | 88903 |
| S/G/Y/R/B/O |
NT_033987 | AC010864 | 44433604 | 3 |   |   | AL645814 | 44568611 | 3 | 141317 | 0 | 0 | 141317 |
| S/G/Y/R/B/O |
NT_033987 | AL591116 | 44568611 | 1 | chr10 | NT_033987 | AL590872 | 44600364 | 1 | 79151 | 4771 | 25043 | 108965 |
| S/G/Y/R/B/O |
NT_033987 | AL591116 | 44568611 | 1 | chr10 | NT_033987 | AC068707 | 44623009 | 1 | 63126 | 2875 | 13632 | 79633 |
| S/G/Y/R/B/O |
NT_033987 | AL591116 | 44568611 | 1 |   |   | AJ243297 | 44623009 | 3 | 12588 | 0 | 0 | 12588 |
| S/G/Y/R/B/O |
NT_033987 | AL591116 | 44568611 | 1 |   |   | AL645814 | 44600364 | 3 | 43041 | 0 | 0 | 43041 |
| S/G/Y/R/B/O |
NT_033987 | AL590872 | 44600364 | 1 | chr10 | NT_033987 | AC068707 | 44623009 | 1 | 58962 | 9776 | 22682 | 91420 |
| S/G/Y/R/B/O |
NT_033987 | AL590872 | 44600364 | 1 | chr10 | NT_033987 | AC010864 | 44433604 | 3 | 53818 | 0 | 0 | 53818 |
| S/G/Y/R/B/O |
NT_033987 | AC068707 | 44623009 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033987 | AC068707 | 44623009 | 1 | chr10 | NT_033987 | AC010864 | 44433604 | 3 | 15769 | 0 | 0 | 15769 |
| S/G/Y/R/B/O |
NT_033987 | AC068707 | 44623009 | 1 | chr10 | NT_033987 | AL591116 | 44568611 | 1 | 63126 | 2875 | 13632 | 79633 |
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