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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_024901 | AC080112 | 35922044 | 1 | chr17 | NT_024901 | AC015851 | 35978680 | 1 | 99103 | 0 | 13896 | 112999 |
| S/G/Y/R/B/O |
NT_024901 | AC080112 | 35922044 | 1 | chr17 | NT_024901 | AC018629 | 36118348 | 1 | 54935 | 0 | 7082 | 62017 |
| S/G/Y/R/B/O |
NT_024901 | AC080112 | 35922044 | 1 | chr17 | NT_024901 | AC090426 | 36034695 | 3 | 105743 | 0 | 13899 | 119642 |
| S/G/Y/R/B/O |
NT_024901 | AC015851 | 35978680 | 1 | chr17 | NT_024901 | AC090426 | 36034695 | 3 | 123617 | 0 | 619 | 124236 |
| S/G/Y/R/B/O |
NT_024901 | AC015851 | 35978680 | 1 | chr17 | NT_024901 | AC018629 | 36118348 | 1 | 37035 | 1943 | 1319 | 40297 |
| S/G/Y/R/B/O |
NT_024901 | AC015851 | 35978680 | 1 |   |   | AJ297538 | 36034695 | 3 | 16907 | 0 | 0 | 16907 |
| S/G/Y/R/B/O |
NT_024901 | AC090426 | 36034695 | 3 | chr17 | NT_024901 | AC018629 | 36118348 | 1 | 54859 | 0 | 7108 | 61967 |
| S/G/Y/R/B/O |
NT_024901 | AC090426 | 36034695 | 3 | chr17 | NT_024901 | AC080112 | 35922044 | 1 | 105743 | 0 | 13899 | 119642 |
| S/G/Y/R/B/O |
NT_024901 | AC090426 | 36034695 | 3 |   |   | AJ297538 | 35922044 | 3 | 16904 | 0 | 0 | 16904 |
| S/G/Y/R/B/O |
NT_024901 | AC018629 | 36118348 | 1 | chr17 | NT_024901 | AC016960 | 36189896 | 1 | 7107 | 6563 | 16295 | 29965 |
| S/G/Y/R/B/O |
NT_024901 | AC018629 | 36118348 | 1 | chr17 | NT_024901 | AC015851 | 35978680 | 1 | 37035 | 1943 | 1319 | 40297 |
| S/G/Y/R/B/O |
NT_024901 | AC018629 | 36118348 | 1 | chr17 | NT_024901 | AC080112 | 35922044 | 1 | 54935 | 0 | 7082 | 62017 |
| S/G/Y/R/B/O |
NT_024901 | AC018629 | 36118348 | 1 |   |   | Y12508 | 36034695 | 3 | 21605 | 0 | 0 | 21605 |
| S/G/Y/R/B/O |
NT_024901 | AC016960 | 36189896 | 1 | chr17 | NT_024901 | AC004585 | 36191227 | 3 | 4025 | 6915 | 25936 | 36876 |
| S/G/Y/R/B/O |
NT_024901 | AC004585 | 36191227 | 3 | chr17 | NT_024901 | AC073508 | 36325028 | 3 | 46889 | 0 | 0 | 46889 |
| S/G/Y/R/B/O |
NT_024901 | AC073508 | 36325028 | 3 | chr17 | NT_024901 | AC005919 | 36379931 | 3 | 54624 | 0 | 0 | 54624 |
| S/G/Y/R/B/O |
NT_024901 | AC005919 | 36379931 | 3 | chr17 | NT_024901 | AC090283 | 36481605 | 2 | 112860 | 0 | 0 | 112860 |
| S/G/Y/R/B/O |
NT_024901 | AC090283 | 36481605 | 2 | chr17 | NT_024901 | AC004231 | 36512961 | 3 | 23753 | 0 | 0 | 23753 |
| S/G/Y/R/B/O |
NT_024901 | AC004231 | 36512961 | 3 | chr17 | NT_024901 | AC007455 | 36649983 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024901 | AC004231 | 36512961 | 3 | chr17 | NT_024901 | AC037482 | 36736238 | 3 | 21155 | 0 | 0 | 21155 |
| S/G/Y/R/B/O |
NT_024901 | AC004231 | 36512961 | 3 |   |   | X73501 | 36481605 | 3 | 17939 | 0 | 0 | 17939 |
| S/G/Y/R/B/O |
NT_024901 | AC007455 | 36649983 | 3 | chr17 | NT_024901 | AC037482 | 36736238 | 3 | 88250 | 0 | 0 | 88250 |
| S/G/Y/R/B/O |
NT_024901 | AC037482 | 36736238 | 3 | chr17 | NT_024901 | AC025904 | 36814779 | 1 | 73779 | 2583 | 0 | 76362 |
| S/G/Y/R/B/O |
NT_024901 | AC037482 | 36736238 | 3 | chr17 | NT_024901 | AC004231 | 36512961 | 3 | 21155 | 0 | 0 | 21155 |
| S/G/Y/R/B/O |
NT_024901 | AC037482 | 36736238 | 3 | chr3 | NT_033031 | AC107303 | 98453521 | 1 | 53060 | 0 | 21508 | 74568 |
| S/G/Y/R/B/O |
NT_024901 | AC025904 | 36814779 | 1 | chr17 | NT_024901 | AC019349 | 36821847 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024901 | AC025904 | 36814779 | 1 | chr17 | NT_024901 | AC006070 | 36895981 | 3 | 75356 | 2265 | 0 | 77621 |
| S/G/Y/R/B/O |
NT_024901 | AC025904 | 36814779 | 1 | chr3 | NT_033031 | AC107303 | 98453521 | 1 | 73840 | 3874 | 23422 | 101136 |
| S/G/Y/R/B/O |
NT_024901 | AC019349 | 36821847 | 1 | chr17 | NT_024901 | AC105208 | 36878616 | 2 | 51003 | 0 | 0 | 51003 |
| S/G/Y/R/B/O |
NT_024901 | AC019349 | 36821847 | 1 |   |   | X90761 | 36878616 | 3 | 14038 | 0 | 0 | 14038 |
| S/G/Y/R/B/O |
NT_024901 | AC105208 | 36878616 | 2 | chr17 | NT_024901 | AC006070 | 36895981 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024901 | AC006070 | 36895981 | 3 | chr17 | NT_024901 | AC003958 | 37057968 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_024901 | AC006070 | 36895981 | 3 | chr17 | NT_024901 | AC025904 | 36814779 | 1 | 75356 | 2265 | 0 | 77621 |
| S/G/Y/R/B/O |
NT_024901 | AC006070 | 36895981 | 3 | chr3 | NT_033031 | AC107303 | 98453521 | 1 | 32589 | 0 | 47755 | 80344 |
| S/G/Y/R/B/O |
NT_024901 | AC003958 | 37057968 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_024901 | AC003958 | 37057968 | 3 |   |   | NG_000018 | 36821847 | 3 | 100000 | 0 | 0 | 100000 |
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