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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010351 | AC013564 | 59941307 | 1 | chr15 | NT_010351 | AC090175 | 60027525 | 1 | 131252 | 11150 | 8185 | 150587 |
| S/G/Y/R/B/O |
NT_010351 | AC013564 | 59941307 | 1 | chr15 | NT_010351 | AC090461 | 60502042 | 3 | 20742 | 0 | 0 | 20742 |
| S/G/Y/R/B/O |
NT_010351 | AC090175 | 60027525 | 1 | chr15 | NT_010351 | AC022254 | 60093705 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010351 | AC022254 | 60093705 | 1 | chr15 | NT_010351 | AC055782 | 60199256 | 2 | 113579 | 0 | 0 | 113579 |
| S/G/Y/R/B/O |
NT_010351 | AC022254 | 60093705 | 1 | chr15 | NT_010351 | AC009292 | 61492519 | 1 | 73799 | 0 | 0 | 73799 |
| S/G/Y/R/B/O |
NT_010351 | AC055782 | 60199256 | 2 | chr15 | NT_010351 | AC016033 | 60253334 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010351 | AC055782 | 60199256 | 2 |   |   | AC024375 | 60093705 | 2 | 52109 | 0 | 0 | 52109 |
| S/G/Y/R/B/O |
NT_010351 | AC016033 | 60253334 | 1 | chr15 | NT_010351 | AC073446 | 60297221 | 1 | 52380 | 0 | 6549 | 58929 |
| S/G/Y/R/B/O |
NT_010351 | AC016033 | 60253334 | 1 | chr15 | NT_033278 | AC023310 | 20525295 | 1 | 21540 | 0 | 14033 | 35573 |
| S/G/Y/R/B/O |
NT_010351 | AC016033 | 60253334 | 1 | chr15 | NT_033278 | AC025138 | 20037514 | 2 | 32086 | 0 | 8811 | 40897 |
| S/G/Y/R/B/O |
NT_010351 | AC016033 | 60253334 | 1 | chr15 | NT_033278 | AC100757 | 20173573 | 3 | 27775 | 0 | 0 | 27775 |
| S/G/Y/R/B/O |
NT_010351 | AC016033 | 60253334 | 1 | chr15 | NT_010351 | AC109338 | 60412553 | 2 | 39785 | 0 | 2688 | 42473 |
| S/G/Y/R/B/O |
NT_010351 | AC016033 | 60253334 | 1 |   |   | AC027267 | 20037514 | 1 | 16277 | 2757 | 945 | 19979 |
| S/G/Y/R/B/O |
NT_010351 | AC016033 | 60253334 | 1 |   |   | AC079017 | 60297221 | 1 | 15499 | 0 | 591 | 16090 |
| S/G/Y/R/B/O |
NT_010351 | AC073446 | 60297221 | 1 | chr15 | NT_010351 | AC109338 | 60412553 | 2 | 133798 | 2897 | 0 | 136695 |
| S/G/Y/R/B/O |
NT_010351 | AC073446 | 60297221 | 1 | chr15 | NT_033278 | AC025138 | 20037514 | 2 | 23522 | 0 | 0 | 23522 |
| S/G/Y/R/B/O |
NT_010351 | AC073446 | 60297221 | 1 |   |   | AC027267 | 20037514 | 1 | 114351 | 6151 | 3656 | 124158 |
| S/G/Y/R/B/O |
NT_010351 | AC073446 | 60297221 | 1 |   |   | AC079017 | 61356957 | 1 | 142021 | 0 | 2758 | 144779 |
| S/G/Y/R/B/O |
NT_010351 | AC109338 | 60412553 | 2 | chr15 | NT_010351 | AC090461 | 60502042 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010351 | AC109338 | 60412553 | 2 | chr15 | NT_010351 | AC016033 | 60253334 | 1 | 39785 | 0 | 2688 | 42473 |
| S/G/Y/R/B/O |
NT_010351 | AC109338 | 60412553 | 2 |   |   | AC027267 | 60253334 | 1 | 56461 | 4506 | 2754 | 63721 |
| S/G/Y/R/B/O |
NT_010351 | AC109338 | 60412553 | 2 |   |   | AC079017 | 60297221 | 1 | 58138 | 0 | 1530 | 59668 |
| S/G/Y/R/B/O |
NT_010351 | AC090461 | 60502042 | 3 | chr15 | NT_010351 | AC093334 | 60563235 | 3 | 106021 | 0 | 0 | 106021 |
| S/G/Y/R/B/O |
NT_010351 | AC090461 | 60502042 | 3 | chr15 | NT_010351 | AC013564 | 59941307 | 1 | 20742 | 0 | 0 | 20742 |
| S/G/Y/R/B/O |
NT_010351 | AC090461 | 60502042 | 3 | chr15 | NT_010351 | AC079620 | 60846315 | 1 | 34916 | 11320 | 46057 | 92293 |
| S/G/Y/R/B/O |
NT_010351 | AC093334 | 60563235 | 3 | chr15 | NT_010351 | AC087482 | 60784042 | 1 | 114786 | 0 | 0 | 114786 |
| S/G/Y/R/B/O |
NT_010351 | AC093334 | 60563235 | 3 | chr15 | NT_010351 | AC026086 | 60792228 | 1 | 95091 | 5228 | 3990 | 104309 |
| S/G/Y/R/B/O |
NT_010351 | AC093334 | 60563235 | 3 | chr15 | NT_010351 | AC079620 | 60846315 | 1 | 100676 | 15998 | 77619 | 194293 |
| S/G/Y/R/B/O |
NT_010351 | AC087482 | 60784042 | 1 | chr15 | NT_010351 | AC026086 | 60792228 | 1 | 138616 | 12973 | 13211 | 164800 |
| S/G/Y/R/B/O |
NT_010351 | AC087482 | 60784042 | 1 | chr15 | NT_010351 | AC079620 | 60846315 | 1 | 54600 | 7061 | 27852 | 89513 |
| S/G/Y/R/B/O |
NT_010351 | AC087482 | 60784042 | 1 |   |   | AC021802 | 60502042 | 2 | 28697 | 0 | 0 | 28697 |
| S/G/Y/R/B/O |
NT_010351 | AC026086 | 60792228 | 1 | chr15 | NT_010351 | AC079620 | 60846315 | 1 | 17728 | 2650 | 19920 | 40298 |
| S/G/Y/R/B/O |
NT_010351 | AC026086 | 60792228 | 1 | chr15 | NT_010351 | AC012568 | 60859017 | 2 | 11290 | 2734 | 0 | 14024 |
| S/G/Y/R/B/O |
NT_010351 | AC026086 | 60792228 | 1 | chr15 | NT_010351 | AC093334 | 60563235 | 3 | 95091 | 5228 | 3990 | 104309 |
| S/G/Y/R/B/O |
NT_010351 | AC026086 | 60792228 | 1 |   |   | AC021802 | 60859017 | 2 | 99108 | 8841 | 0 | 107949 |
| S/G/Y/R/B/O |
NT_010351 | AC079620 | 60846315 | 1 | chr15 | NT_010351 | AC012568 | 60859017 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010351 | AC079620 | 60846315 | 1 | chr15 | NT_010351 | AC087482 | 60784042 | 1 | 54600 | 7061 | 27852 | 89513 |
| S/G/Y/R/B/O |
NT_010351 | AC079620 | 60846315 | 1 | chr15 | NT_010351 | AC090461 | 60502042 | 3 | 34916 | 11320 | 46057 | 92293 |
| S/G/Y/R/B/O |
NT_010351 | AC079620 | 60846315 | 1 | chr15 | NT_010351 | AC093334 | 60563235 | 3 | 100676 | 15998 | 77619 | 194293 |
| S/G/Y/R/B/O |
NT_010351 | AC079620 | 60846315 | 1 |   |   | AC021802 | 60563235 | 2 | 34716 | 0 | 41192 | 75908 |
| S/G/Y/R/B/O |
NT_010351 | AC012568 | 60859017 | 2 | chr15 | NT_010351 | AC110292 | 61020007 | 2 | 34348 | 2840 | 9093 | 46281 |
| S/G/Y/R/B/O |
NT_010351 | AC012568 | 60859017 | 2 | chr15 | NT_010351 | AC016348 | 61091266 | 1 | 63083 | 0 | 6418 | 69501 |
| S/G/Y/R/B/O |
NT_010351 | AC012568 | 60859017 | 2 | chr15 | NT_010351 | AC026086 | 60792228 | 1 | 11290 | 2734 | 0 | 14024 |
| S/G/Y/R/B/O |
NT_010351 | AC110292 | 61020007 | 2 | chr15 | NT_010351 | AC016348 | 61091266 | 1 | 97930 | 4449 | 0 | 102379 |
| S/G/Y/R/B/O |
NT_010351 | AC110292 | 61020007 | 2 | chr15 | NT_010351 | AC005959 | 61092288 | 2 | 35673 | 0 | 72037 | 107710 |
| S/G/Y/R/B/O |
NT_010351 | AC110292 | 61020007 | 2 | chr15 | NT_010351 | AC106000 | 61116310 | 2 | 80014 | 0 | 0 | 80014 |
| S/G/Y/R/B/O |
NT_010351 | AC016348 | 61091266 | 1 | chr15 | NT_010351 | AC005959 | 61092288 | 2 | 31777 | 2842 | 4379 | 38998 |
| S/G/Y/R/B/O |
NT_010351 | AC016348 | 61091266 | 1 | chr15 | NT_010351 | AC012568 | 60859017 | 2 | 63083 | 0 | 6418 | 69501 |
| S/G/Y/R/B/O |
NT_010351 | AC005959 | 61092288 | 2 | chr15 | NT_010351 | AC106000 | 61116310 | 2 | 0 | 0 | 65233 | 65233 |
| S/G/Y/R/B/O |
NT_010351 | AC005959 | 61092288 | 2 | chr15 | NT_010351 | AC110292 | 61020007 | 2 | 35673 | 0 | 72037 | 107710 |
| S/G/Y/R/B/O |
NT_010351 | AC106000 | 61116310 | 2 | chr15 | NT_010351 | AC016355 | 61170529 | 3 | 56828 | 0 | 0 | 56828 |
| S/G/Y/R/B/O |
NT_010351 | AC106000 | 61116310 | 2 | chr15 | NT_010351 | AC110292 | 61020007 | 2 | 80014 | 0 | 0 | 80014 |
| S/G/Y/R/B/O |
NT_010351 | AC016355 | 61170529 | 3 | chr15 | NT_010351 | AC068146 | 61356957 | 1 | 14392 | 0 | 0 | 14392 |
| S/G/Y/R/B/O |
NT_010351 | AC068146 | 61356957 | 1 | chr15 | NT_010351 | AC005958 | 61360183 | 1 | 20133 | 1755 | 7671 | 29559 |
| S/G/Y/R/B/O |
NT_010351 | AC068146 | 61356957 | 1 | chr15 | NT_010351 | AC009292 | 61492519 | 1 | 65845 | 2599 | 649 | 69093 |
| S/G/Y/R/B/O |
NT_010351 | AC005958 | 61360183 | 1 | chr15 | NT_010351 | AC009292 | 61492519 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010351 | AC009292 | 61492519 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010351 | AC009292 | 61492519 | 1 | chr15 | NT_010351 | AC022254 | 60093705 | 1 | 73799 | 0 | 0 | 73799 |
| S/G/Y/R/B/O |
NT_010351 | AC009292 | 61492519 | 1 | chr15 | NT_010351 | AC068146 | 61356957 | 1 | 65845 | 2599 | 649 | 69093 |
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