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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033985 | AL591702 | 44843053 | 1 | chr10 | NT_033985 | AL512654 | 44861718 | 3 | 22119 | 0 | 0 | 22119 |
| S/G/Y/R/B/O |
NT_033985 | AL591702 | 44843053 | 1 | chr10 | NT_033985 | AL450326 | 44906994 | 3 | 85673 | 6809 | 9296 | 101778 |
| S/G/Y/R/B/O |
NT_033985 | AL512654 | 44861718 | 3 | chr10 | NT_033985 | AL450326 | 44906994 | 3 | 0 | 1996 | 0 | 1996 |
| S/G/Y/R/B/O |
NT_033985 | AL450326 | 44906994 | 3 | chr10 | NT_033985 | AL645634 | 45102781 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033985 | AL450326 | 44906994 | 3 | chr10 | NT_033985 | AL591702 | 44843053 | 1 | 85673 | 6809 | 9296 | 101778 |
| S/G/Y/R/B/O |
NT_033985 | AL645634 | 45102781 | 3 | chr10 | NT_033985 | AL355989 | 45180887 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033985 | AL645634 | 45102781 | 3 |   |   | AL591119 | 45180887 | 2 | 73322 | 0 | 0 | 73322 |
| S/G/Y/R/B/O |
NT_033985 | AL355989 | 45180887 | 3 | chr10 | NT_033985 | AL139237 | 45340338 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033985 | AL355989 | 45180887 | 3 |   |   | AC021540 | 45180887 | 1 | 16224 | 6399 | 0 | 22623 |
| S/G/Y/R/B/O |
NT_033985 | AL355989 | 45180887 | 3 |   |   | AL390714 | 45180887 | 1 | 13782 | 0 | 7115 | 20897 |
| S/G/Y/R/B/O |
NT_033985 | AL355989 | 45180887 | 3 |   |   | AL591119 | 45180887 | 2 | 132894 | 0 | 0 | 132894 |
| S/G/Y/R/B/O |
NT_033985 | AL139237 | 45340338 | 3 | chr10 | NT_033985 | AL512640 | 45459140 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033985 | AL139237 | 45340338 | 3 |   |   | AC021540 | 45102781 | 1 | 100775 | 2506 | 0 | 103281 |
| S/G/Y/R/B/O |
NT_033985 | AL139237 | 45340338 | 3 |   |   | AL390714 | 45102781 | 1 | 107518 | 0 | 9622 | 117140 |
| S/G/Y/R/B/O |
NT_033985 | AL512640 | 45459140 | 3 | chr10 | NT_033985 | AL392045 | 45553462 | 3 | 0 | 1997 | 0 | 1997 |
| S/G/Y/R/B/O |
NT_033985 | AL512640 | 45459140 | 3 |   |   | AC021540 | 45102781 | 1 | 37229 | 0 | 1220 | 38449 |
| S/G/Y/R/B/O |
NT_033985 | AL512640 | 45459140 | 3 |   |   | AL390714 | 45102781 | 1 | 89313 | 0 | 0 | 89313 |
| S/G/Y/R/B/O |
NT_033985 | AL392045 | 45553462 | 3 | chr10 | NT_033985 | AL137026 | 45713395 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033985 | AL392045 | 45553462 | 3 | chr10 | NT_030059 | AL391723 | 106661647 | 1 | 111958 | 0 | 0 | 111958 |
| S/G/Y/R/B/O |
NT_033985 | AL392045 | 45553462 | 3 |   |   | AC022954 | 45553462 | 1 | 128909 | 0 | 0 | 128909 |
| S/G/Y/R/B/O |
NT_033985 | AL392045 | 45553462 | 3 |   |   | AL591124 | 45459140 | 1 | 67000 | 0 | 0 | 67000 |
| S/G/Y/R/B/O |
NT_033985 | AL137026 | 45713395 | 3 | chr10 | NT_033985 | AL355141 | 45895869 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033985 | AL137026 | 45713395 | 3 |   |   | AC012277 | 45459140 | 1 | 106066 | 3412 | 1985 | 111463 |
| S/G/Y/R/B/O |
NT_033985 | AL137026 | 45713395 | 3 |   |   | AL390792 | 45895869 | 1 | 53685 | 0 | 0 | 53685 |
| S/G/Y/R/B/O |
NT_033985 | AL137026 | 45713395 | 3 |   |   | AL591124 | 45895869 | 1 | 78632 | 2092 | 38836 | 119560 |
| S/G/Y/R/B/O |
NT_033985 | AL355141 | 45895869 | 3 | chr10 | NT_033985 | AL356157 | 45924500 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033985 | AL355141 | 45895869 | 3 |   |   | AL390792 | 45713395 | 1 | 30073 | 0 | 0 | 30073 |
| S/G/Y/R/B/O |
NT_033985 | AL356157 | 45924500 | 3 | chr10 | NT_033985 | AL359677 | 46121417 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033985 | AL356157 | 45924500 | 3 |   |   | AC022646 | 45713395 | 1 | 44056 | 0 | 0 | 44056 |
| S/G/Y/R/B/O |
NT_033985 | AL356157 | 45924500 | 3 |   |   | AL390792 | 45713395 | 1 | 125608 | 0 | 0 | 125608 |
| S/G/Y/R/B/O |
NT_033985 | AL359677 | 46121417 | 3 | chr10 | NT_033985 | AL139119 | 46237869 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033985 | AL359677 | 46121417 | 3 |   |   | AC022646 | 45713395 | 1 | 115499 | 0 | 0 | 115499 |
| S/G/Y/R/B/O |
NT_033985 | AL139119 | 46237869 | 3 | chr10 | NT_033985 | AL353801 | 46329193 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033985 | AL139119 | 46237869 | 3 |   |   | AC021395 | 46237869 | 1 | 51045 | 4690 | 0 | 55735 |
| S/G/Y/R/B/O |
NT_033985 | AL353801 | 46329193 | 3 | chr10 | NT_033985 | AL390758 | 46549683 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033985 | AL353801 | 46329193 | 3 |   |   | AC021395 | 46121417 | 1 | 95210 | 5231 | 1346 | 101787 |
| S/G/Y/R/B/O |
NT_033985 | AL390758 | 46549683 | 3 | chr10 | NT_033985 | AL358394 | 46562933 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033985 | AL358394 | 46562933 | 3 | chr10 | NT_033985 | AL512324 | 46677792 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_033985 | AL358394 | 46562933 | 3 |   |   | AL161653 | 46562933 | 1 | 29967 | 15019 | 2377 | 47363 |
| S/G/Y/R/B/O |
NT_033985 | AL512324 | 46677792 | 3 | chr10 | NT_033985 | AC010865 | 46844265 | 1 | 33977 | 0 | 2250 | 36227 |
| S/G/Y/R/B/O |
NT_033985 | AL512324 | 46677792 | 3 | chr10 | NT_033985 | AC011879 | 46898809 | 1 | 63566 | 5044 | 6393 | 75003 |
| S/G/Y/R/B/O |
NT_033985 | AC010865 | 46844265 | 1 | chr10 | NT_033985 | AC011879 | 46898809 | 1 | 55933 | 11618 | 29473 | 97024 |
| S/G/Y/R/B/O |
NT_033985 | AC011879 | 46898809 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033985 | AC011879 | 46898809 | 1 | chr10 | NT_033985 | AL512324 | 46677792 | 3 | 63566 | 5044 | 6393 | 75003 |
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