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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_024857 | AC104342 | 8514844 | 2 | chr17 | NT_024857 | AC027551 | 8528802 | 1 | 55345 | 2381 | 3269 | 60995 |
| S/G/Y/R/B/O |
NT_024857 | AC104342 | 8514844 | 2 | chrX | NT_011657 | AC091806 | 36985163 | 3 | 85511 | 0 | 4599 | 90110 |
| S/G/Y/R/B/O |
NT_024857 | AC104342 | 8514844 | 2 | chrX | NT_011657 | AL591802 | 36850173 | 3 | 65629 | 0 | 24990 | 90619 |
| S/G/Y/R/B/O |
NT_024857 | AC104342 | 8514844 | 2 |   |   | AC091809 | 36985163 | 3 | 146423 | 0 | 0 | 146423 |
| S/G/Y/R/B/O |
NT_024857 | AC027551 | 8528802 | 1 | chr17 | NT_024857 | AC069362 | 8538699 | 3 | 74724 | 2432 | 0 | 77156 |
| S/G/Y/R/B/O |
NT_024857 | AC027551 | 8528802 | 1 | chrX | NT_011657 | AC091806 | 36985163 | 3 | 49852 | 2381 | 0 | 52233 |
| S/G/Y/R/B/O |
NT_024857 | AC027551 | 8528802 | 1 | chrX | NT_011657 | AC091807 | 37085883 | 3 | 80191 | 2426 | 0 | 82617 |
| S/G/Y/R/B/O |
NT_024857 | AC027551 | 8528802 | 1 |   |   | AC091809 | 37085883 | 3 | 25467 | 2381 | 0 | 27848 |
| S/G/Y/R/B/O |
NT_024857 | AC027551 | 8528802 | 1 |   |   | AL592165 | 8514844 | 1 | 46092 | 5420 | 30452 | 81964 |
| S/G/Y/R/B/O |
NT_024857 | AC069362 | 8538699 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_024857 | AC069362 | 8538699 | 3 | chrX | NT_011657 | AC091806 | 36985163 | 3 | 11930 | 0 | 0 | 11930 |
| S/G/Y/R/B/O |
NT_024857 | AC069362 | 8538699 | 3 | chrX | NT_011657 | AC091807 | 37085883 | 3 | 164565 | 0 | 0 | 164565 |
| S/G/Y/R/B/O |
NT_024857 | AC069362 | 8538699 | 3 |   |   | AL592165 | 145589636 | 1 | 55123 | 2689 | 34099 | 91911 |
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