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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010647 | AC007776 | 34064687 | 1 | chr17 | NT_010647 | AC019095 | 34067569 | 1 | 0 | 1842 | 19905 | 21747 |
| S/G/Y/R/B/O |
NT_010647 | AC019095 | 34067569 | 1 | chr17 | NT_010647 | AC090844 | 34069844 | 1 | 151606 | 21801 | 30619 | 204026 |
| S/G/Y/R/B/O |
NT_010647 | AC090844 | 34069844 | 1 | chr17 | NT_010647 | AC091529 | 34308668 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010647 | AC090844 | 34069844 | 1 | chr17 | NT_010647 | AC079199 | 35518801 | 1 | 20109 | 0 | 0 | 20109 |
| S/G/Y/R/B/O |
NT_010647 | AC091529 | 34308668 | 3 | chr17 | NT_010647 | AC006449 | 34466131 | 3 | 120381 | 0 | 0 | 120381 |
| S/G/Y/R/B/O |
NT_010647 | AC006449 | 34466131 | 3 | chr17 | NT_010647 | AC007901 | 34632504 | 2 | 7885 | 0 | 0 | 7885 |
| S/G/Y/R/B/O |
NT_010647 | AC006449 | 34466131 | 3 | chr17 | NT_010647 | AC024189 | 34693668 | 1 | 41850 | 0 | 31194 | 73044 |
| S/G/Y/R/B/O |
NT_010647 | AC007901 | 34632504 | 2 | chr17 | NT_010647 | AC079289 | 34668171 | 1 | 3437 | 0 | 2557 | 5994 |
| S/G/Y/R/B/O |
NT_010647 | AC007901 | 34632504 | 2 | chr17 | NT_010647 | AC024189 | 34693668 | 1 | 10979 | 0 | 5285 | 16264 |
| S/G/Y/R/B/O |
NT_010647 | AC079289 | 34668171 | 1 | chr17 | NT_010647 | AC002118 | 34671043 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010647 | AC079289 | 34668171 | 1 | chr17 | NT_010647 | AC006441 | 34696921 | 3 | 32336 | 14215 | 6674 | 53225 |
| S/G/Y/R/B/O |
NT_010647 | AC079289 | 34668171 | 1 | chr17 | NT_010647 | AC091178 | 34836390 | 3 | 30412 | 14679 | 13089 | 58180 |
| S/G/Y/R/B/O |
NT_010647 | AC002118 | 34671043 | 1 | chr17 | NT_010647 | AC024189 | 34693668 | 1 | 0 | 0 | 26834 | 26834 |
| S/G/Y/R/B/O |
NT_010647 | AC024189 | 34693668 | 1 | chr17 | NT_010647 | AC006441 | 34696921 | 3 | 32355 | 0 | 44360 | 76715 |
| S/G/Y/R/B/O |
NT_010647 | AC024189 | 34693668 | 1 | chr17 | NT_010647 | AC006449 | 34466131 | 3 | 41850 | 0 | 31194 | 73044 |
| S/G/Y/R/B/O |
NT_010647 | AC024189 | 34693668 | 1 | chr17 | NT_010647 | AC007901 | 34632504 | 2 | 10979 | 0 | 5285 | 16264 |
| S/G/Y/R/B/O |
NT_010647 | AC006441 | 34696921 | 3 | chr17 | NT_010647 | AC091178 | 34836390 | 3 | 6496 | 0 | 0 | 6496 |
| S/G/Y/R/B/O |
NT_010647 | AC006441 | 34696921 | 3 | chr17 | NT_010647 | AC079289 | 34668171 | 1 | 32336 | 14215 | 6674 | 53225 |
| S/G/Y/R/B/O |
NT_010647 | AC091178 | 34836390 | 3 | chr17 | NT_010647 | AC004408 | 34929162 | 3 | 17039 | 0 | 0 | 17039 |
| S/G/Y/R/B/O |
NT_010647 | AC091178 | 34836390 | 3 | chr17 | NT_010647 | AC079289 | 34668171 | 1 | 30412 | 14679 | 13089 | 58180 |
| S/G/Y/R/B/O |
NT_010647 | AC004408 | 34929162 | 3 | chr17 | NT_010647 | AC015910 | 35025348 | 3 | 23521 | 0 | 0 | 23521 |
| S/G/Y/R/B/O |
NT_010647 | AC004408 | 34929162 | 3 |   |   | AC021102 | 35025348 | 1 | 66464 | 3781 | 11214 | 81459 |
| S/G/Y/R/B/O |
NT_010647 | AC015910 | 35025348 | 3 | chr17 | NT_010647 | AC005288 | 35092275 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010647 | AC015910 | 35025348 | 3 |   |   | AC021102 | 34929162 | 1 | 55081 | 4210 | 13247 | 72538 |
| S/G/Y/R/B/O |
NT_010647 | AC005288 | 35092275 | 3 | chr17 | NT_010647 | AC009283 | 35219713 | 1 | 14483 | 0 | 0 | 14483 |
| S/G/Y/R/B/O |
NT_010647 | AC005288 | 35092275 | 3 |   |   | AC021102 | 35219713 | 1 | 34607 | 0 | 0 | 34607 |
| S/G/Y/R/B/O |
NT_010647 | AC009283 | 35219713 | 1 | chr17 | NT_010647 | AC110495 | 35249571 | 2 | 26178 | 0 | 64289 | 90467 |
| S/G/Y/R/B/O |
NT_010647 | AC110495 | 35249571 | 2 | chr17 | NT_010647 | AC087491 | 35379983 | 2 | 5308 | 0 | 2815 | 8123 |
| S/G/Y/R/B/O |
NT_010647 | AC087491 | 35379983 | 2 | chr17 | NT_010647 | AC040933 | 35398098 | 1 | 52303 | 0 | 89206 | 141509 |
| S/G/Y/R/B/O |
NT_010647 | AC087491 | 35379983 | 2 | chr17 | NT_010647 | AC079199 | 35518801 | 1 | 66942 | 0 | 0 | 66942 |
| S/G/Y/R/B/O |
NT_010647 | AC087491 | 35379983 | 2 |   |   | AB025285 | 35379983 | 3 | 15879 | 0 | 0 | 15879 |
| S/G/Y/R/B/O |
NT_010647 | AC087491 | 35379983 | 2 |   |   | AC025531 | 35379983 | 1 | 107224 | 7738 | 8104 | 123066 |
| S/G/Y/R/B/O |
NT_010647 | AC040933 | 35398098 | 1 | chr17 | NT_010647 | AC079199 | 35518801 | 1 | 76147 | 0 | 35814 | 111961 |
| S/G/Y/R/B/O |
NT_010647 | AC040933 | 35398098 | 1 |   |   | AC025531 | 36850173 | 1 | 79001 | 5775 | 29044 | 113820 |
| S/G/Y/R/B/O |
NT_010647 | AC079199 | 35518801 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010647 | AC079199 | 35518801 | 1 | chr17 | NT_010647 | AC087491 | 35379983 | 2 | 66942 | 0 | 0 | 66942 |
| S/G/Y/R/B/O |
NT_010647 | AC079199 | 35518801 | 1 | chr17 | NT_010647 | AC090844 | 34069844 | 1 | 20109 | 0 | 0 | 20109 |
| S/G/Y/R/B/O |
NT_010647 | AC079199 | 35518801 | 1 |   |   | AB025285 | 35379983 | 3 | 15891 | 0 | 0 | 15891 |
| S/G/Y/R/B/O |
NT_010647 | AC079199 | 35518801 | 1 |   |   | AC025531 | 34067569 | 1 | 33125 | 6130 | 1288 | 40543 |
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