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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010799 | AC015751 | 28741772 | 1 | chr17 | NT_010799 | AC027233 | 28757305 | 3 | 110160 | 0 | 0 | 110160 |
| S/G/Y/R/B/O |
NT_010799 | AC027233 | 28757305 | 3 | chr17 | NT_010799 | AC025898 | 28894855 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010799 | AC025898 | 28894855 | 3 | chr17 | NT_010799 | AC008133 | 28998809 | 3 | 80794 | 0 | 0 | 80794 |
| S/G/Y/R/B/O |
NT_010799 | AC008133 | 28998809 | 3 | chr17 | NT_010799 | AC003687 | 29173291 | 3 | 5239 | 0 | 0 | 5239 |
| S/G/Y/R/B/O |
NT_010799 | AC003687 | 29173291 | 3 | chr17 | NT_010799 | AC084809 | 29314554 | 1 | 25651 | 0 | 0 | 25651 |
| S/G/Y/R/B/O |
NT_010799 | AC003687 | 29173291 | 3 | chr17 | NT_010799 | AC090555 | 29399539 | 1 | 26056 | 0 | 0 | 26056 |
| S/G/Y/R/B/O |
NT_010799 | AC084809 | 29314554 | 1 | chr17 | NT_010799 | AC090555 | 29399539 | 1 | 98298 | 1686 | 0 | 99984 |
| S/G/Y/R/B/O |
NT_010799 | AC090555 | 29399539 | 1 | chr17 | NT_010799 | AC007982 | 29422598 | 1 | 52927 | 0 | 0 | 52927 |
| S/G/Y/R/B/O |
NT_010799 | AC090555 | 29399539 | 1 | chr17 | NT_010799 | AC003687 | 29173291 | 3 | 26056 | 0 | 0 | 26056 |
| S/G/Y/R/B/O |
NT_010799 | AC090555 | 29399539 | 1 | chr17 | NT_010799 | AC008106 | 29452801 | 1 | 20784 | 0 | 0 | 20784 |
| S/G/Y/R/B/O |
NT_010799 | AC007982 | 29422598 | 1 | chr17 | NT_010799 | AC008106 | 29452801 | 1 | 34511 | 2953 | 69226 | 106690 |
| S/G/Y/R/B/O |
NT_010799 | AC007982 | 29422598 | 1 | chr17 | NT_010799 | AC025211 | 29539656 | 3 | 25464 | 0 | 0 | 25464 |
| S/G/Y/R/B/O |
NT_010799 | AC008106 | 29452801 | 1 | chr17 | NT_010799 | AC087493 | 29484456 | 3 | 51556 | 1716 | 1010 | 54282 |
| S/G/Y/R/B/O |
NT_010799 | AC008106 | 29452801 | 1 | chr17 | NT_010799 | AC025211 | 29539656 | 3 | 92399 | 5245 | 4080 | 101724 |
| S/G/Y/R/B/O |
NT_010799 | AC008106 | 29452801 | 1 | chr17 | NT_010799 | AC090555 | 29399539 | 1 | 20784 | 0 | 0 | 20784 |
| S/G/Y/R/B/O |
NT_010799 | AC087493 | 29484456 | 3 | chr17 | NT_010799 | AC025211 | 29539656 | 3 | 13802 | 0 | 0 | 13802 |
| S/G/Y/R/B/O |
NT_010799 | AC025211 | 29539656 | 3 | chr17 | NT_010799 | AC002119 | 29660050 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010799 | AC025211 | 29539656 | 3 | chr17 | NT_010799 | AC007982 | 29422598 | 1 | 25464 | 0 | 0 | 25464 |
| S/G/Y/R/B/O |
NT_010799 | AC025211 | 29539656 | 3 | chr17 | NT_010799 | AC008106 | 29452801 | 1 | 92399 | 5245 | 4080 | 101724 |
| S/G/Y/R/B/O |
NT_010799 | AC025211 | 29539656 | 3 | chr17 | NT_010799 | AC079336 | 29768745 | 1 | 29441 | 0 | 0 | 29441 |
| S/G/Y/R/B/O |
NT_010799 | AC002119 | 29660050 | 3 | chr17 | NT_010799 | AC079336 | 29768745 | 1 | 106502 | 0 | 0 | 106502 |
| S/G/Y/R/B/O |
NT_010799 | AC079336 | 29768745 | 1 | chr17 | NT_010799 | AC005899 | 29777648 | 3 | 49382 | 3033 | 637 | 53052 |
| S/G/Y/R/B/O |
NT_010799 | AC079336 | 29768745 | 1 | chr17 | NT_010799 | AC025211 | 29539656 | 3 | 29441 | 0 | 0 | 29441 |
| S/G/Y/R/B/O |
NT_010799 | AC005899 | 29777648 | 3 | chr17 | NT_010799 | AC015941 | 29960180 | 1 | 11133 | 1367 | 0 | 12500 |
| S/G/Y/R/B/O |
NT_010799 | AC005899 | 29777648 | 3 | chr17 | NT_010799 | AC026620 | 29985059 | 1 | 37836 | 2405 | 0 | 40241 |
| S/G/Y/R/B/O |
NT_010799 | AC015941 | 29960180 | 1 | chr17 | NT_010799 | AC026620 | 29985059 | 1 | 140365 | 0 | 0 | 140365 |
| S/G/Y/R/B/O |
NT_010799 | AC015941 | 29960180 | 1 | chr17 | NT_010799 | AC021852 | 29985782 | 1 | 99234 | 7638 | 13149 | 120021 |
| S/G/Y/R/B/O |
NT_010799 | AC026620 | 29985059 | 1 | chr17 | NT_010799 | AC021852 | 29985782 | 1 | 42453 | 4006 | 35227 | 81686 |
| S/G/Y/R/B/O |
NT_010799 | AC026620 | 29985059 | 1 | chr17 | NT_010799 | AC005899 | 29777648 | 3 | 37836 | 2405 | 0 | 40241 |
| S/G/Y/R/B/O |
NT_010799 | AC021852 | 29985782 | 1 | chr17 | NT_010799 | AC090616 | 30055263 | 1 | 31107 | 376 | 5814 | 37297 |
| S/G/Y/R/B/O |
NT_010799 | AC021852 | 29985782 | 1 | chr17 | NT_010799 | AC015941 | 29960180 | 1 | 99234 | 7638 | 13149 | 120021 |
| S/G/Y/R/B/O |
NT_010799 | AC021852 | 29985782 | 1 | chr17 | NT_010799 | AC023278 | 31820127 | 1 | 17868 | 1681 | 3034 | 22583 |
| S/G/Y/R/B/O |
NT_010799 | AC090616 | 30055263 | 1 | chr17 | NT_010799 | AC003041 | 30143202 | 3 | 25743 | 0 | 0 | 25743 |
| S/G/Y/R/B/O |
NT_010799 | AC090616 | 30055263 | 1 | chr17 | NT_010799 | AC023278 | 31820127 | 1 | 80878 | 15462 | 61382 | 157722 |
| S/G/Y/R/B/O |
NT_010799 | AC003041 | 30143202 | 3 | chr17 | NT_010799 | AC004253 | 30220050 | 3 | 4611 | 0 | 0 | 4611 |
| S/G/Y/R/B/O |
NT_010799 | AC003041 | 30143202 | 3 | chr17 | NT_010799 | AC023278 | 31820127 | 1 | 16793 | 0 | 13318 | 30111 |
| S/G/Y/R/B/O |
NT_010799 | AC004253 | 30220050 | 3 | chr17 | NT_010799 | AC007923 | 30315737 | 3 | 30393 | 0 | 0 | 30393 |
| S/G/Y/R/B/O |
NT_010799 | AC007923 | 30315737 | 3 | chr17 | NT_010799 | AC003101 | 30496007 | 3 | 7273 | 0 | 0 | 7273 |
| S/G/Y/R/B/O |
NT_010799 | AC007923 | 30315737 | 3 |   |   | AC019148 | 30220050 | 1 | 110995 | 0 | 15794 | 126789 |
| S/G/Y/R/B/O |
NT_010799 | AC003101 | 30496007 | 3 | chr17 | NT_010799 | AC004526 | 30697114 | 3 | 68838 | 0 | 0 | 68838 |
| S/G/Y/R/B/O |
NT_010799 | AC003101 | 30496007 | 3 |   |   | AC019148 | 30315737 | 1 | 69717 | 5443 | 13422 | 88582 |
| S/G/Y/R/B/O |
NT_010799 | AC004526 | 30697114 | 3 | chr17 | NT_010799 | AC079915 | 30926040 | 3 | 43487 | 0 | 0 | 43487 |
| S/G/Y/R/B/O |
NT_010799 | AC004526 | 30697114 | 3 |   |   | AC004222 | 30496007 | 3 | 80522 | 0 | 0 | 80522 |
| S/G/Y/R/B/O |
NT_010799 | AC004526 | 30697114 | 3 |   |   | L05367 | 30926040 | 3 | 100337 | 0 | 0 | 100337 |
| S/G/Y/R/B/O |
NT_010799 | AC079915 | 30926040 | 3 | chr17 | NT_010799 | AC027793 | 31027627 | 1 | 23094 | 0 | 0 | 23094 |
| S/G/Y/R/B/O |
NT_010799 | AC079915 | 30926040 | 3 |   |   | AC004222 | 30926040 | 3 | 82050 | 0 | 0 | 82050 |
| S/G/Y/R/B/O |
NT_010799 | AC027793 | 31027627 | 1 | chr17 | NT_010799 | AC011824 | 31163903 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010799 | AC027793 | 31027627 | 1 | chr17 | NT_010799 | AC004666 | 31643978 | 2 | 21145 | 0 | 15102 | 36247 |
| S/G/Y/R/B/O |
NT_010799 | AC011824 | 31163903 | 2 | chr17 | NT_010799 | AC024614 | 31305641 | 3 | 17863 | 0 | 0 | 17863 |
| S/G/Y/R/B/O |
NT_010799 | AC011824 | 31163903 | 2 |   |   | AF148647 | 31305641 | 3 | 22377 | 0 | 0 | 22377 |
| S/G/Y/R/B/O |
NT_010799 | AC024614 | 31305641 | 3 | chr17 | NT_010799 | AC078907 | 31446309 | 3 | 38991 | 0 | 0 | 38991 |
| S/G/Y/R/B/O |
NT_010799 | AC024614 | 31305641 | 3 |   |   | AF148647 | 31446309 | 3 | 46448 | 0 | 0 | 46448 |
| S/G/Y/R/B/O |
NT_010799 | AC078907 | 31446309 | 3 | chr17 | NT_010799 | AC024610 | 31457398 | 3 | 53791 | 0 | 0 | 53791 |
| S/G/Y/R/B/O |
NT_010799 | AC078907 | 31446309 | 3 |   |   | AC090611 | 31305641 | 1 | 47213 | 1617 | 0 | 48830 |
| S/G/Y/R/B/O |
NT_010799 | AC078907 | 31446309 | 3 |   |   | AL356138 | 31305641 | 1 | 50819 | 0 | 1819 | 52638 |
| S/G/Y/R/B/O |
NT_010799 | AC024610 | 31457398 | 3 | chr17 | NT_010799 | AC103948 | 31633689 | 3 | 62102 | 0 | 0 | 62102 |
| S/G/Y/R/B/O |
NT_010799 | AC024610 | 31457398 | 3 |   |   | AC090611 | 31446309 | 1 | 154092 | 0 | 0 | 154092 |
| S/G/Y/R/B/O |
NT_010799 | AC024610 | 31457398 | 3 |   |   | AL356138 | 31633689 | 1 | 139637 | 5317 | 1819 | 146773 |
| S/G/Y/R/B/O |
NT_010799 | AC103948 | 31633689 | 3 | chr17 | NT_010799 | AC004666 | 31643978 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010799 | AC103948 | 31633689 | 3 |   |   | AC090611 | 31457398 | 1 | 37381 | 0 | 0 | 37381 |
| S/G/Y/R/B/O |
NT_010799 | AC103948 | 31633689 | 3 |   |   | AL356138 | 31457398 | 1 | 48316 | 2403 | 0 | 50719 |
| S/G/Y/R/B/O |
NT_010799 | AC004666 | 31643978 | 2 | chr17 | NT_010799 | AC091177 | 31794054 | 3 | 16523 | 0 | 0 | 16523 |
| S/G/Y/R/B/O |
NT_010799 | AC004666 | 31643978 | 2 | chr17 | NT_010799 | AC027793 | 31027627 | 1 | 21145 | 0 | 15102 | 36247 |
| S/G/Y/R/B/O |
NT_010799 | AC091177 | 31794054 | 3 | chr17 | NT_010799 | AC023278 | 31820127 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010799 | AC023278 | 31820127 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010799 | AC023278 | 31820127 | 1 | chr17 | NT_010799 | AC003041 | 30143202 | 3 | 16793 | 0 | 13318 | 30111 |
| S/G/Y/R/B/O |
NT_010799 | AC023278 | 31820127 | 1 | chr17 | NT_010799 | AC021852 | 29985782 | 1 | 17868 | 1681 | 3034 | 22583 |
| S/G/Y/R/B/O |
NT_010799 | AC023278 | 31820127 | 1 | chr17 | NT_010799 | AC090616 | 30055263 | 1 | 80878 | 15462 | 61382 | 157722 |
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