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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033983 | AC053504 | 5516566 | 1 | chr10 | NT_033983 | AL365356 | 5520216 | 3 | 24525 | 0 | 0 | 24525 |
| S/G/Y/R/B/O |
NT_033983 | AC053504 | 5516566 | 1 | chr10 | NT_033983 | AL137186 | 5793372 | 3 | 56888 | 0 | 20005 | 76893 |
| S/G/Y/R/B/O |
NT_033983 | AC053504 | 5516566 | 1 | chr10 | NT_033983 | AL596094 | 5687892 | 3 | 80836 | 2876 | 6232 | 89944 |
| S/G/Y/R/B/O |
NT_033983 | AL365356 | 5520216 | 3 | chr10 | NT_033983 | AL596094 | 5687892 | 3 | 0 | 1993 | 0 | 1993 |
| S/G/Y/R/B/O |
NT_033983 | AL596094 | 5687892 | 3 | chr10 | NT_033983 | AL137186 | 5793372 | 3 | 0 | 1999 | 0 | 1999 |
| S/G/Y/R/B/O |
NT_033983 | AL596094 | 5687892 | 3 | chr10 | NT_033983 | AC053504 | 5516566 | 1 | 80836 | 2876 | 6232 | 89944 |
| S/G/Y/R/B/O |
NT_033983 | AL137186 | 5793372 | 3 | chr10 | NT_033983 | AL157395 | 5982979 | 3 | 0 | 1997 | 0 | 1997 |
| S/G/Y/R/B/O |
NT_033983 | AL137186 | 5793372 | 3 | chr10 | NT_033983 | AC053504 | 5516566 | 1 | 56888 | 0 | 20005 | 76893 |
| S/G/Y/R/B/O |
NT_033983 | AL157395 | 5982979 | 3 | chr10 | NT_033983 | AL359960 | 6155819 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033983 | AL157395 | 5982979 | 3 |   |   | U15177 | 6155819 | 3 | 43447 | 0 | 0 | 43447 |
| S/G/Y/R/B/O |
NT_033983 | AL157395 | 5982979 | 3 |   |   | U57613 | 6155819 | 3 | 10485 | 0 | 0 | 10485 |
| S/G/Y/R/B/O |
NT_033983 | AL359960 | 6155819 | 3 | chr10 | NT_033983 | AL137145 | 6222932 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033983 | AL137145 | 6222932 | 3 | chr10 | NT_033983 | AL158043 | 6410699 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033983 | AL137145 | 6222932 | 3 |   |   | AC010956 | 5982979 | 3 | 31172 | 0 | 0 | 31172 |
| S/G/Y/R/B/O |
NT_033983 | AL137145 | 6222932 | 3 |   |   | AL353893 | 5982979 | 1 | 90998 | 0 | 2965 | 93963 |
| S/G/Y/R/B/O |
NT_033983 | AL158043 | 6410699 | 3 | chr10 | NT_033983 | AL158210 | 6543339 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033983 | AL158043 | 6410699 | 3 |   |   | AC010956 | 6155819 | 3 | 132731 | 0 | 0 | 132731 |
| S/G/Y/R/B/O |
NT_033983 | AL158210 | 6543339 | 3 | chr10 | NT_033983 | AL590637 | 6678065 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033983 | AL158210 | 6543339 | 3 |   |   | AC015686 | 6543339 | 1 | 28938 | 0 | 0 | 28938 |
| S/G/Y/R/B/O |
NT_033983 | AL590637 | 6678065 | 3 | chr10 | NT_033983 | AL392086 | 6716460 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033983 | AL590637 | 6678065 | 3 |   |   | AC015686 | 6410699 | 1 | 34969 | 2136 | 657 | 37762 |
| S/G/Y/R/B/O |
NT_033983 | AL392086 | 6716460 | 3 | chr10 | NT_033983 | AL357147 | 6936585 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_033983 | AL392086 | 6716460 | 3 |   |   | AC015686 | 6410699 | 1 | 77475 | 2623 | 15028 | 95126 |
| S/G/Y/R/B/O |
NT_033983 | AL392086 | 6716460 | 3 |   |   | AL358945 | 6936585 | 1 | 40637 | 0 | 0 | 40637 |
| S/G/Y/R/B/O |
NT_033983 | AL357147 | 6936585 | 3 | chr10 | NT_033983 | AL590095 | 6969343 | 3 | 0 | 1999 | 0 | 1999 |
| S/G/Y/R/B/O |
NT_033983 | AL590095 | 6969343 | 3 | chr10 | NT_033983 | AL138771 | 7144346 | 3 | 0 | 0 | 99 | 99 |
| S/G/Y/R/B/O |
NT_033983 | AL590095 | 6969343 | 3 |   |   | AC073378 | 6969343 | 1 | 107157 | 2569 | 14447 | 124173 |
| S/G/Y/R/B/O |
NT_033983 | AL138771 | 7144346 | 3 | chr10 | NT_033983 | AL158046 | 7173392 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033983 | AL138771 | 7144346 | 3 |   |   | AC073378 | 6936585 | 1 | 17387 | 4276 | 1282 | 22945 |
| S/G/Y/R/B/O |
NT_033983 | AL158046 | 7173392 | 3 | chr10 | NT_033983 | AL139125 | 7292557 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033983 | AL158046 | 7173392 | 3 |   |   | AC073378 | 6969343 | 1 | 23441 | 0 | 1008 | 24449 |
| S/G/Y/R/B/O |
NT_033983 | AL139125 | 7292557 | 3 | chr10 | NT_033983 | AL445070 | 7416894 | 3 | 0 | 1999 | 0 | 1999 |
| S/G/Y/R/B/O |
NT_033983 | AL445070 | 7416894 | 3 | chr10 | NT_033983 | AL355374 | 7462738 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033983 | AL355374 | 7462738 | 3 | chr10 | NT_033983 | AL158044 | 7543450 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033983 | AL158044 | 7543450 | 3 | chr10 | NT_033983 | AL353754 | 7715811 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033983 | AL158044 | 7543450 | 3 |   |   | AL391687 | 7462738 | 1 | 93471 | 0 | 0 | 93471 |
| S/G/Y/R/B/O |
NT_033983 | AL353754 | 7715811 | 3 | chr10 | NT_033983 | AL159172 | 7887569 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033983 | AL353754 | 7715811 | 3 |   |   | AC058800 | 7462738 | 1 | 34315 | 2512 | 0 | 36827 |
| S/G/Y/R/B/O |
NT_033983 | AL353754 | 7715811 | 3 |   |   | AL391687 | 7887569 | 1 | 102287 | 0 | 0 | 102287 |
| S/G/Y/R/B/O |
NT_033983 | AL159172 | 7887569 | 3 | chr10 | NT_033983 | AL390294 | 7929527 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033983 | AL159172 | 7887569 | 3 |   |   | AC058800 | 7887569 | 1 | 36391 | 2774 | 0 | 39165 |
| S/G/Y/R/B/O |
NT_033983 | AL390294 | 7929527 | 3 | chr10 | NT_033983 | AL357712 | 8079086 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_033983 | AL390294 | 7929527 | 3 |   |   | AC037470 | 7715811 | 1 | 68708 | 4499 | 13377 | 86584 |
| S/G/Y/R/B/O |
NT_033983 | AL390294 | 7929527 | 3 |   |   | AC058800 | 7715811 | 1 | 92660 | 0 | 13054 | 105714 |
| S/G/Y/R/B/O |
NT_033983 | AL357712 | 8079086 | 3 | chr10 | NT_033983 | AL390835 | 8189631 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_033983 | AL357712 | 8079086 | 3 |   |   | AC037470 | 8079086 | 1 | 53876 | 16023 | 3134 | 73033 |
| S/G/Y/R/B/O |
NT_033983 | AL390835 | 8189631 | 3 | chr10 | NT_033983 | AL356784 | 8253139 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033983 | AL356784 | 8253139 | 3 | chr10 | NT_033983 | AC025946 | 8266618 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_033983 | AC025946 | 8266618 | 3 | chr10 | NT_033983 | AL139403 | 8461803 | 3 | 0 | 1991 | 0 | 1991 |
| S/G/Y/R/B/O |
NT_033983 | AL139403 | 8461803 | 3 | chr10 | NT_033983 | AL355333 | 8571153 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_033983 | AL355333 | 8571153 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033983 | AL355333 | 8571153 | 3 |   |   | AL157784 | 8461803 | 1 | 49818 | 2754 | 0 | 52572 |
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