Chromosome 15 - Clone Overlaps

Chromosome 15 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_010362	NT_024668	NT_033275	NT_033278	NT_033279	NT_010346	NT_010178	NT_026446
NT_030829	NT_024683	NT_010280	NT_024666	NT_010221	NT_010363	NT_024680	NT_033266
NT_010344	NT_030828	NT_010194	NT_010289	NT_010342	NT_010351	NT_024653	NT_010265
NT_033272	NT_010222	NT_010332	NT_033270	NT_010376	NT_010298	NT_010374	NT_024703
NT_024654	NT_029450	NT_019601	NT_010249	NT_033267	NT_010356	NT_010343	NT_024674
NT_033271	NT_024670	NT_033269	NT_033276	NT_033277	NT_010352	NT_024651	NT_010274

NT_010289

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_010289	AC019146	49338239	1	chr15	NT_010289	AC012344	49402293	1	24215	3080	6088	33383
S/G/Y/R/B/O	NT_010289	AC012344	49402293	1	chr15	NT_010289	AC025041	49405293	3	0	0	0	0
S/G/Y/R/B/O	NT_010289	AC012344	49402293	1	chr15	NT_010289	AC009560	56978500	3	104705	2056	0	106761
S/G/Y/R/B/O	NT_010289	AC025041	49405293	3	chr15	NT_010289	AC044791	49578680	3	0	0	0	0
S/G/Y/R/B/O	NT_010289	AC025041	49405293	3			AC026592	41570079	1	68588	11668	1154	81410
S/G/Y/R/B/O	NT_010289	AC044791	49578680	3	chr15	NT_010289	AC068712	49725991	3	128850	0	0	128850
S/G/Y/R/B/O	NT_010289	AC044791	49578680	3			AC026592	41570079	1	100581	1788	0	102369
S/G/Y/R/B/O	NT_010289	AC044791	49578680	3			AC032018	41570079	1	106533	14638	7072	128243
S/G/Y/R/B/O	NT_010289	AC068712	49725991	3	chr15	NT_010289	AC087832	49773536	3	19323	0	0	19323
S/G/Y/R/B/O	NT_010289	AC068712	49725991	3			AC026592	49725991	1	57361	1787	0	59148
S/G/Y/R/B/O	NT_010289	AC068712	49725991	3			AC032018	49725991	1	99664	5845	8105	113614
S/G/Y/R/B/O	NT_010289	AC087832	49773536	3	chr15	NT_010289	AC066614	49911995	3	49308	0	0	49308
S/G/Y/R/B/O	NT_010289	AC087832	49773536	3			AC026598	49773536	1	40668	0	0	40668
S/G/Y/R/B/O	NT_010289	AC066614	49911995	3	chr15	NT_010289	AC024061	50039313	3	26788	0	0	26788
S/G/Y/R/B/O	NT_010289	AC066614	49911995	3			AC026598	50039313	1	125806	2183	0	127989
S/G/Y/R/B/O	NT_010289	AC024061	50039313	3	chr15	NT_010289	AC066611	50169537	3	13472	0	0	13472
S/G/Y/R/B/O	NT_010289	AC024061	50039313	3			AC021700	49773536	2	16453	0	0	16453
S/G/Y/R/B/O	NT_010289	AC066611	50169537	3	chr15	NT_010289	AC084759	50340419	3	0	0	0	0
S/G/Y/R/B/O	NT_010289	AC066611	50169537	3			AC021700	49911995	2	180417	0	0	180417
S/G/Y/R/B/O	NT_010289	AC066611	50169537	3			AC079904	50039313	1	16295	0	0	16295
S/G/Y/R/B/O	NT_010289	AC066611	50169537	3			AC090463	50039313	1	153589	2488	1554	157631
S/G/Y/R/B/O	NT_010289	AC084759	50340419	3	chr15	NT_010289	AC010867	50510860	3	11100	0	0	11100
S/G/Y/R/B/O	NT_010289	AC084759	50340419	3			AC079904	50510860	1	173454	0	0	173454
S/G/Y/R/B/O	NT_010289	AC010867	50510860	3	chr15	NT_010289	AC022302	50721390	3	0	0	0	0
S/G/Y/R/B/O	NT_010289	AC010867	50510860	3			AC079904	50510860	1	21642	0	0	21642
S/G/Y/R/B/O	NT_010289	AC022302	50721390	3	chr15	NT_010289	AC034103	50897519	3	20897	0	0	20897
S/G/Y/R/B/O	NT_010289	AC022302	50721390	3			AC046184	50897519	1	56310	2994	1110	60414
S/G/Y/R/B/O	NT_010289	AC034103	50897519	3	chr15	NT_010289	AC068711	51042019	3	49016	0	0	49016
S/G/Y/R/B/O	NT_010289	AC034103	50897519	3			AC046184	50721390	1	11693	2989	7920	22602
S/G/Y/R/B/O	NT_010289	AC034103	50897519	3			AC074062	51042019	2	150057	0	0	150057
S/G/Y/R/B/O	NT_010289	AC068711	51042019	3	chr15	NT_010289	AC009559	51147824	3	61818	0	0	61818
S/G/Y/R/B/O	NT_010289	AC009559	51147824	3	chr15	NT_010289	AC073881	51248596	3	18141	0	0	18141
S/G/Y/R/B/O	NT_010289	AC073881	51248596	3	chr15	NT_010289	AC068723	51355914	3	26796	0	0	26796
S/G/Y/R/B/O	NT_010289	AC073881	51248596	3			AC026628	51147824	1	93439	2546	15433	111418
S/G/Y/R/B/O	NT_010289	AC068723	51355914	3	chr15	NT_010289	AC025272	51495226	3	24036	0	0	24036
S/G/Y/R/B/O	NT_010289	AC068723	51355914	3			AC026628	51495226	1	71788	2186	0	73974
S/G/Y/R/B/O	NT_010289	AC068723	51355914	3			AC074100	51248596	1	33167	2870	1464	37501
S/G/Y/R/B/O	NT_010289	AC068723	51355914	3			AC084119	51248596	1	157360	0	315	157675
S/G/Y/R/B/O	NT_010289	AC025272	51495226	3	chr15	NT_010289	AC011912	51641905	3	53809	0	0	53809
S/G/Y/R/B/O	NT_010289	AC025272	51495226	3			AC074100	51355914	1	55689	7288	56480	119457
S/G/Y/R/B/O	NT_010289	AC011912	51641905	3	chr15	NT_010289	AC018926	51763249	3	22422	0	0	22422
S/G/Y/R/B/O	NT_010289	AC011912	51641905	3			AC074100	51495226	1	14177	2619	0	16796
S/G/Y/R/B/O	NT_010289	AC011912	51641905	3			AF443871	51495226	3	47434	0	0	47434
S/G/Y/R/B/O	NT_010289	AC018926	51763249	3	chr15	NT_010289	AC013355	51898820	3	53466	0	0	53466
S/G/Y/R/B/O	NT_010289	AC018926	51763249	3			AF443871	51898820	3	43627	0	0	43627
S/G/Y/R/B/O	NT_010289	AC013355	51898820	3	chr15	NT_010289	AC022083	51996319	3	47815	0	0	47815
S/G/Y/R/B/O	NT_010289	AC022083	51996319	3	chr15	NT_010289	AC012378	52062572	3	11633	0	0	11633
S/G/Y/R/B/O	NT_010289	AC022083	51996319	3			AC012674	52062572	1	15638	0	0	15638
S/G/Y/R/B/O	NT_010289	AC012378	52062572	3	chr15	NT_010289	AC009997	52250214	3	32474	0	0	32474
S/G/Y/R/B/O	NT_010289	AC012378	52062572	3			AC012674	52250214	1	93327	0	50530	143857
S/G/Y/R/B/O	NT_010289	AC009997	52250214	3	chr15	NT_010289	AC039057	52418053	3	39506	0	0	39506
S/G/Y/R/B/O	NT_010289	AC009997	52250214	3			AC073122	52418053	1	15514	0	0	15514
S/G/Y/R/B/O	NT_010289	AC039057	52418053	3	chr15	NT_010289	AC084783	52553219	3	0	0	0	0
S/G/Y/R/B/O	NT_010289	AC039057	52418053	3			AC036163	52250214	1	104784	9455	0	114239
S/G/Y/R/B/O	NT_010289	AC039057	52418053	3			AC073122	52250214	1	108927	4201	25603	138731
S/G/Y/R/B/O	NT_010289	AC084783	52553219	3	chr15	NT_010289	AC068726	52712552	3	0	0	0	0
S/G/Y/R/B/O	NT_010289	AC084783	52553219	3			AC036163	52250214	1	56184	0	4217	60401
S/G/Y/R/B/O	NT_010289	AC084783	52553219	3			AC080035	52250214	2	25500	0	0	25500
S/G/Y/R/B/O	NT_010289	AC068726	52712552	3	chr15	NT_010289	AC084782	52894187	3	96088	0	0	96088
S/G/Y/R/B/O	NT_010289	AC068726	52712552	3			AC080035	52250214	2	159799	0	0	159799
S/G/Y/R/B/O	NT_010289	AC068726	52712552	3			AC083922	52250214	1	137183	0	0	137183
S/G/Y/R/B/O	NT_010289	AC084782	52894187	3	chr15	NT_010289	AC068713	52975961	3	45764	0	0	45764
S/G/Y/R/B/O	NT_010289	AC084782	52894187	3			AC067809	52894187	1	46374	7722	4205	58301
S/G/Y/R/B/O	NT_010289	AC084782	52894187	3			AC080035	52712552	2	67562	0	0	67562
S/G/Y/R/B/O	NT_010289	AC084782	52894187	3			AC083922	52712552	1	71318	0	0	71318
S/G/Y/R/B/O	NT_010289	AC068713	52975961	3	chr15	NT_010289	AC090518	53062501	3	24721	0	0	24721
S/G/Y/R/B/O	NT_010289	AC068713	52975961	3			AC067809	84513965	1	84154	15577	10069	109800
S/G/Y/R/B/O	NT_010289	AC068713	52975961	3			AC067885	84513965	1	17528	20290	14490	52308
S/G/Y/R/B/O	NT_010289	AC090518	53062501	3	chr15	NT_010289	AC090517	53226424	3	26893	0	0	26893
S/G/Y/R/B/O	NT_010289	AC090518	53062501	3			AC067809	53062501	1	22972	4061	6960	33993
S/G/Y/R/B/O	NT_010289	AC090517	53226424	3	chr15	NT_010289	AC010999	53384939	3	50368	0	0	50368
S/G/Y/R/B/O	NT_010289	AC090517	53226424	3			AC012374	53384939	2	89598	0	0	89598
S/G/Y/R/B/O	NT_010289	AC090517	53226424	3			AC013750	53384939	1	39583	1975	0	41558
S/G/Y/R/B/O	NT_010289	AC010999	53384939	3	chr15	NT_010289	AC090511	53556557	3	0	0	0	0
S/G/Y/R/B/O	NT_010289	AC010999	53384939	3			AC008078	53062501	3	78360	0	0	78360
S/G/Y/R/B/O	NT_010289	AC010999	53384939	3			AC012374	53062501	2	102553	0	0	102553
S/G/Y/R/B/O	NT_010289	AC010999	53384939	3			AC013750	53062501	1	109149	0	5986	115135
S/G/Y/R/B/O	NT_010289	AC010999	53384939	3			AC015716	53062501	1	119648	0	0	119648
S/G/Y/R/B/O	NT_010289	AC090511	53556557	3	chr15	NT_010289	AC090532	53618976	3	0	0	0	0
S/G/Y/R/B/O	NT_010289	AC090511	53556557	3			AC015716	53226424	1	87813	0	0	87813
S/G/Y/R/B/O	NT_010289	AC090511	53556557	3			AC016833	53226424	1	23583	2583	0	26166
S/G/Y/R/B/O	NT_010289	AC090511	53556557	3			AC079076	53226424	1	57727	2230	1173	61130
S/G/Y/R/B/O	NT_010289	AC090511	53556557	3			AC091915	53226424	3	61258	0	0	61258
S/G/Y/R/B/O	NT_010289	AC090532	53618976	3	chr15	NT_010289	AC016525	53773176	3	57095	0	0	57095
S/G/Y/R/B/O	NT_010289	AC090532	53618976	3			AC016833	53773176	1	144052	0	0	144052
S/G/Y/R/B/O	NT_010289	AC090532	53618976	3			AC079076	53773176	1	87555	1612	0	89167
S/G/Y/R/B/O	NT_010289	AC090532	53618976	3			AC091915	53773176	3	104210	0	0	104210
S/G/Y/R/B/O	NT_010289	AC016525	53773176	3	chr15	NT_010289	AC025271	53972049	3	24489	0	0	24489
S/G/Y/R/B/O	NT_010289	AC016525	53773176	3			AC008131	53773176	2	110387	0	20145	130532
S/G/Y/R/B/O	NT_010289	AC016525	53773176	3			AC016833	53773176	1	49106	0	0	49106
S/G/Y/R/B/O	NT_010289	AC016525	53773176	3			AC046203	53972049	1	91616	0	0	91616
S/G/Y/R/B/O	NT_010289	AC016525	53773176	3			AC079076	53972049	1	13926	0	0	13926
S/G/Y/R/B/O	NT_010289	AC025271	53972049	3	chr15	NT_010289	AC090651	54138837	2	7701	0	0	7701
S/G/Y/R/B/O	NT_010289	AC025271	53972049	3			AC016971	53773176	2	151544	4631	2861	159036
S/G/Y/R/B/O	NT_010289	AC025271	53972049	3			AC024355	53773176	1	157166	0	0	157166
S/G/Y/R/B/O	NT_010289	AC025271	53972049	3			AC046203	53773176	1	94189	0	0	94189
S/G/Y/R/B/O	NT_010289	AC090651	54138837	2	chr15	NT_010289	AC009658	54200855	1	176392	10478	8554	195424
S/G/Y/R/B/O	NT_010289	AC090651	54138837	2	chr15	NT_010289	AC025916	54234976	3	104431	0	0	104431
S/G/Y/R/B/O	NT_010289	AC009658	54200855	1	chr15	NT_010289	AC025916	54234976	3	80317	1922	6142	88381
S/G/Y/R/B/O	NT_010289	AC025916	54234976	3	chr15	NT_010289	AC012653	54344379	3	4951	0	0	4951
S/G/Y/R/B/O	NT_010289	AC025916	54234976	3	chr15	NT_010289	AC090651	54138837	2	104431	0	0	104431
S/G/Y/R/B/O	NT_010289	AC012653	54344379	3	chr15	NT_010289	AC025431	54529847	3	4443	0	0	4443
S/G/Y/R/B/O	NT_010289	AC012653	54344379	3			AC015474	51186785	1	135847	1857	1083	138787
S/G/Y/R/B/O	NT_010289	AC012653	54344379	3			AC015579	51186785	1	107478	1709	45162	154349
S/G/Y/R/B/O	NT_010289	AC012653	54344379	3			AC079104	54234976	1	49903	0	0	49903
S/G/Y/R/B/O	NT_010289	AC025431	54529847	3	chr15	NT_010289	AC066616	54663525	2	9208	0	0	9208
S/G/Y/R/B/O	NT_010289	AC025431	54529847	3			AC079104	54663525	1	98030	12135	1161	111326
S/G/Y/R/B/O	NT_010289	AC066616	54663525	2	chr15	NT_010289	AC084781	54804123	3	59981	0	0	59981
S/G/Y/R/B/O	NT_010289	AC066616	54663525	2			AC016050	96566711	1	178636	1894	1272	181802
S/G/Y/R/B/O	NT_010289	AC066616	54663525	2			AC024223	96566711	1	56027	2187	2442	60656
S/G/Y/R/B/O	NT_010289	AC084781	54804123	3	chr15	NT_010289	AC018904	54977509	3	9017	0	0	9017
S/G/Y/R/B/O	NT_010289	AC084781	54804123	3			AC024223	54977509	1	153238	1552	7659	162449
S/G/Y/R/B/O	NT_010289	AC018904	54977509	3	chr15	NT_010289	AC091046	55126583	3	48773	0	0	48773
S/G/Y/R/B/O	NT_010289	AC091046	55126583	3	chr15	NT_010289	AC090515	55264654	3	43841	0	0	43841
S/G/Y/R/B/O	NT_010289	AC091046	55126583	3			AC009822	55126583	1	42812	0	1102	43914
S/G/Y/R/B/O	NT_010289	AC091046	55126583	3			AC019299	54977509	1	28663	0	0	28663
S/G/Y/R/B/O	NT_010289	AC091046	55126583	3			AC027358	54977509	1	96179	1576	0	97755
S/G/Y/R/B/O	NT_010289	AC090515	55264654	3	chr15	NT_010289	AC025918	55402407	3	71204	0	0	71204
S/G/Y/R/B/O	NT_010289	AC090515	55264654	3			AC009822	55264654	1	100554	10562	10176	121292
S/G/Y/R/B/O	NT_010289	AC090515	55264654	3			AC019299	55264654	1	140578	5834	945	147357
S/G/Y/R/B/O	NT_010289	AC090515	55264654	3			AC022465	55264654	2	47833	0	43345	91178
S/G/Y/R/B/O	NT_010289	AC090515	55264654	3			AC027358	55402407	1	58514	0	791	59305
S/G/Y/R/B/O	NT_010289	AC090515	55264654	3			AC090265	55402407	1	64571	1616	0	66187
S/G/Y/R/B/O	NT_010289	AC025918	55402407	3	chr15	NT_010289	AC092757	55518936	3	20413	0	0	20413
S/G/Y/R/B/O	NT_010289	AC025918	55402407	3			AC009822	55126583	1	41244	2739	2621	46604
S/G/Y/R/B/O	NT_010289	AC025918	55402407	3			AC019299	55126583	1	43298	2518	944	46760
S/G/Y/R/B/O	NT_010289	AC025918	55402407	3			AC022465	55126583	2	16097	0	0	16097
S/G/Y/R/B/O	NT_010289	AC025918	55402407	3			AC087462	55126583	1	20393	0	0	20393
S/G/Y/R/B/O	NT_010289	AC025918	55402407	3			AC090265	55126583	1	186546	1615	0	188161
S/G/Y/R/B/O	NT_010289	AC092757	55518936	3	chr15	NT_010289	AC092756	55669621	3	56595	0	0	56595
S/G/Y/R/B/O	NT_010289	AC092757	55518936	3			AC023890	55518936	1	65116	0	0	65116
S/G/Y/R/B/O	NT_010289	AC092757	55518936	3			AC087462	55402407	1	152973	0	19699	172672
S/G/Y/R/B/O	NT_010289	AC092756	55669621	3	chr15	NT_010289	AC092868	55803025	3	24730	0	0	24730
S/G/Y/R/B/O	NT_010289	AC092756	55669621	3			AC023325	55669621	1	16161	0	1312	17473
S/G/Y/R/B/O	NT_010289	AC092756	55669621	3			AC023890	55669621	1	119894	1848	2865	124607
S/G/Y/R/B/O	NT_010289	AC092756	55669621	3			AC087462	55669621	1	56415	0	0	56415
S/G/Y/R/B/O	NT_010289	AC092868	55803025	3	chr15	NT_010289	AC091748	55935828	3	129209	0	0	129209
S/G/Y/R/B/O	NT_010289	AC092868	55803025	3			AC023325	55803025	1	120662	2215	5143	128020
S/G/Y/R/B/O	NT_010289	AC091748	55935828	3	chr15	NT_010289	AC092754	55956910	2	4197	0	0	4197
S/G/Y/R/B/O	NT_010289	AC091748	55935828	3			AC023325	55669621	1	79890	2215	3831	85936
S/G/Y/R/B/O	NT_010289	AC092754	55956910	2	chr15	NT_010289	AC092755	56124934	2	0	0	34413	34413
S/G/Y/R/B/O	NT_010289	AC092755	56124934	2	chr15	NT_010289	AC092079	56214823	3	64602	0	0	64602
S/G/Y/R/B/O	NT_010289	AC092079	56214823	3	chr15	NT_010289	AC091700	56410377	3	80178	0	0	80178
S/G/Y/R/B/O	NT_010289	AC092079	56214823	3			AC092770	56124934	2	80129	0	0	80129
S/G/Y/R/B/O	NT_010289	AC091700	56410377	3	chr15	NT_010289	AC009654	56427744	3	0	0	0	0
S/G/Y/R/B/O	NT_010289	AC091700	56410377	3			AC092770	56214823	2	97604	0	0	97604
S/G/Y/R/B/O	NT_010289	AC009654	56427744	3	chr15	NT_010289	AC023190	56617502	3	0	0	0	0
S/G/Y/R/B/O	NT_010289	AC009654	56427744	3			AC022866	56214823	2	62362	0	0	62362
S/G/Y/R/B/O	NT_010289	AC023190	56617502	3	chr15	NT_010289	AC037433	56681950	3	0	0	0	0
S/G/Y/R/B/O	NT_010289	AC023190	56617502	3			AC022866	56214823	2	66007	0	0	66007
S/G/Y/R/B/O	NT_010289	AC037433	56681950	3	chr15	NT_010289	AC009560	56978500	3	0	0	0	0
S/G/Y/R/B/O	NT_010289	AC037433	56681950	3			AC022866	49338239	2	50866	0	1416	52282
S/G/Y/R/B/O	NT_010289	AC009560	56978500	3	chr15	NT_010289	AC020989	57155808	1	35237	0	0	35237
S/G/Y/R/B/O	NT_010289	AC009560	56978500	3	chr15	NT_010289	AC012344	49402293	1	104705	2056	0	106761
S/G/Y/R/B/O	NT_010289	AC020989	57155808	1	chr15	NT_010289	AC022898	57193727	2	146778	0	0	146778
S/G/Y/R/B/O	NT_010289	AC022898	57193727	2	chr15	NT_010289	AC091028	57350567	1	40239	0	1206	41445
S/G/Y/R/B/O	NT_010289	AC091028	57350567	1	chr15	NT_010289	AC079068	57357347	1	73964	2432	0	76396
S/G/Y/R/B/O	NT_010289	AC091028	57350567	1	chr15	NT_010289	AC072035	57385883	1	53016	2410	0	55426
S/G/Y/R/B/O	NT_010289	AC079068	57357347	1	chr15	NT_010289	AC072035	57385883	1	91774	4223	9273	105270
S/G/Y/R/B/O	NT_010289	AC079068	57357347	1	chr15	NT_010289	AC012404	57442123	3	74037	0	0	74037
S/G/Y/R/B/O	NT_010289	AC072035	57385883	1	chr15	NT_010289	AC012404	57442123	3	88361	0	10236	98597
S/G/Y/R/B/O	NT_010289	AC072035	57385883	1	chr15	NT_010289	AC091028	57350567	1	53016	2410	0	55426
S/G/Y/R/B/O	NT_010289	AC012404	57442123	3
S/G/Y/R/B/O	NT_010289	AC012404	57442123	3	chr15	NT_010289	AC079068	57357347	1	74037	0	0	74037