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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_030843 | AC026271 | 20877652 | 1 | chr17 | NT_030843 | AC015534 | 20881790 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030843 | AC026271 | 20877652 | 1 | chr17 | NT_030843 | AC090285 | 21365846 | 2 | 27914 | 0 | 0 | 27914 |
| S/G/Y/R/B/O |
NT_030843 | AC026271 | 20877652 | 1 | chr17 | NT_030843 | AC105100 | 21203934 | 2 | 42741 | 0 | 37915 | 80656 |
| S/G/Y/R/B/O |
NT_030843 | AC026271 | 20877652 | 1 | chr17 | NT_030843 | AC107931 | 21010351 | 2 | 23710 | 5127 | 5997 | 34834 |
| S/G/Y/R/B/O |
NT_030843 | AC026271 | 20877652 | 1 | chr17 | NT_030843 | AC107982 | 21023160 | 2 | 13788 | 0 | 0 | 13788 |
| S/G/Y/R/B/O |
NT_030843 | AC015534 | 20881790 | 1 | chr17 | NT_030843 | AC107931 | 21010351 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030843 | AC015534 | 20881790 | 1 | chr17 | NT_030843 | AC015935 | 21578884 | 1 | 35241 | 0 | 2389 | 37630 |
| S/G/Y/R/B/O |
NT_030843 | AC015534 | 20881790 | 1 | chr1 | NT_032972 | AC026857 | 44498356 | 1 | 55118 | 2594 | 0 | 57712 |
| S/G/Y/R/B/O |
NT_030843 | AC015534 | 20881790 | 1 | chr1 | NT_032972 | AL592294 | 44283900 | 2 | 93573 | 0 | 0 | 93573 |
| S/G/Y/R/B/O |
NT_030843 | AC015534 | 20881790 | 1 |   |   | AL390915 | 44206560 | 1 | 18964 | 2772 | 0 | 21736 |
| S/G/Y/R/B/O |
NT_030843 | AC015534 | 20881790 | 1 |   |   | AL391596 | 44206560 | 1 | 45709 | 0 | 0 | 45709 |
| S/G/Y/R/B/O |
NT_030843 | AC015534 | 20881790 | 1 |   |   | AL391664 | 44206560 | 1 | 44971 | 0 | 0 | 44971 |
| S/G/Y/R/B/O |
NT_030843 | AC107931 | 21010351 | 2 | chr17 | NT_030843 | AC107982 | 21023160 | 2 | 115986 | 4857 | 0 | 120843 |
| S/G/Y/R/B/O |
NT_030843 | AC107931 | 21010351 | 2 | chr17 | NT_030843 | AC016334 | 21134214 | 1 | 13687 | 0 | 0 | 13687 |
| S/G/Y/R/B/O |
NT_030843 | AC107931 | 21010351 | 2 | chr17 | NT_030843 | AC026271 | 20877652 | 1 | 23710 | 5127 | 5997 | 34834 |
| S/G/Y/R/B/O |
NT_030843 | AC107982 | 21023160 | 2 | chr17 | NT_030843 | AC016334 | 21134214 | 1 | 56581 | 0 | 0 | 56581 |
| S/G/Y/R/B/O |
NT_030843 | AC107982 | 21023160 | 2 | chr17 | NT_030843 | AC026271 | 20877652 | 1 | 13788 | 0 | 0 | 13788 |
| S/G/Y/R/B/O |
NT_030843 | AC016334 | 21134214 | 1 | chr17 | NT_030843 | AC090286 | 21191702 | 2 | 18145 | 1523 | 0 | 19668 |
| S/G/Y/R/B/O |
NT_030843 | AC016334 | 21134214 | 1 | chr17 | NT_030843 | AC107931 | 21010351 | 2 | 13687 | 0 | 0 | 13687 |
| S/G/Y/R/B/O |
NT_030843 | AC090286 | 21191702 | 2 | chr17 | NT_030843 | AC105100 | 21203934 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030843 | AC090286 | 21191702 | 2 | chr17 | NT_030843 | AC003957 | 21394681 | 3 | 97952 | 0 | 0 | 97952 |
| S/G/Y/R/B/O |
NT_030843 | AC090286 | 21191702 | 2 | chr17 | NT_030843 | AJ009617 | 21407552 | 1 | 85074 | 0 | 0 | 85074 |
| S/G/Y/R/B/O |
NT_030843 | AC090286 | 21191702 | 2 |   |   | AL035361 | 21407552 | 3 | 35232 | 0 | 0 | 35232 |
| S/G/Y/R/B/O |
NT_030843 | AC105100 | 21203934 | 2 | chr17 | NT_030843 | AC107983 | 21327694 | 3 | 92451 | 0 | 0 | 92451 |
| S/G/Y/R/B/O |
NT_030843 | AC105100 | 21203934 | 2 | chr17 | NT_030843 | AC026271 | 20877652 | 1 | 42741 | 0 | 37915 | 80656 |
| S/G/Y/R/B/O |
NT_030843 | AC105100 | 21203934 | 2 | chr17 | NT_030843 | AC090285 | 21365846 | 2 | 80597 | 0 | 0 | 80597 |
| S/G/Y/R/B/O |
NT_030843 | AC107983 | 21327694 | 3 | chr17 | NT_030843 | AC090285 | 21365846 | 2 | 106251 | 0 | 0 | 106251 |
| S/G/Y/R/B/O |
NT_030843 | AC107983 | 21327694 | 3 |   |   | AC023401 | 11676014 | 1 | 80566 | 0 | 0 | 80566 |
| S/G/Y/R/B/O |
NT_030843 | AC090285 | 21365846 | 2 | chr17 | NT_030843 | AC003957 | 21394681 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030843 | AC090285 | 21365846 | 2 | chr17 | NT_030843 | AC026271 | 20877652 | 1 | 27914 | 0 | 0 | 27914 |
| S/G/Y/R/B/O |
NT_030843 | AC090285 | 21365846 | 2 | chr17 | NT_030843 | AC105100 | 21203934 | 2 | 80597 | 0 | 0 | 80597 |
| S/G/Y/R/B/O |
NT_030843 | AC090285 | 21365846 | 2 | chr17 | NT_010718 | AL353997 | 11745569 | 2 | 31452 | 0 | 0 | 31452 |
| S/G/Y/R/B/O |
NT_030843 | AC003957 | 21394681 | 3 | chr17 | NT_030843 | AJ009617 | 21407552 | 1 | 113618 | 0 | 0 | 113618 |
| S/G/Y/R/B/O |
NT_030843 | AC003957 | 21394681 | 3 | chr17 | NT_030843 | AC090286 | 21191702 | 2 | 97952 | 0 | 0 | 97952 |
| S/G/Y/R/B/O |
NT_030843 | AC003957 | 21394681 | 3 |   |   | AL035361 | 21407552 | 3 | 35270 | 0 | 0 | 35270 |
| S/G/Y/R/B/O |
NT_030843 | AJ009617 | 21407552 | 1 | chr17 | NT_030843 | AC007952 | 21526144 | 1 | 30093 | 0 | 0 | 30093 |
| S/G/Y/R/B/O |
NT_030843 | AJ009617 | 21407552 | 1 | chr17 | NT_030843 | AC090286 | 21191702 | 2 | 85074 | 0 | 0 | 85074 |
| S/G/Y/R/B/O |
NT_030843 | AJ009617 | 21407552 | 1 | chr17 | NT_030843 | AC106017 | 21529449 | 2 | 19274 | 2190 | 0 | 21464 |
| S/G/Y/R/B/O |
NT_030843 | AJ009617 | 21407552 | 1 |   |   | AL035361 | 21529449 | 3 | 35358 | 0 | 0 | 35358 |
| S/G/Y/R/B/O |
NT_030843 | AC007952 | 21526144 | 1 | chr17 | NT_030843 | AC106017 | 21529449 | 2 | 44131 | 4360 | 4999 | 53490 |
| S/G/Y/R/B/O |
NT_030843 | AC106017 | 21529449 | 2 | chr17 | NT_030843 | AC015935 | 21578884 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030843 | AC106017 | 21529449 | 2 | chr17 | NT_030843 | AJ009617 | 21407552 | 1 | 19274 | 2190 | 0 | 21464 |
| S/G/Y/R/B/O |
NT_030843 | AC015935 | 21578884 | 1 | chr17 | NT_030843 | AC025627 | 21598956 | 2 | 90342 | 0 | 12916 | 103258 |
| S/G/Y/R/B/O |
NT_030843 | AC015935 | 21578884 | 1 | chr17 | NT_030843 | AC015534 | 20881790 | 1 | 35241 | 0 | 2389 | 37630 |
| S/G/Y/R/B/O |
NT_030843 | AC015935 | 21578884 | 1 | chr1 | NT_032972 | AL592294 | 44283900 | 2 | 35236 | 0 | 2389 | 37625 |
| S/G/Y/R/B/O |
NT_030843 | AC015935 | 21578884 | 1 |   |   | AC113557 | 44498356 | 2 | 29396 | 2871 | 0 | 32267 |
| S/G/Y/R/B/O |
NT_030843 | AC025627 | 21598956 | 2 | chr17 | NT_030843 | AC004448 | 21735872 | 3 | 45979 | 0 | 0 | 45979 |
| S/G/Y/R/B/O |
NT_030843 | AC004448 | 21735872 | 3 | chr17 | NT_030843 | AL160492 | 21838980 | 3 | 40035 | 0 | 0 | 40035 |
| S/G/Y/R/B/O |
NT_030843 | AL160492 | 21838980 | 3 | chr17 | NT_030843 | AC036110 | 21923878 | 1 | 0 | 4947 | 72934 | 77881 |
| S/G/Y/R/B/O |
NT_030843 | AC036110 | 21923878 | 1 | chr17 | NT_030843 | AC005722 | 22047637 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030843 | AC005722 | 22047637 | 3 | chr17 | NT_030843 | AC015726 | 22238789 | 2 | 64884 | 0 | 0 | 64884 |
| S/G/Y/R/B/O |
NT_030843 | AC005722 | 22047637 | 3 |   |   | AC002490 | 21838980 | 1 | 75728 | 0 | 0 | 75728 |
| S/G/Y/R/B/O |
NT_030843 | AC005722 | 22047637 | 3 |   |   | AC002987 | 21838980 | 1 | 34661 | 0 | 0 | 34661 |
| S/G/Y/R/B/O |
NT_030843 | AC005722 | 22047637 | 3 |   |   | AC113557 | 21578884 | 2 | 137815 | 2656 | 896 | 141367 |
| S/G/Y/R/B/O |
NT_030843 | AC015726 | 22238789 | 2 | chr17 | NT_030843 | AC005730 | 22308435 | 3 | 5402 | 0 | 0 | 5402 |
| S/G/Y/R/B/O |
NT_030843 | AC015726 | 22238789 | 2 |   |   | AC002490 | 21578884 | 1 | 33565 | 0 | 0 | 33565 |
| S/G/Y/R/B/O |
NT_030843 | AC015726 | 22238789 | 2 |   |   | AC113557 | 22308435 | 2 | 19517 | 0 | 0 | 19517 |
| S/G/Y/R/B/O |
NT_030843 | AC005730 | 22308435 | 3 | chr17 | NT_030843 | AC007963 | 22465058 | 3 | 24431 | 0 | 0 | 24431 |
| S/G/Y/R/B/O |
NT_030843 | AC005730 | 22308435 | 3 |   |   | AC022286 | 22238789 | 1 | 36982 | 0 | 9507 | 46489 |
| S/G/Y/R/B/O |
NT_030843 | AC007963 | 22465058 | 3 | chr17 | NT_030843 | AC004702 | 22574114 | 3 | 0 | 1024 | 0 | 1024 |
| S/G/Y/R/B/O |
NT_030843 | AC007963 | 22465058 | 3 |   |   | AC079083 | 22308435 | 1 | 61375 | 4251 | 9824 | 75450 |
| S/G/Y/R/B/O |
NT_030843 | AC004702 | 22574114 | 3 | chr17 | NT_030843 | AC008088 | 22693909 | 3 | 22163 | 0 | 0 | 22163 |
| S/G/Y/R/B/O |
NT_030843 | AC004702 | 22574114 | 3 |   |   | AC015940 | 22693909 | 1 | 20166 | 0 | 0 | 20166 |
| S/G/Y/R/B/O |
NT_030843 | AC004702 | 22574114 | 3 |   |   | AC079083 | 22693909 | 1 | 98814 | 0 | 0 | 98814 |
| S/G/Y/R/B/O |
NT_030843 | AC008088 | 22693909 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_030843 | AC008088 | 22693909 | 3 |   |   | AC015940 | 22574114 | 1 | 96390 | 0 | 0 | 96390 |
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