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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033299 | AC109333 | 4422633 | 2 | chr17 | NT_033299 | AC005973 | 4424974 | 2 | 100679 | 0 | 5747 | 106426 |
| S/G/Y/R/B/O |
NT_033299 | AC109333 | 4422633 | 2 | chr17 | NT_033299 | AC004771 | 4925222 | 3 | 36101 | 0 | 0 | 36101 |
| S/G/Y/R/B/O |
NT_033299 | AC109333 | 4422633 | 2 | chr17 | NT_033299 | AC015913 | 4429059 | 1 | 39101 | 13020 | 21854 | 73975 |
| S/G/Y/R/B/O |
NT_033299 | AC109333 | 4422633 | 2 | chr17 | NT_033299 | AC027820 | 4538466 | 1 | 42877 | 0 | 0 | 42877 |
| S/G/Y/R/B/O |
NT_033299 | AC109333 | 4422633 | 2 | chr17 | NT_033299 | AC032038 | 4980983 | 1 | 36009 | 11248 | 2970 | 50227 |
| S/G/Y/R/B/O |
NT_033299 | AC005973 | 4424974 | 2 | chr17 | NT_033299 | AC015913 | 4429059 | 1 | 64150 | 6300 | 13435 | 83885 |
| S/G/Y/R/B/O |
NT_033299 | AC005973 | 4424974 | 2 | chr17 | NT_033299 | AC027820 | 4538466 | 1 | 41091 | 0 | 0 | 41091 |
| S/G/Y/R/B/O |
NT_033299 | AC005973 | 4424974 | 2 | chr17 | NT_033299 | AC032038 | 4980983 | 1 | 11944 | 2551 | 2249 | 16744 |
| S/G/Y/R/B/O |
NT_033299 | AC015913 | 4429059 | 1 | chr17 | NT_033299 | AC087500 | 4476275 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033299 | AC015913 | 4429059 | 1 | chr17 | NT_033299 | AC027820 | 4538466 | 1 | 28831 | 0 | 712 | 29543 |
| S/G/Y/R/B/O |
NT_033299 | AC015913 | 4429059 | 1 | chr17 | NT_033299 | AC032038 | 4980983 | 1 | 12242 | 893 | 6198 | 19333 |
| S/G/Y/R/B/O |
NT_033299 | AC015913 | 4429059 | 1 | chr17 | NT_033299 | AC091153 | 4594671 | 1 | 34295 | 0 | 0 | 34295 |
| S/G/Y/R/B/O |
NT_033299 | AC015913 | 4429059 | 1 | chr17 | NT_033299 | AC109333 | 4422633 | 2 | 39101 | 13020 | 21854 | 73975 |
| S/G/Y/R/B/O |
NT_033299 | AC087500 | 4476275 | 1 | chr17 | NT_033299 | AC027820 | 4538466 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033299 | AC087500 | 4476275 | 1 | chr17 | NT_033299 | AC012146 | 4982751 | 1 | 18502 | 0 | 3097 | 21599 |
| S/G/Y/R/B/O |
NT_033299 | AC087500 | 4476275 | 1 | chr17 | NT_033299 | AC025233 | 5028168 | 1 | 75894 | 3362 | 12346 | 91602 |
| S/G/Y/R/B/O |
NT_033299 | AC087500 | 4476275 | 1 | chr17 | NT_033299 | AC074339 | 5026853 | 1 | 19799 | 3535 | 13006 | 36340 |
| S/G/Y/R/B/O |
NT_033299 | AC087500 | 4476275 | 1 |   |   | AC015727 | 4982751 | 1 | 101319 | 0 | 27419 | 128738 |
| S/G/Y/R/B/O |
NT_033299 | AC027820 | 4538466 | 1 | chr17 | NT_033299 | AC091153 | 4594671 | 1 | 33134 | 2015 | 77714 | 112863 |
| S/G/Y/R/B/O |
NT_033299 | AC027820 | 4538466 | 1 | chr17 | NT_033299 | AC005973 | 4424974 | 2 | 41091 | 0 | 0 | 41091 |
| S/G/Y/R/B/O |
NT_033299 | AC027820 | 4538466 | 1 | chr17 | NT_033299 | AC015913 | 4429059 | 1 | 28831 | 0 | 712 | 29543 |
| S/G/Y/R/B/O |
NT_033299 | AC027820 | 4538466 | 1 | chr17 | NT_033299 | AC109333 | 4422633 | 2 | 42877 | 0 | 0 | 42877 |
| S/G/Y/R/B/O |
NT_033299 | AC091153 | 4594671 | 1 | chr17 | NT_033299 | AC022285 | 4707427 | 1 | 28693 | 1118 | 34398 | 64209 |
| S/G/Y/R/B/O |
NT_033299 | AC091153 | 4594671 | 1 | chr17 | NT_033299 | AC015913 | 4429059 | 1 | 34295 | 0 | 0 | 34295 |
| S/G/Y/R/B/O |
NT_033299 | AC022285 | 4707427 | 1 | chr17 | NT_033299 | AC004771 | 4925222 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033299 | AC022285 | 4707427 | 1 | chr17 | NT_033294 | AC025590 | 4194203 | 1 | 24926 | 0 | 0 | 24926 |
| S/G/Y/R/B/O |
NT_033299 | AC004771 | 4925222 | 3 | chr17 | NT_033299 | AC032038 | 4980983 | 1 | 41246 | 14463 | 4999 | 60708 |
| S/G/Y/R/B/O |
NT_033299 | AC004771 | 4925222 | 3 | chr17 | NT_033299 | AC012146 | 4982751 | 1 | 12389 | 2282 | 0 | 14671 |
| S/G/Y/R/B/O |
NT_033299 | AC004771 | 4925222 | 3 | chr17 | NT_033299 | AC109333 | 4422633 | 2 | 36101 | 0 | 0 | 36101 |
| S/G/Y/R/B/O |
NT_033299 | AC032038 | 4980983 | 1 | chr17 | NT_033299 | AC012146 | 4982751 | 1 | 10969 | 8760 | 3953 | 23682 |
| S/G/Y/R/B/O |
NT_033299 | AC032038 | 4980983 | 1 | chr17 | NT_033299 | AC005973 | 4424974 | 2 | 11944 | 2551 | 2249 | 16744 |
| S/G/Y/R/B/O |
NT_033299 | AC032038 | 4980983 | 1 | chr17 | NT_033299 | AC015913 | 4429059 | 1 | 12242 | 893 | 6198 | 19333 |
| S/G/Y/R/B/O |
NT_033299 | AC032038 | 4980983 | 1 | chr17 | NT_033299 | AC109333 | 4422633 | 2 | 36009 | 11248 | 2970 | 50227 |
| S/G/Y/R/B/O |
NT_033299 | AC012146 | 4982751 | 1 | chr17 | NT_033299 | AC074339 | 5026853 | 1 | 32976 | 10777 | 50666 | 94419 |
| S/G/Y/R/B/O |
NT_033299 | AC012146 | 4982751 | 1 | chr17 | NT_033299 | AC004771 | 4925222 | 3 | 12389 | 2282 | 0 | 14671 |
| S/G/Y/R/B/O |
NT_033299 | AC012146 | 4982751 | 1 | chr17 | NT_033299 | AC008058 | 5267476 | 1 | 19217 | 0 | 12794 | 32011 |
| S/G/Y/R/B/O |
NT_033299 | AC012146 | 4982751 | 1 | chr17 | NT_033299 | AC087500 | 4476275 | 1 | 18502 | 0 | 3097 | 21599 |
| S/G/Y/R/B/O |
NT_033299 | AC074339 | 5026853 | 1 | chr17 | NT_033299 | AC025233 | 5028168 | 1 | 13497 | 3553 | 10332 | 27382 |
| S/G/Y/R/B/O |
NT_033299 | AC074339 | 5026853 | 1 | chr17 | NT_033299 | AC087500 | 4476275 | 1 | 19799 | 3535 | 13006 | 36340 |
| S/G/Y/R/B/O |
NT_033299 | AC074339 | 5026853 | 1 |   |   | AC015727 | 4982751 | 1 | 13569 | 0 | 2046 | 15615 |
| S/G/Y/R/B/O |
NT_033299 | AC025233 | 5028168 | 1 | chr17 | NT_033299 | AC008058 | 5267476 | 1 | 3726 | 0 | 16724 | 20450 |
| S/G/Y/R/B/O |
NT_033299 | AC025233 | 5028168 | 1 | chr17 | NT_033299 | AC087500 | 4476275 | 1 | 75894 | 3362 | 12346 | 91602 |
| S/G/Y/R/B/O |
NT_033299 | AC025233 | 5028168 | 1 |   |   | AC015727 | 4982751 | 1 | 45028 | 1647 | 31477 | 78152 |
| S/G/Y/R/B/O |
NT_033299 | AC008058 | 5267476 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033299 | AC008058 | 5267476 | 1 | chr17 | NT_033299 | AC012146 | 4982751 | 1 | 19217 | 0 | 12794 | 32011 |
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