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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010775 | AC007763 | 67660020 | 1 | chr17 | NT_010775 | AC016704 | 67664089 | 1 | 99771 | 0 | 8681 | 108452 |
| S/G/Y/R/B/O |
NT_010775 | AC007763 | 67660020 | 1 | chr17 | NT_010775 | AC005495 | 67868937 | 3 | 15853 | 0 | 0 | 15853 |
| S/G/Y/R/B/O |
NT_010775 | AC007763 | 67660020 | 1 |   |   | AC015920 | 107621321 | 1 | 80826 | 0 | 0 | 80826 |
| S/G/Y/R/B/O |
NT_010775 | AC016704 | 67664089 | 1 | chr17 | NT_010775 | AC080147 | 67675258 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010775 | AC016704 | 67664089 | 1 |   |   | AC015920 | 107621321 | 1 | 96464 | 1985 | 16484 | 114933 |
| S/G/Y/R/B/O |
NT_010775 | AC080147 | 67675258 | 1 | chr17 | NT_010775 | AC011591 | 67691717 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010775 | AC080147 | 67675258 | 1 | chr17 | NT_010775 | AC002546 | 69013513 | 3 | 103100 | 0 | 0 | 103100 |
| S/G/Y/R/B/O |
NT_010775 | AC080147 | 67675258 | 1 | chr17 | NT_010775 | AC003051 | 69119933 | 3 | 39853 | 0 | 0 | 39853 |
| S/G/Y/R/B/O |
NT_010775 | AC080147 | 67675258 | 1 |   |   | AC002989 | 69013513 | 1 | 47824 | 2274 | 0 | 50098 |
| S/G/Y/R/B/O |
NT_010775 | AC080147 | 67675258 | 1 |   |   | AC015920 | 86065406 | 1 | 22877 | 0 | 1255 | 24132 |
| S/G/Y/R/B/O |
NT_010775 | AC080147 | 67675258 | 1 |   |   | AC069105 | 86065406 | 1 | 38805 | 0 | 0 | 38805 |
| S/G/Y/R/B/O |
NT_010775 | AC080147 | 67675258 | 1 |   |   | AC080178 | 86065406 | 1 | 125680 | 0 | 0 | 125680 |
| S/G/Y/R/B/O |
NT_010775 | AC011591 | 67691717 | 1 | chr17 | NT_010775 | AC005495 | 67868937 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010775 | AC011591 | 67691717 | 1 | chr17 | NT_010775 | AC015844 | 68187649 | 2 | 64433 | 0 | 0 | 64433 |
| S/G/Y/R/B/O |
NT_010775 | AC005495 | 67868937 | 3 | chr17 | NT_010775 | AC005922 | 68052191 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010775 | AC005495 | 67868937 | 3 | chr17 | NT_010775 | AC007763 | 67660020 | 1 | 15853 | 0 | 0 | 15853 |
| S/G/Y/R/B/O |
NT_010775 | AC005922 | 68052191 | 3 | chr17 | NT_010775 | AC015844 | 68187649 | 2 | 5219 | 0 | 0 | 5219 |
| S/G/Y/R/B/O |
NT_010775 | AC015844 | 68187649 | 2 | chr17 | NT_010775 | AC005799 | 68446547 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010775 | AC015844 | 68187649 | 2 | chr17 | NT_010775 | AC011591 | 67691717 | 1 | 64433 | 0 | 0 | 64433 |
| S/G/Y/R/B/O |
NT_010775 | AC005799 | 68446547 | 3 | chr17 | NT_010775 | AC079210 | 68523934 | 1 | 107484 | 0 | 0 | 107484 |
| S/G/Y/R/B/O |
NT_010775 | AC079210 | 68523934 | 1 | chr17 | NT_010775 | AC007780 | 68660489 | 1 | 27726 | 0 | 20531 | 48257 |
| S/G/Y/R/B/O |
NT_010775 | AC007780 | 68660489 | 1 | chr17 | NT_010775 | AC005332 | 68793914 | 3 | 4210 | 0 | 0 | 4210 |
| S/G/Y/R/B/O |
NT_010775 | AC005332 | 68793914 | 3 | chr17 | NT_010775 | AC002546 | 69013513 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010775 | AC002546 | 69013513 | 3 | chr17 | NT_010775 | AC003051 | 69119933 | 3 | 0 | 775 | 0 | 775 |
| S/G/Y/R/B/O |
NT_010775 | AC002546 | 69013513 | 3 | chr17 | NT_010775 | AC080147 | 67675258 | 1 | 103100 | 0 | 0 | 103100 |
| S/G/Y/R/B/O |
NT_010775 | AC002546 | 69013513 | 3 |   |   | AC002989 | 68660489 | 1 | 51219 | 2274 | 0 | 53493 |
| S/G/Y/R/B/O |
NT_010775 | AC002546 | 69013513 | 3 |   |   | AC080178 | 67675258 | 1 | 94468 | 0 | 1332 | 95800 |
| S/G/Y/R/B/O |
NT_010775 | AC003051 | 69119933 | 3 | chr17 | NT_010775 | AC002545 | 69239544 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010775 | AC003051 | 69119933 | 3 | chr17 | NT_010775 | AC080147 | 67675258 | 1 | 39853 | 0 | 0 | 39853 |
| S/G/Y/R/B/O |
NT_010775 | AC003051 | 69119933 | 3 |   |   | AC069105 | 86065406 | 1 | 118816 | 0 | 0 | 118816 |
| S/G/Y/R/B/O |
NT_010775 | AC003051 | 69119933 | 3 |   |   | AC080178 | 67675258 | 1 | 59001 | 0 | 0 | 59001 |
| S/G/Y/R/B/O |
NT_010775 | AC002545 | 69239544 | 3 | chr17 | NT_010775 | AC004756 | 69293255 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010775 | AC002545 | 69239544 | 3 |   |   | AC002532 | 67675258 | 1 | 47472 | 0 | 0 | 47472 |
| S/G/Y/R/B/O |
NT_010775 | AC002545 | 69239544 | 3 |   |   | AC069105 | 86065406 | 1 | 64866 | 0 | 0 | 64866 |
| S/G/Y/R/B/O |
NT_010775 | AC004756 | 69293255 | 3 | chr17 | NT_010775 | AC002538 | 69362989 | 3 | 0 | 1999 | 0 | 1999 |
| S/G/Y/R/B/O |
NT_010775 | AC004756 | 69293255 | 3 |   |   | AC069105 | 69362989 | 1 | 13462 | 0 | 0 | 13462 |
| S/G/Y/R/B/O |
NT_010775 | AC002538 | 69362989 | 3 | chr17 | NT_010775 | AC002539 | 69467782 | 3 | 17891 | 0 | 0 | 17891 |
| S/G/Y/R/B/O |
NT_010775 | AC002539 | 69467782 | 3 | chr17 | NT_010775 | AC004562 | 69537106 | 3 | 68460 | 0 | 0 | 68460 |
| S/G/Y/R/B/O |
NT_010775 | AC002539 | 69467782 | 3 |   |   | AC002989 | 69362989 | 1 | 22464 | 0 | 4228 | 26692 |
| S/G/Y/R/B/O |
NT_010775 | AC004562 | 69537106 | 3 | chr17 | NT_010775 | AC005208 | 69602398 | 3 | 23484 | 0 | 0 | 23484 |
| S/G/Y/R/B/O |
NT_010775 | AC004562 | 69537106 | 3 |   |   | AC002989 | 69467782 | 1 | 38172 | 7466 | 2686 | 48324 |
| S/G/Y/R/B/O |
NT_010775 | AC005208 | 69602398 | 3 | chr17 | NT_010775 | AC005242 | 69702082 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_010775 | AC005242 | 69702082 | 3 | chr17 | NT_010775 | AC058801 | 69860344 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010775 | AC005242 | 69702082 | 3 | chr17 | NT_030163 | AC011990 | 72734519 | 3 | 21641 | 0 | 0 | 21641 |
| S/G/Y/R/B/O |
NT_010775 | AC058801 | 69860344 | 3 | chr17 | NT_010775 | AC005939 | 69900791 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010775 | AC058801 | 69860344 | 3 | chr17 | NT_030163 | AC011990 | 72734519 | 3 | 42397 | 0 | 0 | 42397 |
| S/G/Y/R/B/O |
NT_010775 | AC005939 | 69900791 | 3 | chr17 | NT_010775 | AC011090 | 70078276 | 2 | 32899 | 0 | 0 | 32899 |
| S/G/Y/R/B/O |
NT_010775 | AC005939 | 69900791 | 3 | chr17 | NT_010775 | AC034266 | 70085179 | 1 | 80954 | 6661 | 4480 | 92095 |
| S/G/Y/R/B/O |
NT_010775 | AC011090 | 70078276 | 2 | chr17 | NT_010775 | AC034266 | 70085179 | 1 | 68939 | 6071 | 5592 | 80602 |
| S/G/Y/R/B/O |
NT_010775 | AC011090 | 70078276 | 2 | chr17 | NT_010775 | AC005771 | 70135528 | 3 | 10722 | 0 | 0 | 10722 |
| S/G/Y/R/B/O |
NT_010775 | AC011090 | 70078276 | 2 |   |   | AC023777 | 69900791 | 1 | 23582 | 1510 | 17751 | 42843 |
| S/G/Y/R/B/O |
NT_010775 | AC034266 | 70085179 | 1 | chr17 | NT_010775 | AC005771 | 70135528 | 3 | 10544 | 3917 | 2963 | 17424 |
| S/G/Y/R/B/O |
NT_010775 | AC034266 | 70085179 | 1 | chr17 | NT_010775 | AC005939 | 69900791 | 3 | 80954 | 6661 | 4480 | 92095 |
| S/G/Y/R/B/O |
NT_010775 | AC034266 | 70085179 | 1 |   |   | AC023777 | 7749999 | 1 | 13949 | 1770 | 4004 | 19723 |
| S/G/Y/R/B/O |
NT_010775 | AC005771 | 70135528 | 3 | chr17 | NT_010775 | AC007423 | 70325962 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_010775 | AC005771 | 70135528 | 3 | chr17 | NT_010775 | AC011090 | 70078276 | 2 | 10722 | 0 | 0 | 10722 |
| S/G/Y/R/B/O |
NT_010775 | AC005771 | 70135528 | 3 |   |   | AC023777 | 70078276 | 1 | 118037 | 8296 | 14209 | 140542 |
| S/G/Y/R/B/O |
NT_010775 | AC007423 | 70325962 | 3 | chr17 | NT_010775 | AC005181 | 70385268 | 3 | 0 | 3998 | 0 | 3998 |
| S/G/Y/R/B/O |
NT_010775 | AC005181 | 70385268 | 3 | chr17 | NT_010775 | AC007642 | 70584032 | 3 | 0 | 1997 | 0 | 1997 |
| S/G/Y/R/B/O |
NT_010775 | AC007642 | 70584032 | 3 | chr17 | NT_010775 | AC005273 | 70646043 | 3 | 2002 | 0 | 0 | 2002 |
| S/G/Y/R/B/O |
NT_010775 | AC005273 | 70646043 | 3 | chr17 | NT_010775 | AC005138 | 70766291 | 3 | 0 | 1999 | 0 | 1999 |
| S/G/Y/R/B/O |
NT_010775 | AC005138 | 70766291 | 3 | chr17 | NT_010775 | AC005279 | 70909908 | 3 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_010775 | AC005279 | 70909908 | 3 | chr17 | NT_010775 | AC006473 | 71059337 | 3 | 0 | 1998 | 0 | 1998 |
| S/G/Y/R/B/O |
NT_010775 | AC006473 | 71059337 | 3 |   |   |   |   |   |   |   |   |   |
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