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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010755 | AC022278 | 43111654 | 1 | chr17 | NT_010755 | AC087650 | 43117141 | 1 | 56380 | 0 | 38753 | 95133 |
| S/G/Y/R/B/O |
NT_010755 | AC022278 | 43111654 | 1 | chr17 | NT_010755 | AC109326 | 43207035 | 2 | 14946 | 0 | 12872 | 27818 |
| S/G/Y/R/B/O |
NT_010755 | AC087650 | 43117141 | 1 | chr17 | NT_010755 | AC109326 | 43207035 | 2 | 37562 | 0 | 0 | 37562 |
| S/G/Y/R/B/O |
NT_010755 | AC109326 | 43207035 | 2 | chr17 | NT_010755 | AC024051 | 43274999 | 1 | 25939 | 0 | 25136 | 51075 |
| S/G/Y/R/B/O |
NT_010755 | AC109326 | 43207035 | 2 | chr17 | NT_010755 | AC022278 | 43111654 | 1 | 14946 | 0 | 12872 | 27818 |
| S/G/Y/R/B/O |
NT_010755 | AC109326 | 43207035 | 2 | chr17 | NT_010755 | AC060780 | 43296562 | 1 | 45930 | 0 | 0 | 45930 |
| S/G/Y/R/B/O |
NT_010755 | AC024051 | 43274999 | 1 | chr17 | NT_010755 | AC060780 | 43296562 | 1 | 37723 | 7012 | 2690 | 47425 |
| S/G/Y/R/B/O |
NT_010755 | AC060780 | 43296562 | 1 | chr17 | NT_010755 | L78833 | 43414063 | 3 | 43056 | 0 | 0 | 43056 |
| S/G/Y/R/B/O |
NT_010755 | AC060780 | 43296562 | 1 | chr17 | NT_010755 | AC109326 | 43207035 | 2 | 45930 | 0 | 0 | 45930 |
| S/G/Y/R/B/O |
NT_010755 | L78833 | 43414063 | 3 | chr17 | NT_010755 | AC055866 | 43531096 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010755 | AC055866 | 43531096 | 1 | chr17 | NT_010755 | AC046171 | 43570153 | 1 | 158991 | 3798 | 3437 | 166226 |
| S/G/Y/R/B/O |
NT_010755 | AC055866 | 43531096 | 1 | chr17 | NT_010755 | AC016889 | 43731309 | 1 | 83164 | 0 | 19911 | 103075 |
| S/G/Y/R/B/O |
NT_010755 | AC046171 | 43570153 | 1 | chr17 | NT_010755 | AC105024 | 43570362 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010755 | AC046171 | 43570153 | 1 | chr17 | NT_010755 | AC016889 | 43731309 | 1 | 61866 | 0 | 27852 | 89718 |
| S/G/Y/R/B/O |
NT_010755 | AC105024 | 43570362 | 2 | chr17 | NT_010755 | AC003104 | 43629820 | 3 | 89065 | 0 | 0 | 89065 |
| S/G/Y/R/B/O |
NT_010755 | AC003104 | 43629820 | 3 | chr17 | NT_010755 | AC019085 | 43730455 | 1 | 5344 | 3466 | 0 | 8810 |
| S/G/Y/R/B/O |
NT_010755 | AC019085 | 43730455 | 1 | chr17 | NT_010755 | AC016889 | 43731309 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010755 | AC019085 | 43730455 | 1 | chr17 | NT_010755 | AC069250 | 44188734 | 1 | 35873 | 7366 | 20920 | 64159 |
| S/G/Y/R/B/O |
NT_010755 | AC019085 | 43730455 | 1 | chr17 | NT_010755 | AC087691 | 44188805 | 1 | 50837 | 5644 | 35597 | 92078 |
| S/G/Y/R/B/O |
NT_010755 | AC016889 | 43731309 | 1 | chr17 | NT_010755 | AC027146 | 43961812 | 1 | 0 | 6289 | 1014 | 7303 |
| S/G/Y/R/B/O |
NT_010755 | AC016889 | 43731309 | 1 | chr17 | NT_010755 | AC046171 | 43570153 | 1 | 61866 | 0 | 27852 | 89718 |
| S/G/Y/R/B/O |
NT_010755 | AC016889 | 43731309 | 1 | chr17 | NT_010755 | AC055866 | 43531096 | 1 | 83164 | 0 | 19911 | 103075 |
| S/G/Y/R/B/O |
NT_010755 | AC027146 | 43961812 | 1 | chr17 | NT_010755 | AC067852 | 43965102 | 1 | 41650 | 15829 | 8638 | 66117 |
| S/G/Y/R/B/O |
NT_010755 | AC067852 | 43965102 | 1 | chr17 | NT_010755 | M84472 | 44035972 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010755 | AC067852 | 43965102 | 1 | chr17 | NT_010755 | AC002537 | 44093904 | 1 | 46082 | 0 | 2740 | 48822 |
| S/G/Y/R/B/O |
NT_010755 | AC067852 | 43965102 | 1 |   |   | AF190749 | 43961812 | 3 | 21079 | 0 | 0 | 21079 |
| S/G/Y/R/B/O |
NT_010755 | AC067852 | 43965102 | 1 |   |   | U34879 | 43961812 | 3 | 26444 | 0 | 0 | 26444 |
| S/G/Y/R/B/O |
NT_010755 | AC067852 | 43965102 | 1 |   |   | U43572 | 43961812 | 3 | 10099 | 0 | 0 | 10099 |
| S/G/Y/R/B/O |
NT_010755 | M84472 | 44035972 | 3 | chr17 | NT_010755 | AC002537 | 44093904 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010755 | M84472 | 44035972 | 3 |   |   | U34879 | 43961812 | 3 | 21714 | 0 | 0 | 21714 |
| S/G/Y/R/B/O |
NT_010755 | AC002537 | 44093904 | 1 | chr17 | NT_010755 | AC023121 | 44112904 | 1 | 3453 | 0 | 62588 | 66041 |
| S/G/Y/R/B/O |
NT_010755 | AC002537 | 44093904 | 1 | chr17 | NT_010755 | AC067852 | 43965102 | 1 | 46082 | 0 | 2740 | 48822 |
| S/G/Y/R/B/O |
NT_010755 | AC002537 | 44093904 | 1 |   |   | U34879 | 44144529 | 3 | 22608 | 0 | 0 | 22608 |
| S/G/Y/R/B/O |
NT_010755 | AC002537 | 44093904 | 1 |   |   | U43572 | 44144529 | 3 | 10096 | 0 | 0 | 10096 |
| S/G/Y/R/B/O |
NT_010755 | AC023121 | 44112904 | 1 | chr17 | NT_010755 | AC107993 | 44144529 | 2 | 99900 | 2563 | 32804 | 135267 |
| S/G/Y/R/B/O |
NT_010755 | AC023121 | 44112904 | 1 | chr17 | NT_010755 | AC087691 | 44188805 | 1 | 38943 | 0 | 1605 | 40548 |
| S/G/Y/R/B/O |
NT_010755 | AC107993 | 44144529 | 2 | chr17 | NT_010755 | AC069250 | 44188734 | 1 | 11900 | 0 | 14032 | 25932 |
| S/G/Y/R/B/O |
NT_010755 | AC107993 | 44144529 | 2 | chr17 | NT_010755 | AC087691 | 44188805 | 1 | 31647 | 0 | 1605 | 33252 |
| S/G/Y/R/B/O |
NT_010755 | AC069250 | 44188734 | 1 | chr17 | NT_010755 | AC087691 | 44188805 | 1 | 52222 | 5185 | 38289 | 95696 |
| S/G/Y/R/B/O |
NT_010755 | AC069250 | 44188734 | 1 | chr17 | NT_010755 | AC019085 | 43730455 | 1 | 35873 | 7366 | 20920 | 64159 |
| S/G/Y/R/B/O |
NT_010755 | AC087691 | 44188805 | 1 | chr17 | NT_010755 | AC068675 | 44242096 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010755 | AC087691 | 44188805 | 1 | chr17 | NT_010755 | AC019085 | 43730455 | 1 | 50837 | 5644 | 35597 | 92078 |
| S/G/Y/R/B/O |
NT_010755 | AC087691 | 44188805 | 1 | chr17 | NT_010755 | AC023121 | 44112904 | 1 | 38943 | 0 | 1605 | 40548 |
| S/G/Y/R/B/O |
NT_010755 | AC087691 | 44188805 | 1 | chr17 | NT_010755 | AC107993 | 44144529 | 2 | 31647 | 0 | 1605 | 33252 |
| S/G/Y/R/B/O |
NT_010755 | AC068675 | 44242096 | 1 | chr17 | NT_010755 | AC055852 | 44259709 | 1 | 0 | 0 | 1189 | 1189 |
| S/G/Y/R/B/O |
NT_010755 | AC068675 | 44242096 | 1 | chr17 | NT_010755 | AC004149 | 44671877 | 3 | 48335 | 0 | 0 | 48335 |
| S/G/Y/R/B/O |
NT_010755 | AC068675 | 44242096 | 1 |   |   | AC073954 | 44259709 | 1 | 43868 | 4346 | 8063 | 56277 |
| S/G/Y/R/B/O |
NT_010755 | AC055852 | 44259709 | 1 | chr17 | NT_010755 | AC004149 | 44671877 | 3 | 0 | 0 | 3938 | 3938 |
| S/G/Y/R/B/O |
NT_010755 | AC055852 | 44259709 | 1 | chr7 | NT_007933 | AC004014 | 109878413 | 3 | 83589 | 1593 | 0 | 85182 |
| S/G/Y/R/B/O |
NT_010755 | AC055852 | 44259709 | 1 | chr7 | NT_007933 | AC091766 | 110050454 | 3 | 66052 | 0 | 0 | 66052 |
| S/G/Y/R/B/O |
NT_010755 | AC004149 | 44671877 | 3 | chr17 | NT_010755 | AC055813 | 44756644 | 3 | 2488 | 0 | 0 | 2488 |
| S/G/Y/R/B/O |
NT_010755 | AC004149 | 44671877 | 3 | chr17 | NT_010755 | AC068675 | 44242096 | 1 | 48335 | 0 | 0 | 48335 |
| S/G/Y/R/B/O |
NT_010755 | AC004149 | 44671877 | 3 |   |   | AC073954 | 44242096 | 1 | 56729 | 6701 | 9523 | 72953 |
| S/G/Y/R/B/O |
NT_010755 | AC004149 | 44671877 | 3 |   |   | AF397423 | 44242096 | 3 | 33494 | 0 | 0 | 33494 |
| S/G/Y/R/B/O |
NT_010755 | AC055813 | 44756644 | 3 | chr17 | NT_010755 | AC003098 | 44834272 | 3 | 23137 | 0 | 0 | 23137 |
| S/G/Y/R/B/O |
NT_010755 | AC055813 | 44756644 | 3 |   |   | AC073954 | 44259709 | 1 | 32432 | 2513 | 27944 | 62889 |
| S/G/Y/R/B/O |
NT_010755 | AC055813 | 44756644 | 3 |   |   | AF326736 | 44259709 | 3 | 21462 | 0 | 0 | 21462 |
| S/G/Y/R/B/O |
NT_010755 | AC055813 | 44756644 | 3 |   |   | AF397423 | 44259709 | 3 | 62678 | 0 | 0 | 62678 |
| S/G/Y/R/B/O |
NT_010755 | AC003098 | 44834272 | 3 | chr17 | NT_010755 | AC015937 | 44905847 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010755 | AC003098 | 44834272 | 3 |   |   | AF326736 | 44756644 | 3 | 21224 | 0 | 0 | 21224 |
| S/G/Y/R/B/O |
NT_010755 | AC015937 | 44905847 | 3 | chr17 | NT_010755 | AC007993 | 44923423 | 3 | 2002 | 0 | 0 | 2002 |
| S/G/Y/R/B/O |
NT_010755 | AC007993 | 44923423 | 3 | chr17 | NT_010755 | AC004150 | 45063125 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010755 | AC007993 | 44923423 | 3 | chr17 | NT_010755 | AC023855 | 45181889 | 1 | 42445 | 0 | 12221 | 54666 |
| S/G/Y/R/B/O |
NT_010755 | AC007993 | 44923423 | 3 |   |   | AC078837 | 45181889 | 1 | 34972 | 11544 | 46572 | 93088 |
| S/G/Y/R/B/O |
NT_010755 | AC004150 | 45063125 | 3 | chr17 | NT_010755 | AC023855 | 45181889 | 1 | 76231 | 0 | 42403 | 118634 |
| S/G/Y/R/B/O |
NT_010755 | AC004150 | 45063125 | 3 |   |   | AC078837 | 45181889 | 1 | 20055 | 0 | 23767 | 43822 |
| S/G/Y/R/B/O |
NT_010755 | AC023855 | 45181889 | 1 | chr17 | NT_010755 | AC004596 | 45345496 | 3 | 30894 | 0 | 2125 | 33019 |
| S/G/Y/R/B/O |
NT_010755 | AC023855 | 45181889 | 1 | chr17 | NT_010755 | AC007993 | 44923423 | 3 | 42445 | 0 | 12221 | 54666 |
| S/G/Y/R/B/O |
NT_010755 | AC023855 | 45181889 | 1 |   |   | AC078837 | 44923423 | 1 | 20921 | 6374 | 45234 | 72529 |
| S/G/Y/R/B/O |
NT_010755 | AC004596 | 45345496 | 3 | chr17 | NT_010755 | AC003102 | 45438134 | 3 | 0 | 1706 | 0 | 1706 |
| S/G/Y/R/B/O |
NT_010755 | AC003102 | 45438134 | 3 | chr17 | NT_010755 | AC003043 | 45467408 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010755 | AC003043 | 45467408 | 3 | chr17 | NT_010755 | AC007722 | 45604895 | 3 | 13315 | 0 | 0 | 13315 |
| S/G/Y/R/B/O |
NT_010755 | AC003043 | 45467408 | 3 | chr17 | NT_010755 | AC019151 | 45671094 | 1 | 46678 | 7522 | 28003 | 82203 |
| S/G/Y/R/B/O |
NT_010755 | AC003043 | 45467408 | 3 | chr17 | NT_010755 | AC019152 | 45667375 | 1 | 90983 | 0 | 22478 | 113461 |
| S/G/Y/R/B/O |
NT_010755 | AC003043 | 45467408 | 3 |   |   | X77738 | 45667375 | 3 | 14047 | 0 | 0 | 14047 |
| S/G/Y/R/B/O |
NT_010755 | AC007722 | 45604895 | 3 | chr17 | NT_010755 | AC019152 | 45667375 | 1 | 70190 | 0 | 0 | 70190 |
| S/G/Y/R/B/O |
NT_010755 | AC007722 | 45604895 | 3 | chr17 | NT_010755 | AC019151 | 45671094 | 1 | 40342 | 1498 | 18095 | 59935 |
| S/G/Y/R/B/O |
NT_010755 | AC019152 | 45667375 | 1 | chr17 | NT_010755 | AC019151 | 45671094 | 1 | 78228 | 11288 | 40722 | 130238 |
| S/G/Y/R/B/O |
NT_010755 | AC019152 | 45667375 | 1 | chr17 | NT_010755 | AC003043 | 45467408 | 3 | 90983 | 0 | 22478 | 113461 |
| S/G/Y/R/B/O |
NT_010755 | AC019151 | 45671094 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010755 | AC019151 | 45671094 | 1 | chr17 | NT_010755 | AC003043 | 45467408 | 3 | 46678 | 7522 | 28003 | 82203 |
| S/G/Y/R/B/O |
NT_010755 | AC019151 | 45671094 | 1 | chr17 | NT_010755 | AC007722 | 45604895 | 3 | 40342 | 1498 | 18095 | 59935 |
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