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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010363 | AC009873 | 26537026 | 1 | chr15 | NT_010363 | AC021316 | 26702152 | 2 | 5740 | 11068 | 11343 | 28151 |
| S/G/Y/R/B/O |
NT_010363 | AC009873 | 26537026 | 1 | chr4 | NT_006257 | AC022691 | 179254338 | 1 | 12967 | 0 | 4382 | 17349 |
| S/G/Y/R/B/O |
NT_010363 | AC009873 | 26537026 | 1 | chr4 | NT_006257 | AC026916 | 178488538 | 1 | 21579 | 15654 | 25235 | 62468 |
| S/G/Y/R/B/O |
NT_010363 | AC009873 | 26537026 | 1 | chr4 | NT_006257 | AC105285 | 179099703 | 3 | 20518 | 3477 | 9902 | 33897 |
| S/G/Y/R/B/O |
NT_010363 | AC021316 | 26702152 | 2 | chr15 | NT_010363 | AC104266 | 26857191 | 2 | 18641 | 0 | 0 | 18641 |
| S/G/Y/R/B/O |
NT_010363 | AC104266 | 26857191 | 2 | chr15 | NT_010363 | AC012236 | 26890628 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010363 | AC104266 | 26857191 | 2 | chr15 | NT_010363 | AC026951 | 27581744 | 2 | 35829 | 0 | 0 | 35829 |
| S/G/Y/R/B/O |
NT_010363 | AC012236 | 26890628 | 2 | chr15 | NT_010363 | AC009562 | 27064357 | 1 | 12152 | 0 | 0 | 12152 |
| S/G/Y/R/B/O |
NT_010363 | AC012236 | 26890628 | 2 |   |   | AC020653 | 26537026 | 1 | 78542 | 2839 | 4148 | 85529 |
| S/G/Y/R/B/O |
NT_010363 | AC009562 | 27064357 | 1 | chr15 | NT_010363 | AC090829 | 27273657 | 3 | 26770 | 0 | 0 | 26770 |
| S/G/Y/R/B/O |
NT_010363 | AC009562 | 27064357 | 1 |   |   | AC020653 | 26890628 | 1 | 32906 | 0 | 15522 | 48428 |
| S/G/Y/R/B/O |
NT_010363 | AC090829 | 27273657 | 3 | chr15 | NT_010363 | AC073220 | 27349808 | 1 | 68446 | 0 | 0 | 68446 |
| S/G/Y/R/B/O |
NT_010363 | AC073220 | 27349808 | 1 | chr15 | NT_010363 | AC087481 | 27364666 | 2 | 100407 | 2618 | 0 | 103025 |
| S/G/Y/R/B/O |
NT_010363 | AC073220 | 27349808 | 1 | chr15 | NT_010363 | AC004460 | 27411856 | 3 | 47905 | 2613 | 5896 | 56414 |
| S/G/Y/R/B/O |
NT_010363 | AC087481 | 27364666 | 2 | chr15 | NT_010363 | AC004460 | 27411856 | 3 | 59833 | 0 | 0 | 59833 |
| S/G/Y/R/B/O |
NT_010363 | AC004460 | 27411856 | 3 | chr15 | NT_010363 | AC026150 | 27525759 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010363 | AC004460 | 27411856 | 3 | chr15 | NT_010363 | AC023151 | 27529941 | 1 | 13267 | 5935 | 2288 | 21490 |
| S/G/Y/R/B/O |
NT_010363 | AC004460 | 27411856 | 3 | chr15 | NT_010363 | AC073220 | 27349808 | 1 | 47905 | 2613 | 5896 | 56414 |
| S/G/Y/R/B/O |
NT_010363 | AC026150 | 27525759 | 1 | chr15 | NT_010363 | AC023151 | 27529941 | 1 | 62118 | 11329 | 5604 | 79051 |
| S/G/Y/R/B/O |
NT_010363 | AC026150 | 27525759 | 1 | chr15 | NT_010363 | AC009673 | 28285548 | 1 | 53825 | 0 | 26689 | 80514 |
| S/G/Y/R/B/O |
NT_010363 | AC026150 | 27525759 | 1 | chr15 | NT_010363 | AC026830 | 28252285 | 1 | 21745 | 1894 | 10419 | 34058 |
| S/G/Y/R/B/O |
NT_010363 | AC023151 | 27529941 | 1 | chr15 | NT_010363 | AC026951 | 27581744 | 2 | 6949 | 0 | 8337 | 15286 |
| S/G/Y/R/B/O |
NT_010363 | AC023151 | 27529941 | 1 | chr15 | NT_010363 | AC004460 | 27411856 | 3 | 13267 | 5935 | 2288 | 21490 |
| S/G/Y/R/B/O |
NT_010363 | AC026951 | 27581744 | 2 | chr15 | NT_010363 | AC079969 | 27770455 | 1 | 35365 | 0 | 0 | 35365 |
| S/G/Y/R/B/O |
NT_010363 | AC026951 | 27581744 | 2 | chr15 | NT_010363 | AC104266 | 26857191 | 2 | 35829 | 0 | 0 | 35829 |
| S/G/Y/R/B/O |
NT_010363 | AC079969 | 27770455 | 1 | chr15 | NT_010363 | AC058803 | 27899096 | 3 | 143573 | 0 | 0 | 143573 |
| S/G/Y/R/B/O |
NT_010363 | AC058803 | 27899096 | 3 | chr15 | NT_010363 | AC068448 | 28102589 | 1 | 44746 | 0 | 0 | 44746 |
| S/G/Y/R/B/O |
NT_010363 | AC058803 | 27899096 | 3 |   |   | AC026570 | 27899096 | 1 | 30499 | 7460 | 0 | 37959 |
| S/G/Y/R/B/O |
NT_010363 | AC068448 | 28102589 | 1 | chr15 | NT_010363 | AC021413 | 28132181 | 1 | 91418 | 0 | 489 | 91907 |
| S/G/Y/R/B/O |
NT_010363 | AC068448 | 28102589 | 1 |   |   | AC026570 | 28132181 | 1 | 119354 | 18086 | 3654 | 141094 |
| S/G/Y/R/B/O |
NT_010363 | AC021413 | 28132181 | 1 | chr15 | NT_010363 | AC026830 | 28252285 | 1 | 53207 | 5809 | 4469 | 63485 |
| S/G/Y/R/B/O |
NT_010363 | AC021413 | 28132181 | 1 | chr15 | NT_010363 | AC010799 | 28517929 | 1 | 43792 | 0 | 0 | 43792 |
| S/G/Y/R/B/O |
NT_010363 | AC021413 | 28132181 | 1 | chr15 | NT_010363 | AC019322 | 28416102 | 2 | 43793 | 0 | 0 | 43793 |
| S/G/Y/R/B/O |
NT_010363 | AC021413 | 28132181 | 1 |   |   | AC026570 | 28416102 | 1 | 35426 | 2904 | 9074 | 47404 |
| S/G/Y/R/B/O |
NT_010363 | AC026830 | 28252285 | 1 | chr15 | NT_010363 | AC009673 | 28285548 | 1 | 57620 | 1894 | 4081 | 63595 |
| S/G/Y/R/B/O |
NT_010363 | AC026830 | 28252285 | 1 | chr15 | NT_010363 | AC010799 | 28517929 | 1 | 23729 | 1892 | 7400 | 33021 |
| S/G/Y/R/B/O |
NT_010363 | AC026830 | 28252285 | 1 | chr15 | NT_010363 | AC026150 | 27525759 | 1 | 21745 | 1894 | 10419 | 34058 |
| S/G/Y/R/B/O |
NT_010363 | AC009673 | 28285548 | 1 | chr15 | NT_010363 | AC019322 | 28416102 | 2 | 14626 | 0 | 0 | 14626 |
| S/G/Y/R/B/O |
NT_010363 | AC009673 | 28285548 | 1 | chr15 | NT_010363 | AC010799 | 28517929 | 1 | 31259 | 0 | 0 | 31259 |
| S/G/Y/R/B/O |
NT_010363 | AC009673 | 28285548 | 1 | chr15 | NT_010363 | AC026150 | 27525759 | 1 | 53825 | 0 | 26689 | 80514 |
| S/G/Y/R/B/O |
NT_010363 | AC019322 | 28416102 | 2 | chr15 | NT_010363 | AC010799 | 28517929 | 1 | 130094 | 0 | 0 | 130094 |
| S/G/Y/R/B/O |
NT_010363 | AC019322 | 28416102 | 2 | chr15 | NT_010363 | AC021413 | 28132181 | 1 | 43793 | 0 | 0 | 43793 |
| S/G/Y/R/B/O |
NT_010363 | AC019322 | 28416102 | 2 |   |   | AC026570 | 27525759 | 1 | 29629 | 2910 | 8314 | 40853 |
| S/G/Y/R/B/O |
NT_010363 | AC010799 | 28517929 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010363 | AC010799 | 28517929 | 1 | chr15 | NT_010363 | AC009673 | 28285548 | 1 | 31259 | 0 | 0 | 31259 |
| S/G/Y/R/B/O |
NT_010363 | AC010799 | 28517929 | 1 | chr15 | NT_010363 | AC021413 | 28132181 | 1 | 43792 | 0 | 0 | 43792 |
| S/G/Y/R/B/O |
NT_010363 | AC010799 | 28517929 | 1 | chr15 | NT_010363 | AC026830 | 28252285 | 1 | 23729 | 1892 | 7400 | 33021 |
| S/G/Y/R/B/O |
NT_010363 | AC010799 | 28517929 | 1 |   |   | AC026570 | 27525759 | 1 | 21978 | 2910 | 15706 | 40594 |
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