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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010249 | AC073419 | 78927927 | 1 | chr15 | NT_010249 | AC012291 | 78930297 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010249 | AC073419 | 78927927 | 1 | chr15 | NT_010249 | AC022684 | 79117941 | 2 | 63890 | 6314 | 32762 | 102966 |
| S/G/Y/R/B/O |
NT_010249 | AC073419 | 78927927 | 1 | chr15 | NT_010249 | AC027807 | 79282820 | 2 | 110410 | 13422 | 50545 | 174377 |
| S/G/Y/R/B/O |
NT_010249 | AC073419 | 78927927 | 1 |   |   | AC027605 | 79117941 | 1 | 46567 | 7108 | 15840 | 69515 |
| S/G/Y/R/B/O |
NT_010249 | AC012291 | 78930297 | 1 | chr15 | NT_010249 | AC016771 | 79055479 | 1 | 19450 | 0 | 11672 | 31122 |
| S/G/Y/R/B/O |
NT_010249 | AC012291 | 78930297 | 1 | chr15 | NT_010249 | AC087732 | 79057900 | 1 | 19908 | 0 | 0 | 19908 |
| S/G/Y/R/B/O |
NT_010249 | AC012291 | 78930297 | 1 |   |   | AC010757 | 79282820 | 1 | 129320 | 4793 | 0 | 134113 |
| S/G/Y/R/B/O |
NT_010249 | AC016771 | 79055479 | 1 | chr15 | NT_010249 | AC087732 | 79057900 | 1 | 75240 | 5997 | 52597 | 133834 |
| S/G/Y/R/B/O |
NT_010249 | AC016771 | 79055479 | 1 | chr15 | NT_010249 | AC048382 | 79721741 | 1 | 79663 | 4560 | 8100 | 92323 |
| S/G/Y/R/B/O |
NT_010249 | AC016771 | 79055479 | 1 |   |   | AC010757 | 79057900 | 1 | 16631 | 3963 | 13555 | 34149 |
| S/G/Y/R/B/O |
NT_010249 | AC087732 | 79057900 | 1 | chr15 | NT_010249 | AC022684 | 79117941 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010249 | AC087732 | 79057900 | 1 | chr15 | NT_010249 | AC012291 | 78930297 | 1 | 19908 | 0 | 0 | 19908 |
| S/G/Y/R/B/O |
NT_010249 | AC087732 | 79057900 | 1 | chr15 | NT_010249 | AC048382 | 79721741 | 1 | 90908 | 0 | 2636 | 93544 |
| S/G/Y/R/B/O |
NT_010249 | AC087732 | 79057900 | 1 |   |   | AC010757 | 79057900 | 1 | 31435 | 0 | 14334 | 45769 |
| S/G/Y/R/B/O |
NT_010249 | AC087732 | 79057900 | 1 |   |   | AF244812 | 79721741 | 3 | 13023 | 0 | 0 | 13023 |
| S/G/Y/R/B/O |
NT_010249 | AC022684 | 79117941 | 2 | chr15 | NT_010249 | AC027807 | 79282820 | 2 | 110916 | 0 | 0 | 110916 |
| S/G/Y/R/B/O |
NT_010249 | AC022684 | 79117941 | 2 | chr15 | NT_010249 | AC073419 | 78927927 | 1 | 63890 | 6314 | 32762 | 102966 |
| S/G/Y/R/B/O |
NT_010249 | AC027807 | 79282820 | 2 | chr15 | NT_010249 | AC103965 | 79353231 | 3 | 17881 | 0 | 0 | 17881 |
| S/G/Y/R/B/O |
NT_010249 | AC027807 | 79282820 | 2 | chr15 | NT_010249 | AC073419 | 78927927 | 1 | 110410 | 13422 | 50545 | 174377 |
| S/G/Y/R/B/O |
NT_010249 | AC027807 | 79282820 | 2 |   |   | AC027605 | 79117941 | 1 | 73210 | 0 | 0 | 73210 |
| S/G/Y/R/B/O |
NT_010249 | AC103965 | 79353231 | 3 | chr15 | NT_010249 | AC010725 | 79465215 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010249 | AC103965 | 79353231 | 3 |   |   | AC027605 | 79353231 | 1 | 68892 | 0 | 0 | 68892 |
| S/G/Y/R/B/O |
NT_010249 | AC103965 | 79353231 | 3 |   |   | AC073891 | 79282820 | 1 | 32951 | 1521 | 8153 | 42625 |
| S/G/Y/R/B/O |
NT_010249 | AC103965 | 79353231 | 3 |   |   | AC090910 | 79282820 | 1 | 30644 | 0 | 0 | 30644 |
| S/G/Y/R/B/O |
NT_010249 | AC010725 | 79465215 | 3 | chr15 | NT_010249 | AC048382 | 79721741 | 1 | 52994 | 0 | 0 | 52994 |
| S/G/Y/R/B/O |
NT_010249 | AC010725 | 79465215 | 3 | chr15 | NT_010249 | AC005630 | 79792052 | 3 | 133470 | 0 | 0 | 133470 |
| S/G/Y/R/B/O |
NT_010249 | AC010725 | 79465215 | 3 |   |   | AC073891 | 77510703 | 1 | 91356 | 4433 | 35453 | 131242 |
| S/G/Y/R/B/O |
NT_010249 | AC010725 | 79465215 | 3 |   |   | AC090910 | 98059568 | 1 | 36440 | 4400 | 33482 | 74322 |
| S/G/Y/R/B/O |
NT_010249 | AC048382 | 79721741 | 1 | chr15 | NT_010249 | AC005630 | 79792052 | 3 | 56220 | 0 | 0 | 56220 |
| S/G/Y/R/B/O |
NT_010249 | AC048382 | 79721741 | 1 | chr15 | NT_010249 | AC016771 | 79055479 | 1 | 79663 | 4560 | 8100 | 92323 |
| S/G/Y/R/B/O |
NT_010249 | AC048382 | 79721741 | 1 | chr15 | NT_010249 | AC087732 | 79057900 | 1 | 90908 | 0 | 2636 | 93544 |
| S/G/Y/R/B/O |
NT_010249 | AC048382 | 79721741 | 1 |   |   | AF244812 | 79057900 | 3 | 13024 | 0 | 0 | 13024 |
| S/G/Y/R/B/O |
NT_010249 | AC005630 | 79792052 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010249 | AC005630 | 79792052 | 3 | chr15 | NT_010249 | AC010725 | 79465215 | 3 | 133470 | 0 | 0 | 133470 |
| S/G/Y/R/B/O |
NT_010249 | AC005630 | 79792052 | 3 |   |   | AC073891 | 77510703 | 1 | 71522 | 4423 | 26691 | 102636 |
| S/G/Y/R/B/O |
NT_010249 | AC005630 | 79792052 | 3 |   |   | AC090910 | 98059568 | 1 | 15248 | 4423 | 37288 | 56959 |
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