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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010748 | AC008105 | 46269808 | 1 | chr17 | NT_010748 | AC024047 | 46315138 | 1 | 37053 | 6138 | 16093 | 59284 |
| S/G/Y/R/B/O |
NT_010748 | AC008105 | 46269808 | 1 | chr17 | NT_010748 | AC087298 | 46321232 | 2 | 47168 | 4649 | 5786 | 57603 |
| S/G/Y/R/B/O |
NT_010748 | AC024047 | 46315138 | 1 | chr17 | NT_010748 | AC087298 | 46321232 | 2 | 43779 | 8328 | 14743 | 66850 |
| S/G/Y/R/B/O |
NT_010748 | AC024047 | 46315138 | 1 | chr17 | NT_010748 | AC003963 | 46479781 | 3 | 22935 | 7064 | 7271 | 37270 |
| S/G/Y/R/B/O |
NT_010748 | AC087298 | 46321232 | 2 | chr17 | NT_010748 | AC002117 | 46354622 | 3 | 0 | 1760 | 0 | 1760 |
| S/G/Y/R/B/O |
NT_010748 | AC087298 | 46321232 | 2 | chr17 | NT_010748 | AC008105 | 46269808 | 1 | 47168 | 4649 | 5786 | 57603 |
| S/G/Y/R/B/O |
NT_010748 | AC002117 | 46354622 | 3 | chr17 | NT_010748 | AC003963 | 46479781 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010748 | AC003963 | 46479781 | 3 | chr17 | NT_010748 | AC003070 | 46527813 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_010748 | AC003963 | 46479781 | 3 | chr17 | NT_010748 | AC024047 | 46315138 | 1 | 22935 | 7064 | 7271 | 37270 |
| S/G/Y/R/B/O |
NT_010748 | AC003070 | 46527813 | 3 | chr17 | NT_010748 | AC091132 | 46655728 | 1 | 0 | 0 | 69970 | 69970 |
| S/G/Y/R/B/O |
NT_010748 | AC003070 | 46527813 | 3 | chr17 | NT_010748 | AC069007 | 46738936 | 1 | 24599 | 4289 | 38489 | 67377 |
| S/G/Y/R/B/O |
NT_010748 | AC091132 | 46655728 | 1 | chr17 | NT_010748 | AC069007 | 46738936 | 1 | 116733 | 6147 | 66155 | 189035 |
| S/G/Y/R/B/O |
NT_010748 | AC091132 | 46655728 | 1 | chr17 | NT_010748 | AC073426 | 46847413 | 1 | 16111 | 0 | 0 | 16111 |
| S/G/Y/R/B/O |
NT_010748 | AC069007 | 46738936 | 1 | chr17 | NT_010748 | AC036218 | 46742514 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010748 | AC069007 | 46738936 | 1 | chr17 | NT_010748 | AC003070 | 46527813 | 3 | 24599 | 4289 | 38489 | 67377 |
| S/G/Y/R/B/O |
NT_010748 | AC069007 | 46738936 | 1 | chr17 | NT_029467 | AC037487 | 66983733 | 1 | 24939 | 0 | 0 | 24939 |
| S/G/Y/R/B/O |
NT_010748 | AC036218 | 46742514 | 1 | chr17 | NT_010748 | AC048388 | 46746673 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010748 | AC036218 | 46742514 | 1 | chr17 | NT_010748 | AC003662 | 46940936 | 3 | 68845 | 13629 | 1245 | 83719 |
| S/G/Y/R/B/O |
NT_010748 | AC036218 | 46742514 | 1 | chr17 | NT_010748 | AC010792 | 47035517 | 3 | 55497 | 10510 | 2521 | 68528 |
| S/G/Y/R/B/O |
NT_010748 | AC036218 | 46742514 | 1 | chr17 | NT_010748 | AC106030 | 46862633 | 2 | 36649 | 8647 | 1245 | 46541 |
| S/G/Y/R/B/O |
NT_010748 | AC036218 | 46742514 | 1 |   |   | AC091628 | 47035517 | 3 | 55471 | 8152 | 2521 | 66144 |
| S/G/Y/R/B/O |
NT_010748 | AC048388 | 46746673 | 1 | chr17 | NT_010748 | AC004703 | 46751113 | 3 | 35053 | 0 | 8207 | 43260 |
| S/G/Y/R/B/O |
NT_010748 | AC048388 | 46746673 | 1 | chr17 | NT_010748 | AC073426 | 46847413 | 1 | 19184 | 1828 | 16302 | 37314 |
| S/G/Y/R/B/O |
NT_010748 | AC048388 | 46746673 | 1 | chr17 | NT_010748 | AC073990 | 47493712 | 1 | 12007 | 0 | 26291 | 38298 |
| S/G/Y/R/B/O |
NT_010748 | AC004703 | 46751113 | 3 | chr17 | NT_010748 | AC073426 | 46847413 | 1 | 62981 | 3217 | 6770 | 72968 |
| S/G/Y/R/B/O |
NT_010748 | AC004703 | 46751113 | 3 | chr17 | NT_010748 | AC106030 | 46862633 | 2 | 22845 | 0 | 0 | 22845 |
| S/G/Y/R/B/O |
NT_010748 | AC073426 | 46847413 | 1 | chr17 | NT_010748 | AC106030 | 46862633 | 2 | 41920 | 0 | 15143 | 57063 |
| S/G/Y/R/B/O |
NT_010748 | AC073426 | 46847413 | 1 | chr17 | NT_010748 | AC048388 | 46746673 | 1 | 19184 | 1828 | 16302 | 37314 |
| S/G/Y/R/B/O |
NT_010748 | AC073426 | 46847413 | 1 | chr17 | NT_010748 | AC091132 | 46655728 | 1 | 16111 | 0 | 0 | 16111 |
| S/G/Y/R/B/O |
NT_010748 | AC106030 | 46862633 | 2 | chr17 | NT_010748 | AC003662 | 46940936 | 3 | 85295 | 0 | 0 | 85295 |
| S/G/Y/R/B/O |
NT_010748 | AC106030 | 46862633 | 2 | chr17 | NT_010748 | AC004703 | 46751113 | 3 | 22845 | 0 | 0 | 22845 |
| S/G/Y/R/B/O |
NT_010748 | AC106030 | 46862633 | 2 | chr17 | NT_010748 | AC036218 | 46742514 | 1 | 36649 | 8647 | 1245 | 46541 |
| S/G/Y/R/B/O |
NT_010748 | AC003662 | 46940936 | 3 | chr17 | NT_010748 | AC010792 | 47035517 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010748 | AC003662 | 46940936 | 3 | chr17 | NT_010748 | AC036218 | 46742514 | 1 | 68845 | 13629 | 1245 | 83719 |
| S/G/Y/R/B/O |
NT_010748 | AC010792 | 47035517 | 3 | chr17 | NT_010748 | AC004139 | 47150923 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010748 | AC010792 | 47035517 | 3 | chr17 | NT_010748 | AC036218 | 46742514 | 1 | 55497 | 10510 | 2521 | 68528 |
| S/G/Y/R/B/O |
NT_010748 | AC010792 | 47035517 | 3 |   |   | AC091628 | 46742514 | 3 | 117303 | 0 | 0 | 117303 |
| S/G/Y/R/B/O |
NT_010748 | AC004139 | 47150923 | 3 | chr17 | NT_010748 | AC005829 | 47275222 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010748 | AC004139 | 47150923 | 3 |   |   | AC091628 | 30845162 | 3 | 81477 | 0 | 0 | 81477 |
| S/G/Y/R/B/O |
NT_010748 | AC005829 | 47275222 | 3 | chr17 | NT_010748 | AC090419 | 47443251 | 1 | 97735 | 4452 | 20096 | 122283 |
| S/G/Y/R/B/O |
NT_010748 | AC005829 | 47275222 | 3 | chr17 | NT_010748 | AC073990 | 47493712 | 1 | 55048 | 0 | 54367 | 109415 |
| S/G/Y/R/B/O |
NT_010748 | AC090419 | 47443251 | 1 | chr17 | NT_010748 | AC073990 | 47493712 | 1 | 7634 | 2344 | 38285 | 48263 |
| S/G/Y/R/B/O |
NT_010748 | AC073990 | 47493712 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010748 | AC073990 | 47493712 | 1 | chr17 | NT_010748 | AC005829 | 47275222 | 3 | 55048 | 0 | 54367 | 109415 |
| S/G/Y/R/B/O |
NT_010748 | AC073990 | 47493712 | 1 | chr17 | NT_033295 | AC046170 | 47681626 | 3 | 14842 | 0 | 2238 | 17080 |
| S/G/Y/R/B/O |
NT_010748 | AC073990 | 47493712 | 1 | chr17 | NT_010748 | AC048388 | 46746673 | 1 | 12007 | 0 | 26291 | 38298 |
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