Chromosome 10 - Clone Overlaps

Chromosome 10 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_024115	NT_024081	NT_033983	NT_033894	NT_033916	NT_008705	NT_033921	NT_033986
NT_033892	NT_033226	NT_033223	NT_033227	NT_033912	NT_033982	NT_033988	NT_033896
NT_024133	NT_033987	NT_033985	NT_031847	NT_030066	NT_030772	NT_033228	NT_008646
NT_017696	NT_031860	NT_033898	NT_033920	NT_008748	NT_033222	NT_033990	NT_024085
NT_033984	NT_008797	NT_033897	NT_008583	NT_033220	NT_033891	NT_033895	NT_033917
NT_033989	NT_033918	NT_033919	NT_033893	NT_024037	NT_030075	NT_033890	NT_024064
NT_030070	NT_008769	NT_033229	NT_030059	NT_008818	NT_033221	NT_031855	NT_031856
NT_008902	NT_030764	NT_027097	NT_024086	NT_025835	NT_033224	NT_033225	NT_024040
NT_017795	NT_028298

NT_008705

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_008705	AL512783	12852282	3	chr10	NT_008705	AL353586	12954026	3	0	1998	0	1998
S/G/Y/R/B/O	NT_008705	AL512783	12852282	3			AC008647	12852282	2	28418	0	0	28418
S/G/Y/R/B/O	NT_008705	AL353586	12954026	3	chr10	NT_008705	AL596124	13049634	3	0	0	0	0
S/G/Y/R/B/O	NT_008705	AL353586	12954026	3			AC013446	12954026	1	30466	2733	0	33199
S/G/Y/R/B/O	NT_008705	AL353586	12954026	3			AC053464	12954026	1	51725	0	2878	54603
S/G/Y/R/B/O	NT_008705	AL596124	13049634	3	chr10	NT_008705	AL355355	13077639	3	0	0	0	0
S/G/Y/R/B/O	NT_008705	AL596124	13049634	3			AC013446	12852282	1	10817	0	1416	12233
S/G/Y/R/B/O	NT_008705	AL596124	13049634	3			AC053464	12852282	1	30003	0	0	30003
S/G/Y/R/B/O	NT_008705	AL355355	13077639	3	chr10	NT_008705	AL138764	13271842	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008705	AL355355	13077639	3			AC013446	12852282	1	106478	2546	31219	140243
S/G/Y/R/B/O	NT_008705	AL355355	13077639	3			AC053464	12852282	1	29254	1930	4875	36059
S/G/Y/R/B/O	NT_008705	AL138764	13271842	3	chr10	NT_008705	AL355870	13424614	3	0	1998	0	1998
S/G/Y/R/B/O	NT_008705	AL355870	13424614	3	chr10	NT_008705	AL359172	13523176	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008705	AL359172	13523176	3	chr10	NT_008705	AL590677	13549095	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008705	AL590677	13549095	3	chr10	NT_008705	AL157392	13674809	3	0	1992	0	1992
S/G/Y/R/B/O	NT_008705	AL157392	13674809	3	chr10	NT_008705	AL512660	13851712	3	0	0	100	100
S/G/Y/R/B/O	NT_008705	AL512660	13851712	3	chr10	NT_008705	AL365495	13858562	2	0	0	100	100
S/G/Y/R/B/O	NT_008705	AL365495	13858562	2	chr10	NT_008705	AC044781	14043511	1	29274	0	0	29274
S/G/Y/R/B/O	NT_008705	AL365495	13858562	2	chr10	NT_008705	AC021349	14173440	1	48610	5516	5605	59731
S/G/Y/R/B/O	NT_008705	AL365495	13858562	2			AC074244	14043511	1	100739	2468	79035	182242
S/G/Y/R/B/O	NT_008705	AC044781	14043511	1	chr10	NT_008705	AC021690	14168409	1	126017	2656	0	128673
S/G/Y/R/B/O	NT_008705	AC044781	14043511	1	chr10	NT_008705	AC021349	14173440	1	140271	0	11627	151898
S/G/Y/R/B/O	NT_008705	AC044781	14043511	1			AC074244	14168409	1	12479	0	18239	30718
S/G/Y/R/B/O	NT_008705	AC021690	14168409	1	chr10	NT_008705	AC021349	14173440	1	42962	2736	0	45698
S/G/Y/R/B/O	NT_008705	AC021690	14168409	1	chr10	NT_008705	AL157896	14188552	3	19427	2688	0	22115
S/G/Y/R/B/O	NT_008705	AC021349	14173440	1	chr10	NT_008705	AL607075	14176166	3	0	0	0	0
S/G/Y/R/B/O	NT_008705	AC021349	14173440	1	chr10	NT_008705	AC044781	14043511	1	140271	0	11627	151898
S/G/Y/R/B/O	NT_008705	AC021349	14173440	1	chr10	NT_008705	AL365495	13858562	2	48610	5516	5605	59731
S/G/Y/R/B/O	NT_008705	AC021349	14173440	1			AC074244	14043511	1	21619	5515	5605	32739
S/G/Y/R/B/O	NT_008705	AL607075	14176166	3	chr10	NT_008705	AL157896	14188552	3	0	0	0	0
S/G/Y/R/B/O	NT_008705	AL157896	14188552	3	chr10	NT_008705	AC069025	14252216	3	0	1994	0	1994
S/G/Y/R/B/O	NT_008705	AL157896	14188552	3	chr10	NT_008705	AC021690	14168409	1	19427	2688	0	22115
S/G/Y/R/B/O	NT_008705	AC069025	14252216	3	chr10	NT_008705	AL139405	14461803	3	13942	0	0	13942
S/G/Y/R/B/O	NT_008705	AC069025	14252216	3			AL161933	14188552	1	117462	0	0	117462
S/G/Y/R/B/O	NT_008705	AL139405	14461803	3	chr10	NT_008705	AL157706	14627687	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008705	AL139405	14461803	3			AL161933	14627687	1	108599	0	0	108599
S/G/Y/R/B/O	NT_008705	AL157706	14627687	3	chr10	NT_008705	AL158168	14744303	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008705	AL158168	14744303	3	chr10	NT_008705	AC069544	14899543	3	104126	0	0	104126
S/G/Y/R/B/O	NT_008705	AL158168	14744303	3			AC021271	14744303	1	114850	2969	7078	124897
S/G/Y/R/B/O	NT_008705	AC069544	14899543	3	chr10	NT_008705	AL360083	15010039	3	0	0	0	0
S/G/Y/R/B/O	NT_008705	AC069544	14899543	3			AC021271	14627687	1	108510	2030	4235	114775
S/G/Y/R/B/O	NT_008705	AL360083	15010039	3	chr10	NT_008705	AL157391	15102998	3	0	0	0	0
S/G/Y/R/B/O	NT_008705	AL157391	15102998	3	chr10	NT_008705	AL590365	15148175	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008705	AL590365	15148175	3	chr10	NT_008705	AL607028	15340977	3	2002	0	0	2002
S/G/Y/R/B/O	NT_008705	AL607028	15340977	3	chr10	NT_008705	AL139338	15457131	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008705	AL139338	15457131	3	chr10	NT_008705	AL590636	15567392	3	0	0	0	0
S/G/Y/R/B/O	NT_008705	AL139338	15457131	3			AC068059	15148175	1	56732	0	0	56732
S/G/Y/R/B/O	NT_008705	AL590636	15567392	3	chr10	NT_008705	AL359645	15707182	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008705	AL590636	15567392	3			AC018794	15340977	1	119570	0	1202	120772
S/G/Y/R/B/O	NT_008705	AL359645	15707182	3	chr10	NT_008705	AL590439	15854378	3	0	0	0	0
S/G/Y/R/B/O	NT_008705	AL359645	15707182	3			AC018794	15707182	1	47677	0	0	47677
S/G/Y/R/B/O	NT_008705	AL590439	15854378	3	chr10	NT_008705	AL358033	16046326	3	0	0	100	100
S/G/Y/R/B/O	NT_008705	AL358033	16046326	3	chr10	NT_008705	AL359816	16123100	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008705	AL359816	16123100	3	chr10	NT_008705	AL358978	16223201	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008705	AL358978	16223201	3	chr10	NT_008705	AL355339	16305425	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008705	AL355339	16305425	3	chr10	NT_008705	AL360230	16466990	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008705	AL355339	16305425	3			AC024339	16123100	3	26899	0	0	26899
S/G/Y/R/B/O	NT_008705	AL360230	16466990	3	chr10	NT_008705	AL353576	16627589	3	0	0	0	0
S/G/Y/R/B/O	NT_008705	AL360230	16466990	3			AC024339	16466990	3	162598	0	0	162598
S/G/Y/R/B/O	NT_008705	AL353576	16627589	3	chr10	NT_008705	AC073367	16677654	3	0	0	0	0
S/G/Y/R/B/O	NT_008705	AL353576	16627589	3			AC021030	16305425	1	27336	0	0	27336
S/G/Y/R/B/O	NT_008705	AL353576	16627589	3			AC021031	16305425	1	42201	0	0	42201
S/G/Y/R/B/O	NT_008705	AL353576	16627589	3			AC021033	16305425	1	20789	2715	10158	33662
S/G/Y/R/B/O	NT_008705	AL353576	16627589	3			AC021041	16305425	1	27279	0	1154	28433
S/G/Y/R/B/O	NT_008705	AC073367	16677654	3	chr10	NT_008705	AL365215	16844568	3	4652	0	0	4652
S/G/Y/R/B/O	NT_008705	AC073367	16677654	3			AC019248	16305425	1	13712	0	0	13712
S/G/Y/R/B/O	NT_008705	AC073367	16677654	3			AC021030	16305425	1	141703	0	0	141703
S/G/Y/R/B/O	NT_008705	AC073367	16677654	3			AC021031	16305425	1	32137	0	4705	36842
S/G/Y/R/B/O	NT_008705	AC073367	16677654	3			AC021033	16305425	1	45902	0	42868	88770
S/G/Y/R/B/O	NT_008705	AC073367	16677654	3			AC021041	16305425	1	141687	0	0	141687
S/G/Y/R/B/O	NT_008705	AC073367	16677654	3			AC068893	16305425	1	90252	2670	20477	113399
S/G/Y/R/B/O	NT_008705	AL365215	16844568	3	chr10	NT_008705	AL596445	17024619	3	0	0	0	0
S/G/Y/R/B/O	NT_008705	AL365215	16844568	3	chr10	NT_008705	AC053510	17035341	1	79462	0	0	79462
S/G/Y/R/B/O	NT_008705	AL365215	16844568	3			AC019248	16844568	1	101468	2944	0	104412
S/G/Y/R/B/O	NT_008705	AL596445	17024619	3	chr10	NT_008705	AC053510	17035341	1	12720	0	0	12720
S/G/Y/R/B/O	NT_008705	AC053510	17035341	1	chr10	NT_008705	AC024605	17067266	1	100183	0	7614	107797
S/G/Y/R/B/O	NT_008705	AC053510	17035341	1	chr10	NT_008705	AL365215	16844568	3	79462	0	0	79462
S/G/Y/R/B/O	NT_008705	AC053510	17035341	1			AC019248	17035341	1	24628	0	0	24628
S/G/Y/R/B/O	NT_008705	AC024605	17067266	1	chr10	NT_008705	AC067747	17134524	3	85713	0	0	85713
S/G/Y/R/B/O	NT_008705	AC024605	17067266	1	chr10	NT_008705	AL133415	17281802	3	15075	0	0	15075
S/G/Y/R/B/O	NT_008705	AC067747	17134524	3	chr10	NT_008705	AL133415	17281802	3	87745	0	0	87745
S/G/Y/R/B/O	NT_008705	AL133415	17281802	3	chr10	NT_008705	AL158164	17373966	3	0	1999	0	1999
S/G/Y/R/B/O	NT_008705	AL133415	17281802	3	chr10	NT_008705	AC024605	17067266	1	15075	0	0	15075
S/G/Y/R/B/O	NT_008705	AL133415	17281802	3			AC016235	17281802	1	50433	1850	2173	54456
S/G/Y/R/B/O	NT_008705	AL158164	17373966	3	chr10	NT_008705	AL160289	17523255	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008705	AL158164	17373966	3			AC016235	17373966	1	117795	4460	2616	124871
S/G/Y/R/B/O	NT_008705	AL160289	17523255	3	chr10	NT_008705	AL391334	17584173	3	0	1999	0	1999
S/G/Y/R/B/O	NT_008705	AL391334	17584173	3	chr10	NT_008705	AC069542	17679604	3	0	0	0	0
S/G/Y/R/B/O	NT_008705	AC069542	17679604	3	chr10	NT_008705	AL139238	17844117	2	59616	0	0	59616
S/G/Y/R/B/O	NT_008705	AC069542	17679604	3			AC011640	17523255	1	59694	2119	0	61813
S/G/Y/R/B/O	NT_008705	AC069542	17679604	3			AC068897	17523255	1	58684	21298	38635	118617
S/G/Y/R/B/O	NT_008705	AL139238	17844117	2	chr10	NT_008705	AC069023	17948142	1	86147	0	0	86147
S/G/Y/R/B/O	NT_008705	AL139238	17844117	2			AC011640	17844117	1	116951	0	0	116951
S/G/Y/R/B/O	NT_008705	AL139238	17844117	2			AC068897	17844117	1	36176	2163	6552	44891
S/G/Y/R/B/O	NT_008705	AC069023	17948142	1	chr10	NT_008705	AC011982	17948149	1	102672	0	0	102672
S/G/Y/R/B/O	NT_008705	AC069023	17948142	1	chr10	NT_008705	AC015944	17971644	1	67863	1483	0	69346
S/G/Y/R/B/O	NT_008705	AC069023	17948142	1			AC011640	17679604	1	44740	0	0	44740
S/G/Y/R/B/O	NT_008705	AC069023	17948142	1			AL157885	17844117	1	120626	0	3269	123895
S/G/Y/R/B/O	NT_008705	AC011982	17948149	1	chr10	NT_008705	AC015944	17971644	1	91379	2467	1164	95010
S/G/Y/R/B/O	NT_008705	AC011982	17948149	1			AL157885	17948142	1	167057	2601	0	169658
S/G/Y/R/B/O	NT_008705	AC015944	17971644	1	chr10	NT_008705	AL590111	18070385	3	11444	0	0	11444
S/G/Y/R/B/O	NT_008705	AC015944	17971644	1	chr10	NT_008705	AC069023	17948142	1	67863	1483	0	69346
S/G/Y/R/B/O	NT_008705	AC015944	17971644	1			AL157885	17948142	1	120470	2467	1164	124101
S/G/Y/R/B/O	NT_008705	AL590111	18070385	3	chr10	NT_008705	AL360231	18111454	3	0	0	0	0
S/G/Y/R/B/O	NT_008705	AL590111	18070385	3			AL157885	17971644	1	40976	1990	0	42966
S/G/Y/R/B/O	NT_008705	AL360231	18111454	3	chr10	NT_008705	AL353603	18263700	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008705	AL353603	18263700	3	chr10	NT_008705	AL390783	18292225	2	0	1991	0	1991
S/G/Y/R/B/O	NT_008705	AL390783	18292225	2	chr10	NT_008705	AL139814	18467883	3	0	1999	0	1999
S/G/Y/R/B/O	NT_008705	AL390783	18292225	2			AY027893	18263700	3	11011	0	0	11011
S/G/Y/R/B/O	NT_008705	AL139814	18467883	3	chr10	NT_008705	AL450364	18587667	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008705	AL450364	18587667	3	chr10	NT_008705	AL450384	18623756	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008705	AL450384	18623756	3	chr10	NT_008705	AL512641	18746327	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008705	AL450384	18623756	3			AC073368	18623756	1	40236	14533	15985	70754
S/G/Y/R/B/O	NT_008705	AL450384	18623756	3			AY027898	18746327	3	28957	0	0	28957
S/G/Y/R/B/O	NT_008705	AL512641	18746327	3	chr10	NT_008705	AL589882	18917015	3	0	0	0	0
S/G/Y/R/B/O	NT_008705	AL512641	18746327	3			AC073368	18746327	1	26199	2434	21038	49671
S/G/Y/R/B/O	NT_008705	AL512641	18746327	3			AL161653	18746327	1	61388	0	0	61388
S/G/Y/R/B/O	NT_008705	AL589882	18917015	3	chr10	NT_008705	AL357520	18984281	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008705	AL589882	18917015	3			AL161653	18623756	1	23736	0	12019	35755
S/G/Y/R/B/O	NT_008705	AL357520	18984281	3	chr10	NT_008705	AL450470	19161223	3	0	1999	0	1999
S/G/Y/R/B/O	NT_008705	AL357520	18984281	3			AL161653	18984281	1	17312	0	0	17312
S/G/Y/R/B/O	NT_008705	AL450470	19161223	3	chr10	NT_008705	AL391992	19174399	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008705	AL391992	19174399	3	chr10	NT_008705	AL590378	19270054	3	0	0	0	0
S/G/Y/R/B/O	NT_008705	AL391992	19174399	3			AC015460	19174399	1	92192	0	5555	97747
S/G/Y/R/B/O	NT_008705	AL590378	19270054	3
S/G/Y/R/B/O	NT_008705	AL590378	19270054	3	chr10	NT_033921	AL589943	19468943	1	45682	0	0	45682
S/G/Y/R/B/O	NT_008705	AL590378	19270054	3			AC015460	19468943	1	60003	0	0	60003
S/G/Y/R/B/O	NT_008705	AL590378	19270054	3			AL355364	19468943	1	65406	0	21037	86443