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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010808 | AC015917 | 26132696 | 1 | chr17 | NT_010808 | AP000878 | 26138115 | 1 | 0 | 0 | 201 | 201 |
| S/G/Y/R/B/O |
NT_010808 | AC015917 | 26132696 | 1 | chr17 | NT_010808 | AC002094 | 27401751 | 3 | 11641 | 0 | 0 | 11641 |
| S/G/Y/R/B/O |
NT_010808 | AC015917 | 26132696 | 1 | chr17 | NT_010808 | AC005726 | 28114391 | 3 | 40401 | 0 | 0 | 40401 |
| S/G/Y/R/B/O |
NT_010808 | AC015917 | 26132696 | 1 |   |   | Y11740 | 26138115 | 3 | 12246 | 0 | 0 | 12246 |
| S/G/Y/R/B/O |
NT_010808 | AP000878 | 26138115 | 1 | chr17 | NT_010808 | AC010761 | 26143694 | 1 | 7565 | 5276 | 2688 | 15529 |
| S/G/Y/R/B/O |
NT_010808 | AP000878 | 26138115 | 1 | chr17 | NT_010808 | AC005726 | 28114391 | 3 | 64539 | 14326 | 29077 | 107942 |
| S/G/Y/R/B/O |
NT_010808 | AC010761 | 26143694 | 1 | chr17 | NT_010808 | AC021453 | 26179007 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010808 | AC021453 | 26179007 | 1 | chr17 | NT_010808 | AC068025 | 26212261 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010808 | AC021453 | 26179007 | 1 | chr17 | NT_010808 | AC061975 | 27343743 | 2 | 14522 | 906 | 0 | 15428 |
| S/G/Y/R/B/O |
NT_010808 | AC068025 | 26212261 | 1 | chr17 | NT_010808 | AC026249 | 26237652 | 1 | 0 | 0 | 3994 | 3994 |
| S/G/Y/R/B/O |
NT_010808 | AC068025 | 26212261 | 1 | chr17 | NT_010808 | AC005412 | 27884838 | 3 | 92705 | 0 | 5652 | 98357 |
| S/G/Y/R/B/O |
NT_010808 | AC068025 | 26212261 | 1 | chr17 | NT_010808 | AC068588 | 27631445 | 1 | 21633 | 0 | 13251 | 34884 |
| S/G/Y/R/B/O |
NT_010808 | AC026249 | 26237652 | 1 | chr17 | NT_010808 | AC104564 | 26264352 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010808 | AC104564 | 26264352 | 1 | chr17 | NT_010808 | AC015867 | 26312578 | 1 | 88384 | 6225 | 5925 | 100534 |
| S/G/Y/R/B/O |
NT_010808 | AC104564 | 26264352 | 1 | chr17 | NT_010808 | AC010189 | 26519968 | 1 | 16301 | 0 | 20884 | 37185 |
| S/G/Y/R/B/O |
NT_010808 | AC104564 | 26264352 | 1 | chr17 | NT_010808 | AC090698 | 27578182 | 1 | 19071 | 0 | 21192 | 40263 |
| S/G/Y/R/B/O |
NT_010808 | AC015867 | 26312578 | 1 | chr17 | NT_010808 | AC015688 | 26312739 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010808 | AC015867 | 26312578 | 1 | chr17 | NT_010808 | AC010189 | 26519968 | 1 | 72344 | 4479 | 8705 | 85528 |
| S/G/Y/R/B/O |
NT_010808 | AC015867 | 26312578 | 1 | chr17 | NT_010808 | AC068588 | 27631445 | 1 | 22746 | 7616 | 358 | 30720 |
| S/G/Y/R/B/O |
NT_010808 | AC015867 | 26312578 | 1 | chr17 | NT_010808 | AC090698 | 27578182 | 1 | 41585 | 9066 | 14533 | 65184 |
| S/G/Y/R/B/O |
NT_010808 | AC015688 | 26312739 | 1 | chr17 | NT_010808 | AC026254 | 26363754 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010808 | AC015688 | 26312739 | 1 | chr17 | NT_010808 | AC069366 | 26668848 | 1 | 45064 | 0 | 0 | 45064 |
| S/G/Y/R/B/O |
NT_010808 | AC015688 | 26312739 | 1 | chr17 | NT_010808 | AL354047 | 26905981 | 3 | 10588 | 0 | 0 | 10588 |
| S/G/Y/R/B/O |
NT_010808 | AC015688 | 26312739 | 1 |   |   | AC068106 | 186882538 | 1 | 131044 | 2085 | 69 | 133198 |
| S/G/Y/R/B/O |
NT_010808 | AC026254 | 26363754 | 1 | chr17 | NT_010808 | AC010189 | 26519968 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010808 | AC026254 | 26363754 | 1 | chr17 | NT_010808 | AC021976 | 26569773 | 1 | 74354 | 0 | 0 | 74354 |
| S/G/Y/R/B/O |
NT_010808 | AC026254 | 26363754 | 1 | chr17 | NT_010808 | AC090615 | 26608217 | 1 | 63133 | 0 | 0 | 63133 |
| S/G/Y/R/B/O |
NT_010808 | AC010189 | 26519968 | 1 | chr17 | NT_010808 | AC021976 | 26569773 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010808 | AC010189 | 26519968 | 1 | chr17 | NT_010808 | AC015867 | 26312578 | 1 | 72344 | 4479 | 8705 | 85528 |
| S/G/Y/R/B/O |
NT_010808 | AC010189 | 26519968 | 1 | chr17 | NT_010808 | AC068588 | 27631445 | 1 | 34045 | 2163 | 19236 | 55444 |
| S/G/Y/R/B/O |
NT_010808 | AC010189 | 26519968 | 1 | chr17 | NT_010808 | AC090698 | 27578182 | 1 | 49482 | 2140 | 22569 | 74191 |
| S/G/Y/R/B/O |
NT_010808 | AC010189 | 26519968 | 1 | chr17 | NT_010808 | AC104564 | 26264352 | 1 | 16301 | 0 | 20884 | 37185 |
| S/G/Y/R/B/O |
NT_010808 | AC021976 | 26569773 | 1 | chr17 | NT_010808 | AC090615 | 26608217 | 1 | 51946 | 0 | 44322 | 96268 |
| S/G/Y/R/B/O |
NT_010808 | AC021976 | 26569773 | 1 | chr17 | NT_010808 | AC026254 | 26363754 | 1 | 74354 | 0 | 0 | 74354 |
| S/G/Y/R/B/O |
NT_010808 | AC090615 | 26608217 | 1 | chr17 | NT_010808 | AC069366 | 26668848 | 1 | 33700 | 0 | 0 | 33700 |
| S/G/Y/R/B/O |
NT_010808 | AC090615 | 26608217 | 1 | chr17 | NT_010808 | AC026254 | 26363754 | 1 | 63133 | 0 | 0 | 63133 |
| S/G/Y/R/B/O |
NT_010808 | AC069366 | 26668848 | 1 | chr17 | NT_010808 | AL354047 | 26905981 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010808 | AC069366 | 26668848 | 1 | chr17 | NT_010808 | AC015688 | 26312739 | 1 | 45064 | 0 | 0 | 45064 |
| S/G/Y/R/B/O |
NT_010808 | AC069366 | 26668848 | 1 |   |   | AC068106 | 26569773 | 1 | 80867 | 0 | 0 | 80867 |
| S/G/Y/R/B/O |
NT_010808 | AL354047 | 26905981 | 3 | chr17 | NT_010808 | AC005697 | 26984772 | 3 | 61529 | 0 | 0 | 61529 |
| S/G/Y/R/B/O |
NT_010808 | AL354047 | 26905981 | 3 | chr17 | NT_010808 | AC015688 | 26312739 | 1 | 10588 | 0 | 0 | 10588 |
| S/G/Y/R/B/O |
NT_010808 | AC005697 | 26984772 | 3 | chr17 | NT_010808 | AC090287 | 27157293 | 3 | 0 | 1982 | 0 | 1982 |
| S/G/Y/R/B/O |
NT_010808 | AC090287 | 27157293 | 3 | chr17 | NT_010808 | AC061975 | 27343743 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010808 | AC061975 | 27343743 | 2 | chr17 | NT_010808 | AC002094 | 27401751 | 3 | 84094 | 0 | 0 | 84094 |
| S/G/Y/R/B/O |
NT_010808 | AC061975 | 27343743 | 2 | chr17 | NT_010808 | AC021453 | 26179007 | 1 | 14522 | 906 | 0 | 15428 |
| S/G/Y/R/B/O |
NT_010808 | AC061975 | 27343743 | 2 |   |   | AB062274 | 26179007 | 3 | 11355 | 0 | 0 | 11355 |
| S/G/Y/R/B/O |
NT_010808 | AC002094 | 27401751 | 3 | chr17 | NT_010808 | AC090698 | 27578182 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010808 | AC002094 | 27401751 | 3 | chr17 | NT_010808 | AC015917 | 26132696 | 1 | 11641 | 0 | 0 | 11641 |
| S/G/Y/R/B/O |
NT_010808 | AC002094 | 27401751 | 3 |   |   | AY065346 | 27343743 | 3 | 15255 | 0 | 0 | 15255 |
| S/G/Y/R/B/O |
NT_010808 | AC090698 | 27578182 | 1 | chr17 | NT_010808 | AC068588 | 27631445 | 1 | 60804 | 0 | 0 | 60804 |
| S/G/Y/R/B/O |
NT_010808 | AC090698 | 27578182 | 1 | chr17 | NT_010808 | AC010189 | 26519968 | 1 | 49482 | 2140 | 22569 | 74191 |
| S/G/Y/R/B/O |
NT_010808 | AC090698 | 27578182 | 1 | chr17 | NT_010808 | AC015867 | 26312578 | 1 | 41585 | 9066 | 14533 | 65184 |
| S/G/Y/R/B/O |
NT_010808 | AC090698 | 27578182 | 1 | chr17 | NT_010808 | AC104564 | 26264352 | 1 | 19071 | 0 | 21192 | 40263 |
| S/G/Y/R/B/O |
NT_010808 | AC068588 | 27631445 | 1 | chr17 | NT_010808 | AC005412 | 27884838 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010808 | AC068588 | 27631445 | 1 | chr17 | NT_010808 | AC010189 | 26519968 | 1 | 34045 | 2163 | 19236 | 55444 |
| S/G/Y/R/B/O |
NT_010808 | AC068588 | 27631445 | 1 | chr17 | NT_010808 | AC015867 | 26312578 | 1 | 22746 | 7616 | 358 | 30720 |
| S/G/Y/R/B/O |
NT_010808 | AC068588 | 27631445 | 1 | chr17 | NT_010808 | AC068025 | 26212261 | 1 | 21633 | 0 | 13251 | 34884 |
| S/G/Y/R/B/O |
NT_010808 | AC005412 | 27884838 | 3 | chr17 | NT_010808 | AC024619 | 28066348 | 1 | 5254 | 0 | 0 | 5254 |
| S/G/Y/R/B/O |
NT_010808 | AC005412 | 27884838 | 3 | chr17 | NT_010808 | AC068025 | 26212261 | 1 | 92705 | 0 | 5652 | 98357 |
| S/G/Y/R/B/O |
NT_010808 | AC005412 | 27884838 | 3 |   |   | AC027810 | 28066348 | 1 | 29117 | 1549 | 11851 | 42517 |
| S/G/Y/R/B/O |
NT_010808 | AC024619 | 28066348 | 1 | chr17 | NT_010808 | AC005726 | 28114391 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010808 | AC024619 | 28066348 | 1 | chr17 | NT_010808 | AC024267 | 28449747 | 1 | 14988 | 0 | 0 | 14988 |
| S/G/Y/R/B/O |
NT_010808 | AC024619 | 28066348 | 1 |   |   | AC027810 | 28449747 | 1 | 106886 | 0 | 1068 | 107954 |
| S/G/Y/R/B/O |
NT_010808 | AC005726 | 28114391 | 3 | chr17 | NT_010808 | AC024267 | 28449747 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010808 | AC005726 | 28114391 | 3 | chr17 | NT_010808 | AC015917 | 26132696 | 1 | 40401 | 0 | 0 | 40401 |
| S/G/Y/R/B/O |
NT_010808 | AC005726 | 28114391 | 3 | chr17 | NT_010808 | AP000878 | 26138115 | 1 | 64539 | 14326 | 29077 | 107942 |
| S/G/Y/R/B/O |
NT_010808 | AC005726 | 28114391 | 3 |   |   | Y11740 | 26138115 | 3 | 13379 | 0 | 0 | 13379 |
| S/G/Y/R/B/O |
NT_010808 | AC024267 | 28449747 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010808 | AC024267 | 28449747 | 1 | chr17 | NT_010808 | AC024619 | 28066348 | 1 | 14988 | 0 | 0 | 14988 |
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