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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_024897 | AC068868 | 40899891 | 1 | chr17 | NT_024897 | AC022454 | 40908097 | 1 | 140065 | 15220 | 2447 | 157732 |
| S/G/Y/R/B/O |
NT_024897 | AC068868 | 40899891 | 1 | chr6 | NT_007592 | AC015965 | 63895203 | 1 | 10571 | 27531 | 15191 | 53293 |
| S/G/Y/R/B/O |
NT_024897 | AC068868 | 40899891 | 1 | chr17 | NT_024897 | AC032019 | 40933630 | 1 | 19687 | 4751 | 0 | 24438 |
| S/G/Y/R/B/O |
NT_024897 | AC022454 | 40908097 | 1 | chr17 | NT_024897 | AC032019 | 40933630 | 1 | 61966 | 3737 | 0 | 65703 |
| S/G/Y/R/B/O |
NT_024897 | AC022454 | 40908097 | 1 | chr6 | NT_007592 | AC015965 | 63895203 | 1 | 23620 | 21297 | 6864 | 51781 |
| S/G/Y/R/B/O |
NT_024897 | AC032019 | 40933630 | 1 | chr17 | NT_024897 | AC022169 | 40993810 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024897 | AC032019 | 40933630 | 1 | chr17 | NT_024897 | AC023146 | 41004012 | 1 | 36680 | 0 | 1128 | 37808 |
| S/G/Y/R/B/O |
NT_024897 | AC032019 | 40933630 | 1 | chr17 | NT_024897 | AC068868 | 40899891 | 1 | 19687 | 4751 | 0 | 24438 |
| S/G/Y/R/B/O |
NT_024897 | AC032019 | 40933630 | 1 |   |   | AC092715 | 40899891 | 1 | 28852 | 2481 | 2412 | 33745 |
| S/G/Y/R/B/O |
NT_024897 | AC022169 | 40993810 | 1 | chr17 | NT_024897 | AC023266 | 40998713 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024897 | AC022169 | 40993810 | 1 | chr17 | NT_024897 | AC023389 | 41634108 | 1 | 17070 | 0 | 26230 | 43300 |
| S/G/Y/R/B/O |
NT_024897 | AC022169 | 40993810 | 1 | chr17 | NT_024897 | AC087510 | 41511397 | 1 | 71637 | 0 | 100923 | 172560 |
| S/G/Y/R/B/O |
NT_024897 | AC022169 | 40993810 | 1 | chr17 | NT_024897 | AC104982 | 41289128 | 2 | 74024 | 1588 | 0 | 75612 |
| S/G/Y/R/B/O |
NT_024897 | AC023266 | 40998713 | 1 | chr17 | NT_024897 | AC023146 | 41004012 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024897 | AC023266 | 40998713 | 1 | chr17 | NT_024897 | AC005562 | 42880505 | 3 | 63691 | 5005 | 0 | 68696 |
| S/G/Y/R/B/O |
NT_024897 | AC023146 | 41004012 | 1 | chr17 | NT_024897 | AC087301 | 41162229 | 1 | 0 | 0 | 552 | 552 |
| S/G/Y/R/B/O |
NT_024897 | AC023146 | 41004012 | 1 | chr17 | NT_024897 | AC032019 | 40933630 | 1 | 36680 | 0 | 1128 | 37808 |
| S/G/Y/R/B/O |
NT_024897 | AC023146 | 41004012 | 1 |   |   | AC092715 | 41162229 | 1 | 104997 | 8260 | 24235 | 137492 |
| S/G/Y/R/B/O |
NT_024897 | AC087301 | 41162229 | 1 | chr17 | NT_024897 | AC084334 | 41162556 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024897 | AC087301 | 41162229 | 1 | chr17 | NT_024897 | AC026091 | 42100803 | 1 | 158380 | 15203 | 15107 | 188690 |
| S/G/Y/R/B/O |
NT_024897 | AC084334 | 41162556 | 2 | chr17 | NT_024897 | AC104982 | 41289128 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024897 | AC084334 | 41162556 | 2 | chr17 | NT_024897 | AC025198 | 41809010 | 1 | 35487 | 0 | 4586 | 40073 |
| S/G/Y/R/B/O |
NT_024897 | AC104982 | 41289128 | 2 | chr17 | NT_024897 | AC104996 | 41345122 | 3 | 55247 | 2797 | 0 | 58044 |
| S/G/Y/R/B/O |
NT_024897 | AC104982 | 41289128 | 2 | chr17 | NT_024897 | AC022169 | 40993810 | 1 | 74024 | 1588 | 0 | 75612 |
| S/G/Y/R/B/O |
NT_024897 | AC104982 | 41289128 | 2 | chr17 | NT_024897 | AC087510 | 41511397 | 1 | 73931 | 1490 | 683 | 76104 |
| S/G/Y/R/B/O |
NT_024897 | AC104996 | 41345122 | 3 | chr17 | NT_024897 | AC104984 | 41445677 | 2 | 5471 | 0 | 0 | 5471 |
| S/G/Y/R/B/O |
NT_024897 | AC104996 | 41345122 | 3 |   |   | AC108722 | 41445677 | 1 | 25912 | 8821 | 1934 | 36667 |
| S/G/Y/R/B/O |
NT_024897 | AC104984 | 41445677 | 2 | chr17 | NT_024897 | AC087510 | 41511397 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024897 | AC104984 | 41445677 | 2 | chr17 | NT_024897 | AC024065 | 42498424 | 1 | 93471 | 0 | 0 | 93471 |
| S/G/Y/R/B/O |
NT_024897 | AC104984 | 41445677 | 2 |   |   | AC087644 | 42498424 | 1 | 75980 | 0 | 4766 | 80746 |
| S/G/Y/R/B/O |
NT_024897 | AC087510 | 41511397 | 1 | chr17 | NT_024897 | AC023389 | 41634108 | 1 | 63924 | 2149 | 19183 | 85256 |
| S/G/Y/R/B/O |
NT_024897 | AC087510 | 41511397 | 1 | chr17 | NT_024897 | AC022169 | 40993810 | 1 | 71637 | 0 | 100923 | 172560 |
| S/G/Y/R/B/O |
NT_024897 | AC087510 | 41511397 | 1 | chr17 | NT_024897 | AC104982 | 41289128 | 2 | 73931 | 1490 | 683 | 76104 |
| S/G/Y/R/B/O |
NT_024897 | AC023389 | 41634108 | 1 | chr17 | NT_024897 | AC025198 | 41809010 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024897 | AC023389 | 41634108 | 1 | chr17 | NT_024897 | AC022169 | 40993810 | 1 | 17070 | 0 | 26230 | 43300 |
| S/G/Y/R/B/O |
NT_024897 | AC025198 | 41809010 | 1 | chr17 | NT_024897 | AC097641 | 41992795 | 1 | 36560 | 0 | 0 | 36560 |
| S/G/Y/R/B/O |
NT_024897 | AC025198 | 41809010 | 1 | chr17 | NT_024897 | AC018350 | 42154427 | 1 | 36572 | 0 | 0 | 36572 |
| S/G/Y/R/B/O |
NT_024897 | AC025198 | 41809010 | 1 | chr17 | NT_024897 | AC084334 | 41162556 | 2 | 35487 | 0 | 4586 | 40073 |
| S/G/Y/R/B/O |
NT_024897 | AC097641 | 41992795 | 1 | chr17 | NT_024897 | AC026091 | 42100803 | 1 | 9785 | 0 | 0 | 9785 |
| S/G/Y/R/B/O |
NT_024897 | AC097641 | 41992795 | 1 | chr17 | NT_024897 | AC018350 | 42154427 | 1 | 108590 | 0 | 45507 | 154097 |
| S/G/Y/R/B/O |
NT_024897 | AC026091 | 42100803 | 1 | chr17 | NT_024897 | AC018350 | 42154427 | 1 | 17007 | 0 | 0 | 17007 |
| S/G/Y/R/B/O |
NT_024897 | AC026091 | 42100803 | 1 | chr17 | NT_024897 | AC087301 | 41162229 | 1 | 158380 | 15203 | 15107 | 188690 |
| S/G/Y/R/B/O |
NT_024897 | AC018350 | 42154427 | 1 | chr17 | NT_024897 | AC024065 | 42498424 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024897 | AC018350 | 42154427 | 1 | chr17 | NT_024897 | AC025198 | 41809010 | 1 | 36572 | 0 | 0 | 36572 |
| S/G/Y/R/B/O |
NT_024897 | AC018350 | 42154427 | 1 | chr17 | NT_024897 | AC097641 | 41992795 | 1 | 108590 | 0 | 45507 | 154097 |
| S/G/Y/R/B/O |
NT_024897 | AC024065 | 42498424 | 1 | chr17 | NT_024897 | AC090685 | 42529825 | 3 | 72378 | 0 | 0 | 72378 |
| S/G/Y/R/B/O |
NT_024897 | AC024065 | 42498424 | 1 | chr17 | NT_024897 | AC104984 | 41445677 | 2 | 93471 | 0 | 0 | 93471 |
| S/G/Y/R/B/O |
NT_024897 | AC024065 | 42498424 | 1 |   |   | AC087644 | 41992795 | 1 | 122406 | 0 | 28339 | 150745 |
| S/G/Y/R/B/O |
NT_024897 | AC090685 | 42529825 | 3 | chr17 | NT_024897 | AC006050 | 42700965 | 3 | 81612 | 0 | 0 | 81612 |
| S/G/Y/R/B/O |
NT_024897 | AC090685 | 42529825 | 3 |   |   | AC002317 | 41445677 | 1 | 47916 | 0 | 0 | 47916 |
| S/G/Y/R/B/O |
NT_024897 | AC090685 | 42529825 | 3 |   |   | AC087644 | 42498424 | 1 | 73832 | 0 | 0 | 73832 |
| S/G/Y/R/B/O |
NT_024897 | AC006050 | 42700965 | 3 | chr17 | NT_024897 | AC011840 | 42782099 | 1 | 54627 | 0 | 0 | 54627 |
| S/G/Y/R/B/O |
NT_024897 | AC006050 | 42700965 | 3 |   |   | AC002317 | 42498424 | 1 | 94284 | 0 | 0 | 94284 |
| S/G/Y/R/B/O |
NT_024897 | AC011840 | 42782099 | 1 | chr17 | NT_024897 | AC005562 | 42880505 | 3 | 93742 | 0 | 14478 | 108220 |
| S/G/Y/R/B/O |
NT_024897 | AC011840 | 42782099 | 1 |   |   | AC002317 | 42529825 | 1 | 18830 | 0 | 0 | 18830 |
| S/G/Y/R/B/O |
NT_024897 | AC005562 | 42880505 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_024897 | AC005562 | 42880505 | 3 | chr17 | NT_024897 | AC023266 | 40998713 | 1 | 63691 | 5005 | 0 | 68696 |
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