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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010736 | AC004147 | 31894393 | 3 | chr17 | NT_010736 | AC005549 | 32031442 | 3 | 0 | 1994 | 0 | 1994 |
| S/G/Y/R/B/O |
NT_010736 | AC005549 | 32031442 | 3 | chr17 | NT_010736 | AC011193 | 32178858 | 1 | 7426 | 0 | 0 | 7426 |
| S/G/Y/R/B/O |
NT_010736 | AC005549 | 32031442 | 3 |   |   | Y18933 | 32178858 | 3 | 11772 | 0 | 0 | 11772 |
| S/G/Y/R/B/O |
NT_010736 | AC011193 | 32178858 | 1 | chr17 | NT_010736 | AC002482 | 32209183 | 3 | 105653 | 0 | 0 | 105653 |
| S/G/Y/R/B/O |
NT_010736 | AC011193 | 32178858 | 1 | chr17 | NT_010736 | AC012336 | 32316998 | 3 | 37341 | 0 | 0 | 37341 |
| S/G/Y/R/B/O |
NT_010736 | AC002482 | 32209183 | 3 | chr17 | NT_010736 | AC012336 | 32316998 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010736 | AC012336 | 32316998 | 3 | chr17 | NT_010736 | AC005691 | 32355401 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010736 | AC012336 | 32316998 | 3 | chr17 | NT_010736 | AC011193 | 32178858 | 1 | 37341 | 0 | 0 | 37341 |
| S/G/Y/R/B/O |
NT_010736 | AC005691 | 32355401 | 3 | chr17 | NT_010736 | AC110605 | 32510221 | 2 | 126544 | 1869 | 1406 | 129819 |
| S/G/Y/R/B/O |
NT_010736 | AC005691 | 32355401 | 3 |   |   | AC091579 | 32178858 | 1 | 31560 | 0 | 1583 | 33143 |
| S/G/Y/R/B/O |
NT_010736 | AC110605 | 32510221 | 2 | chr17 | NT_010736 | AC005552 | 32520600 | 3 | 28945 | 0 | 0 | 28945 |
| S/G/Y/R/B/O |
NT_010736 | AC110605 | 32510221 | 2 |   |   | AC091579 | 32355401 | 1 | 39125 | 0 | 14115 | 53240 |
| S/G/Y/R/B/O |
NT_010736 | AC005552 | 32520600 | 3 | chr17 | NT_010736 | AC022903 | 32686437 | 3 | 21129 | 0 | 0 | 21129 |
| S/G/Y/R/B/O |
NT_010736 | AC005552 | 32520600 | 3 |   |   | AC004100 | 32355401 | 3 | 32973 | 0 | 0 | 32973 |
| S/G/Y/R/B/O |
NT_010736 | AC005552 | 32520600 | 3 |   |   | AC091579 | 32686437 | 1 | 59198 | 0 | 87258 | 146456 |
| S/G/Y/R/B/O |
NT_010736 | AC022903 | 32686437 | 3 | chr17 | NT_010736 | AC004223 | 32857117 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010736 | AC022903 | 32686437 | 3 |   |   | AC004100 | 32510221 | 3 | 83710 | 0 | 0 | 83710 |
| S/G/Y/R/B/O |
NT_010736 | AC022903 | 32686437 | 3 |   |   | AF491645 | 32520600 | 3 | 15544 | 0 | 0 | 15544 |
| S/G/Y/R/B/O |
NT_010736 | AC004223 | 32857117 | 3 | chr17 | NT_010736 | AC022916 | 32952337 | 3 | 57279 | 0 | 0 | 57279 |
| S/G/Y/R/B/O |
NT_010736 | AC004223 | 32857117 | 3 |   |   | AF491645 | 32952337 | 3 | 15244 | 0 | 0 | 15244 |
| S/G/Y/R/B/O |
NT_010736 | AC022916 | 32952337 | 3 | chr17 | NT_010736 | AC022706 | 33110811 | 2 | 76392 | 0 | 0 | 76392 |
| S/G/Y/R/B/O |
NT_010736 | AC022706 | 33110811 | 2 | chr17 | NT_010736 | AC060766 | 33129875 | 2 | 66718 | 0 | 0 | 66718 |
| S/G/Y/R/B/O |
NT_010736 | AC060766 | 33129875 | 2 | chr17 | NT_010736 | AC068576 | 33299550 | 3 | 57664 | 0 | 0 | 57664 |
| S/G/Y/R/B/O |
NT_010736 | AC060766 | 33129875 | 2 | chr17 | NT_010736 | AC015911 | 33331939 | 3 | 25171 | 0 | 0 | 25171 |
| S/G/Y/R/B/O |
NT_010736 | AC068576 | 33299550 | 3 | chr17 | NT_010736 | AC015911 | 33331939 | 3 | 57657 | 0 | 0 | 57657 |
| S/G/Y/R/B/O |
NT_010736 | AC015911 | 33331939 | 3 | chr17 | NT_010736 | AC004134 | 33455842 | 3 | 5460 | 0 | 0 | 5460 |
| S/G/Y/R/B/O |
NT_010736 | AC015911 | 33331939 | 3 | chr17 | NT_010736 | AC060766 | 33129875 | 2 | 25171 | 0 | 0 | 25171 |
| S/G/Y/R/B/O |
NT_010736 | AC015911 | 33331939 | 3 |   |   | AC019325 | 33455842 | 1 | 16606 | 0 | 20080 | 36686 |
| S/G/Y/R/B/O |
NT_010736 | AC004134 | 33455842 | 3 | chr17 | NT_010736 | AC006237 | 33569683 | 3 | 0 | 1991 | 0 | 1991 |
| S/G/Y/R/B/O |
NT_010736 | AC004134 | 33455842 | 3 |   |   | AC019325 | 33331939 | 1 | 49820 | 0 | 8655 | 58475 |
| S/G/Y/R/B/O |
NT_010736 | AC004134 | 33455842 | 3 |   |   | AC023247 | 33331939 | 1 | 18272 | 0 | 0 | 18272 |
| S/G/Y/R/B/O |
NT_010736 | AC006237 | 33569683 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010736 | AC006237 | 33569683 | 3 |   |   | AC023247 | 33455842 | 1 | 82171 | 0 | 0 | 82171 |
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