|
| |
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
| |
| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010664 | AC079072 | 77581537 | 1 | chr17 | NT_010664 | AC073624 | 77582510 | 1 | 69376 | 11854 | 10786 | 92016 |
| S/G/Y/R/B/O |
NT_010664 | AC079072 | 77581537 | 1 | chr17 | NT_010664 | AC020689 | 77773643 | 3 | 13464 | 1810 | 600 | 15874 |
| S/G/Y/R/B/O |
NT_010664 | AC079072 | 77581537 | 1 | chr17 | NT_010664 | AC021534 | 77672525 | 2 | 54734 | 15538 | 10290 | 80562 |
| S/G/Y/R/B/O |
NT_010664 | AC079072 | 77581537 | 1 | chr17 | NT_010664 | AC079359 | 77693352 | 1 | 31638 | 10930 | 10945 | 53513 |
| S/G/Y/R/B/O |
NT_010664 | AC073624 | 77582510 | 1 | chr17 | NT_010664 | AC021534 | 77672525 | 2 | 39583 | 0 | 0 | 39583 |
| S/G/Y/R/B/O |
NT_010664 | AC073624 | 77582510 | 1 | chr17 | NT_010664 | AC079359 | 77693352 | 1 | 96678 | 2080 | 16914 | 115672 |
| S/G/Y/R/B/O |
NT_010664 | AC021534 | 77672525 | 2 | chr17 | NT_010664 | AC079359 | 77693352 | 1 | 17587 | 0 | 11387 | 28974 |
| S/G/Y/R/B/O |
NT_010664 | AC021534 | 77672525 | 2 | chr17 | NT_010664 | AC020689 | 77773643 | 3 | 84006 | 0 | 0 | 84006 |
| S/G/Y/R/B/O |
NT_010664 | AC021534 | 77672525 | 2 | chr17 | NT_010664 | AC079072 | 77581537 | 1 | 54734 | 15538 | 10290 | 80562 |
| S/G/Y/R/B/O |
NT_010664 | AC079359 | 77693352 | 1 | chr17 | NT_010664 | AC020689 | 77773643 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010664 | AC079359 | 77693352 | 1 | chr17 | NT_010664 | AC073624 | 77582510 | 1 | 96678 | 2080 | 16914 | 115672 |
| S/G/Y/R/B/O |
NT_010664 | AC079359 | 77693352 | 1 | chr17 | NT_010664 | AC079072 | 77581537 | 1 | 31638 | 10930 | 10945 | 53513 |
| S/G/Y/R/B/O |
NT_010664 | AC020689 | 77773643 | 3 | chr17 | NT_010664 | AC026373 | 77988445 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010664 | AC020689 | 77773643 | 3 | chr17 | NT_010664 | AC021534 | 77672525 | 2 | 84006 | 0 | 0 | 84006 |
| S/G/Y/R/B/O |
NT_010664 | AC020689 | 77773643 | 3 | chr17 | NT_010664 | AC079072 | 77581537 | 1 | 13464 | 1810 | 600 | 15874 |
| S/G/Y/R/B/O |
NT_010664 | AC026373 | 77988445 | 1 | chr17 | NT_010664 | AC016048 | 77991406 | 1 | 80409 | 4078 | 35789 | 120276 |
| S/G/Y/R/B/O |
NT_010664 | AC026373 | 77988445 | 1 | chr17 | NT_010664 | AC105337 | 78349055 | 2 | 13596 | 0 | 8540 | 22136 |
| S/G/Y/R/B/O |
NT_010664 | AC016048 | 77991406 | 1 | chr17 | NT_010664 | AC105124 | 78139609 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010664 | AC105124 | 78139609 | 2 | chr17 | NT_010664 | AC055858 | 78222775 | 1 | 112212 | 0 | 7682 | 119894 |
| S/G/Y/R/B/O |
NT_010664 | AC105124 | 78139609 | 2 | chr17 | NT_010664 | AC027824 | 78415709 | 1 | 36894 | 4212 | 1813 | 42919 |
| S/G/Y/R/B/O |
NT_010664 | AC055858 | 78222775 | 1 | chr17 | NT_010664 | AC105337 | 78349055 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010664 | AC055858 | 78222775 | 1 | chr17 | NT_010664 | AC027824 | 78415709 | 1 | 32675 | 0 | 2033 | 34708 |
| S/G/Y/R/B/O |
NT_010664 | AC105337 | 78349055 | 2 | chr17 | NT_010664 | AC027824 | 78415709 | 1 | 2329 | 0 | 0 | 2329 |
| S/G/Y/R/B/O |
NT_010664 | AC105337 | 78349055 | 2 | chr17 | NT_010664 | AC026373 | 77988445 | 1 | 13596 | 0 | 8540 | 22136 |
| S/G/Y/R/B/O |
NT_010664 | AC027824 | 78415709 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010664 | AC027824 | 78415709 | 1 | chr17 | NT_010664 | AC055858 | 78222775 | 1 | 32675 | 0 | 2033 | 34708 |
| S/G/Y/R/B/O |
NT_010664 | AC027824 | 78415709 | 1 | chr17 | NT_010664 | AC105124 | 78139609 | 2 | 36894 | 4212 | 1813 | 42919 |
| |
|
|
|