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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010641 | AC090699 | 74632049 | 1 | chr17 | NT_010641 | AC021196 | 74632440 | 1 | 101800 | 5260 | 54442 | 161502 |
| S/G/Y/R/B/O |
NT_010641 | AC090699 | 74632049 | 1 | chr17 | NT_010641 | AC015801 | 75953141 | 3 | 89939 | 0 | 0 | 89939 |
| S/G/Y/R/B/O |
NT_010641 | AC090699 | 74632049 | 1 | chr17 | NT_010641 | AC068145 | 74648848 | 1 | 67245 | 23352 | 35103 | 125700 |
| S/G/Y/R/B/O |
NT_010641 | AC021196 | 74632440 | 1 | chr17 | NT_010641 | AC068145 | 74648848 | 1 | 31632 | 19860 | 11919 | 63411 |
| S/G/Y/R/B/O |
NT_010641 | AC021196 | 74632440 | 1 | chr17 | NT_010641 | AC015801 | 75953141 | 3 | 58304 | 0 | 14332 | 72636 |
| S/G/Y/R/B/O |
NT_010641 | AC021196 | 74632440 | 1 | chr17 | NT_010641 | AC015802 | 74741815 | 2 | 12659 | 0 | 0 | 12659 |
| S/G/Y/R/B/O |
NT_010641 | AC068145 | 74648848 | 1 | chr17 | NT_010641 | AC015802 | 74741815 | 2 | 7936 | 6523 | 4964 | 19423 |
| S/G/Y/R/B/O |
NT_010641 | AC068145 | 74648848 | 1 | chr17 | NT_010641 | AC015801 | 75953141 | 3 | 30046 | 1943 | 10522 | 42511 |
| S/G/Y/R/B/O |
NT_010641 | AC068145 | 74648848 | 1 | chr17 | NT_010641 | AC090699 | 74632049 | 1 | 67245 | 23352 | 35103 | 125700 |
| S/G/Y/R/B/O |
NT_010641 | AC015802 | 74741815 | 2 | chr17 | NT_010641 | AC105191 | 74845381 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010641 | AC015802 | 74741815 | 2 | chr17 | NT_010641 | AC005837 | 76372083 | 3 | 19128 | 0 | 0 | 19128 |
| S/G/Y/R/B/O |
NT_010641 | AC015802 | 74741815 | 2 | chr17 | NT_010641 | AC021196 | 74632440 | 1 | 12659 | 0 | 0 | 12659 |
| S/G/Y/R/B/O |
NT_010641 | AC015802 | 74741815 | 2 |   |   | AC016385 | 76372083 | 1 | 125247 | 18865 | 26688 | 170800 |
| S/G/Y/R/B/O |
NT_010641 | AC105191 | 74845381 | 2 | chr17 | NT_010641 | AC012333 | 74847601 | 1 | 72734 | 0 | 0 | 72734 |
| S/G/Y/R/B/O |
NT_010641 | AC105191 | 74845381 | 2 | chr17 | NT_010641 | AC021683 | 75013719 | 2 | 33779 | 1736 | 35348 | 70863 |
| S/G/Y/R/B/O |
NT_010641 | AC012333 | 74847601 | 1 | chr17 | NT_010641 | AC097640 | 74932696 | 1 | 142321 | 1983 | 8364 | 152668 |
| S/G/Y/R/B/O |
NT_010641 | AC012333 | 74847601 | 1 | chr17 | NT_010641 | AC015804 | 76575296 | 3 | 48687 | 2753 | 0 | 51440 |
| S/G/Y/R/B/O |
NT_010641 | AC097640 | 74932696 | 1 | chr17 | NT_010641 | AC021683 | 75013719 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010641 | AC097640 | 74932696 | 1 | chr17 | NT_010641 | AC015804 | 76575296 | 3 | 50018 | 0 | 0 | 50018 |
| S/G/Y/R/B/O |
NT_010641 | AC021683 | 75013719 | 2 | chr17 | NT_010641 | AC015803 | 75064253 | 1 | 59518 | 0 | 26248 | 85766 |
| S/G/Y/R/B/O |
NT_010641 | AC021683 | 75013719 | 2 | chr17 | NT_010641 | AC105191 | 74845381 | 2 | 33779 | 1736 | 35348 | 70863 |
| S/G/Y/R/B/O |
NT_010641 | AC015803 | 75064253 | 1 | chr17 | NT_010641 | AC012118 | 75155568 | 1 | 48280 | 0 | 0 | 48280 |
| S/G/Y/R/B/O |
NT_010641 | AC015803 | 75064253 | 1 | chr17 | NT_010641 | AC023287 | 75173199 | 1 | 26047 | 0 | 6709 | 32756 |
| S/G/Y/R/B/O |
NT_010641 | AC015803 | 75064253 | 1 | chr17 | NT_010641 | AC111170 | 75155678 | 2 | 20893 | 0 | 2807 | 23700 |
| S/G/Y/R/B/O |
NT_010641 | AC012118 | 75155568 | 1 | chr17 | NT_010641 | AC111170 | 75155678 | 2 | 74414 | 1027 | 2560 | 78001 |
| S/G/Y/R/B/O |
NT_010641 | AC012118 | 75155568 | 1 | chr17 | NT_010641 | AC023287 | 75173199 | 1 | 135725 | 1645 | 8791 | 146161 |
| S/G/Y/R/B/O |
NT_010641 | AC012118 | 75155568 | 1 | chr17 | NT_010641 | AC034138 | 75284627 | 1 | 40271 | 2108 | 7123 | 49502 |
| S/G/Y/R/B/O |
NT_010641 | AC111170 | 75155678 | 2 | chr17 | NT_010641 | AC023287 | 75173199 | 1 | 70567 | 0 | 29105 | 99672 |
| S/G/Y/R/B/O |
NT_010641 | AC111170 | 75155678 | 2 | chr17 | NT_010641 | AC015803 | 75064253 | 1 | 20893 | 0 | 2807 | 23700 |
| S/G/Y/R/B/O |
NT_010641 | AC023287 | 75173199 | 1 | chr17 | NT_010641 | AC034138 | 75284627 | 1 | 4534 | 2023 | 2642 | 9199 |
| S/G/Y/R/B/O |
NT_010641 | AC023287 | 75173199 | 1 | chr17 | NT_010641 | AC012118 | 75155568 | 1 | 135725 | 1645 | 8791 | 146161 |
| S/G/Y/R/B/O |
NT_010641 | AC023287 | 75173199 | 1 | chr17 | NT_010641 | AC015803 | 75064253 | 1 | 26047 | 0 | 6709 | 32756 |
| S/G/Y/R/B/O |
NT_010641 | AC034138 | 75284627 | 1 | chr17 | NT_010641 | AC015815 | 75284954 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010641 | AC034138 | 75284627 | 1 | chr17 | NT_010641 | AC012118 | 75155568 | 1 | 40271 | 2108 | 7123 | 49502 |
| S/G/Y/R/B/O |
NT_010641 | AC034138 | 75284627 | 1 | chr17 | NT_010641 | AC068169 | 75431857 | 1 | 16879 | 0 | 6176 | 23055 |
| S/G/Y/R/B/O |
NT_010641 | AC034138 | 75284627 | 1 | chr17 | NT_010641 | AC068594 | 75459531 | 1 | 50694 | 4829 | 37564 | 93087 |
| S/G/Y/R/B/O |
NT_010641 | AC015815 | 75284954 | 1 | chr17 | NT_010641 | AC087645 | 75288988 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010641 | AC015815 | 75284954 | 1 | chr17 | NT_010641 | AC016168 | 77048771 | 3 | 32041 | 0 | 0 | 32041 |
| S/G/Y/R/B/O |
NT_010641 | AC015815 | 75284954 | 1 | chr17 | NT_010641 | AC068169 | 75431857 | 1 | 73987 | 2157 | 2111 | 78255 |
| S/G/Y/R/B/O |
NT_010641 | AC087645 | 75288988 | 1 | chr17 | NT_010641 | AC032035 | 75302416 | 1 | 20605 | 0 | 94002 | 114607 |
| S/G/Y/R/B/O |
NT_010641 | AC087645 | 75288988 | 1 | chr17 | NT_010641 | AC021593 | 76775748 | 1 | 45831 | 4972 | 2853 | 53656 |
| S/G/Y/R/B/O |
NT_010641 | AC087645 | 75288988 | 1 |   |   | M15205 | 75319542 | 3 | 12638 | 0 | 0 | 12638 |
| S/G/Y/R/B/O |
NT_010641 | AC087645 | 75288988 | 1 |   |   | U75285 | 75319542 | 3 | 14771 | 0 | 0 | 14771 |
| S/G/Y/R/B/O |
NT_010641 | AC032035 | 75302416 | 1 | chr17 | NT_010641 | AC061992 | 75319542 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010641 | AC061992 | 75319542 | 1 | chr17 | NT_010641 | AC068169 | 75431857 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010641 | AC061992 | 75319542 | 1 | chr17 | NT_010641 | AC016182 | 75670499 | 1 | 85718 | 0 | 0 | 85718 |
| S/G/Y/R/B/O |
NT_010641 | AC068169 | 75431857 | 1 | chr17 | NT_010641 | AC068594 | 75459531 | 1 | 12510 | 0 | 45372 | 57882 |
| S/G/Y/R/B/O |
NT_010641 | AC068169 | 75431857 | 1 | chr17 | NT_010641 | AC015815 | 75284954 | 1 | 73987 | 2157 | 2111 | 78255 |
| S/G/Y/R/B/O |
NT_010641 | AC068169 | 75431857 | 1 | chr17 | NT_010641 | AC034138 | 75284627 | 1 | 16879 | 0 | 6176 | 23055 |
| S/G/Y/R/B/O |
NT_010641 | AC068594 | 75459531 | 1 | chr17 | NT_010641 | AC016182 | 75670499 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010641 | AC068594 | 75459531 | 1 | chr17 | NT_010641 | AC034138 | 75284627 | 1 | 50694 | 4829 | 37564 | 93087 |
| S/G/Y/R/B/O |
NT_010641 | AC016182 | 75670499 | 1 | chr17 | NT_010641 | AC015801 | 75953141 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010641 | AC016182 | 75670499 | 1 | chr17 | NT_010641 | AC061992 | 75319542 | 1 | 85718 | 0 | 0 | 85718 |
| S/G/Y/R/B/O |
NT_010641 | AC015801 | 75953141 | 3 | chr17 | NT_010641 | AC040980 | 76119533 | 1 | 12077 | 0 | 0 | 12077 |
| S/G/Y/R/B/O |
NT_010641 | AC015801 | 75953141 | 3 | chr17 | NT_010641 | AC018665 | 76140904 | 1 | 67519 | 0 | 0 | 67519 |
| S/G/Y/R/B/O |
NT_010641 | AC015801 | 75953141 | 3 | chr17 | NT_010641 | AC021196 | 74632440 | 1 | 58304 | 0 | 14332 | 72636 |
| S/G/Y/R/B/O |
NT_010641 | AC015801 | 75953141 | 3 | chr17 | NT_010641 | AC068145 | 74648848 | 1 | 30046 | 1943 | 10522 | 42511 |
| S/G/Y/R/B/O |
NT_010641 | AC015801 | 75953141 | 3 | chr17 | NT_010641 | AC090699 | 74632049 | 1 | 89939 | 0 | 0 | 89939 |
| S/G/Y/R/B/O |
NT_010641 | AC040980 | 76119533 | 1 | chr17 | NT_010641 | AC018665 | 76140904 | 1 | 57644 | 0 | 17262 | 74906 |
| S/G/Y/R/B/O |
NT_010641 | AC018665 | 76140904 | 1 | chr17 | NT_010641 | AC005837 | 76372083 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010641 | AC018665 | 76140904 | 1 | chr17 | NT_010641 | AC015801 | 75953141 | 3 | 67519 | 0 | 0 | 67519 |
| S/G/Y/R/B/O |
NT_010641 | AC005837 | 76372083 | 3 | chr17 | NT_010641 | AC027694 | 76504577 | 1 | 30587 | 0 | 0 | 30587 |
| S/G/Y/R/B/O |
NT_010641 | AC005837 | 76372083 | 3 | chr17 | NT_010641 | AC015802 | 74741815 | 2 | 19128 | 0 | 0 | 19128 |
| S/G/Y/R/B/O |
NT_010641 | AC005837 | 76372083 | 3 |   |   | AC016385 | 74741815 | 1 | 10614 | 0 | 0 | 10614 |
| S/G/Y/R/B/O |
NT_010641 | AC027694 | 76504577 | 1 | chr17 | NT_010641 | AC015804 | 76575296 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010641 | AC027694 | 76504577 | 1 | chr17 | NT_010641 | AC024720 | 77250524 | 1 | 61577 | 0 | 13816 | 75393 |
| S/G/Y/R/B/O |
NT_010641 | AC027694 | 76504577 | 1 | chr17 | NT_010641 | AC087296 | 77242308 | 1 | 76080 | 1631 | 239 | 77950 |
| S/G/Y/R/B/O |
NT_010641 | AC015804 | 76575296 | 3 | chr17 | NT_010641 | AC021593 | 76775748 | 1 | 10069 | 0 | 0 | 10069 |
| S/G/Y/R/B/O |
NT_010641 | AC015804 | 76575296 | 3 | chr17 | NT_010641 | AC012333 | 74847601 | 1 | 48687 | 2753 | 0 | 51440 |
| S/G/Y/R/B/O |
NT_010641 | AC015804 | 76575296 | 3 | chr17 | NT_010641 | AC097640 | 74932696 | 1 | 50018 | 0 | 0 | 50018 |
| S/G/Y/R/B/O |
NT_010641 | AC021593 | 76775748 | 1 | chr17 | NT_010641 | AC016168 | 77048771 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010641 | AC021593 | 76775748 | 1 | chr17 | NT_010641 | AC087645 | 75288988 | 1 | 45831 | 4972 | 2853 | 53656 |
| S/G/Y/R/B/O |
NT_010641 | AC021593 | 76775748 | 1 |   |   | AL096808 | 75288988 | 3 | 36477 | 0 | 0 | 36477 |
| S/G/Y/R/B/O |
NT_010641 | AC021593 | 76775748 | 1 |   |   | M15205 | 75288988 | 3 | 12543 | 0 | 0 | 12543 |
| S/G/Y/R/B/O |
NT_010641 | AC016168 | 77048771 | 3 | chr17 | NT_010641 | AC087296 | 77242308 | 1 | 23305 | 0 | 64685 | 87990 |
| S/G/Y/R/B/O |
NT_010641 | AC016168 | 77048771 | 3 | chr17 | NT_010641 | AC015815 | 75284954 | 1 | 32041 | 0 | 0 | 32041 |
| S/G/Y/R/B/O |
NT_010641 | AC016168 | 77048771 | 3 | chr17 | NT_010641 | AC024720 | 77250524 | 1 | 87297 | 0 | 0 | 87297 |
| S/G/Y/R/B/O |
NT_010641 | AC087296 | 77242308 | 1 | chr17 | NT_010641 | AC024720 | 77250524 | 1 | 37663 | 0 | 52353 | 90016 |
| S/G/Y/R/B/O |
NT_010641 | AC087296 | 77242308 | 1 | chr17 | NT_010641 | AC027694 | 76504577 | 1 | 76080 | 1631 | 239 | 77950 |
| S/G/Y/R/B/O |
NT_010641 | AC024720 | 77250524 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010641 | AC024720 | 77250524 | 1 | chr17 | NT_010641 | AC016168 | 77048771 | 3 | 87297 | 0 | 0 | 87297 |
| S/G/Y/R/B/O |
NT_010641 | AC024720 | 77250524 | 1 | chr17 | NT_010641 | AC027694 | 76504577 | 1 | 61577 | 0 | 13816 | 75393 |
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