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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010343 | AC023140 | 84703132 | 1 | chr15 | NT_010343 | AC110592 | 84737922 | 2 | 101921 | 4903 | 42107 | 148931 |
| S/G/Y/R/B/O |
NT_010343 | AC110592 | 84737922 | 2 | chr15 | NT_010343 | AC022221 | 84891749 | 1 | 22660 | 0 | 0 | 22660 |
| S/G/Y/R/B/O |
NT_010343 | AC110592 | 84737922 | 2 | chr15 | NT_010343 | AC087286 | 84925945 | 1 | 11334 | 0 | 0 | 11334 |
| S/G/Y/R/B/O |
NT_010343 | AC022221 | 84891749 | 1 | chr15 | NT_010343 | AC087286 | 84925945 | 1 | 127208 | 2272 | 11079 | 140559 |
| S/G/Y/R/B/O |
NT_010343 | AC022221 | 84891749 | 1 | chr15 | NT_010343 | AC007897 | 85001272 | 1 | 80709 | 5917 | 9369 | 95995 |
| S/G/Y/R/B/O |
NT_010343 | AC022221 | 84891749 | 1 | chr15 | NT_010343 | AC021739 | 85027555 | 1 | 27313 | 0 | 1090 | 28403 |
| S/G/Y/R/B/O |
NT_010343 | AC022221 | 84891749 | 1 | chr15 | NT_010343 | AC026840 | 85002290 | 1 | 33624 | 0 | 3402 | 37026 |
| S/G/Y/R/B/O |
NT_010343 | AC022221 | 84891749 | 1 | chr15 | NT_010343 | AC068402 | 85027974 | 1 | 67039 | 1752 | 5945 | 74736 |
| S/G/Y/R/B/O |
NT_010343 | AC087286 | 84925945 | 1 | chr15 | NT_010343 | AC007897 | 85001272 | 1 | 94297 | 2645 | 574 | 97516 |
| S/G/Y/R/B/O |
NT_010343 | AC087286 | 84925945 | 1 | chr15 | NT_010343 | AC026840 | 85002290 | 1 | 72356 | 0 | 575 | 72931 |
| S/G/Y/R/B/O |
NT_010343 | AC087286 | 84925945 | 1 | chr15 | NT_010343 | AC110592 | 84737922 | 2 | 11334 | 0 | 0 | 11334 |
| S/G/Y/R/B/O |
NT_010343 | AC007897 | 85001272 | 1 | chr15 | NT_010343 | AC026840 | 85002290 | 1 | 125970 | 0 | 1330 | 127300 |
| S/G/Y/R/B/O |
NT_010343 | AC007897 | 85001272 | 1 | chr15 | NT_010343 | AC021739 | 85027555 | 1 | 81901 | 2129 | 3549 | 87579 |
| S/G/Y/R/B/O |
NT_010343 | AC007897 | 85001272 | 1 | chr15 | NT_010343 | AC022221 | 84891749 | 1 | 80709 | 5917 | 9369 | 95995 |
| S/G/Y/R/B/O |
NT_010343 | AC007897 | 85001272 | 1 | chr15 | NT_010343 | AC068402 | 85027974 | 1 | 106081 | 1762 | 1093 | 108936 |
| S/G/Y/R/B/O |
NT_010343 | AC026840 | 85002290 | 1 | chr15 | NT_010343 | AC021739 | 85027555 | 1 | 93141 | 0 | 16857 | 109998 |
| S/G/Y/R/B/O |
NT_010343 | AC026840 | 85002290 | 1 | chr15 | NT_010343 | AC022221 | 84891749 | 1 | 33624 | 0 | 3402 | 37026 |
| S/G/Y/R/B/O |
NT_010343 | AC026840 | 85002290 | 1 | chr15 | NT_010343 | AC068402 | 85027974 | 1 | 80316 | 0 | 18689 | 99005 |
| S/G/Y/R/B/O |
NT_010343 | AC026840 | 85002290 | 1 | chr15 | NT_010343 | AC087286 | 84925945 | 1 | 72356 | 0 | 575 | 72931 |
| S/G/Y/R/B/O |
NT_010343 | AC021739 | 85027555 | 1 | chr15 | NT_010343 | AC068402 | 85027974 | 1 | 81186 | 2129 | 13189 | 96504 |
| S/G/Y/R/B/O |
NT_010343 | AC021739 | 85027555 | 1 | chr15 | NT_010343 | AC007897 | 85001272 | 1 | 81901 | 2129 | 3549 | 87579 |
| S/G/Y/R/B/O |
NT_010343 | AC021739 | 85027555 | 1 | chr15 | NT_010343 | AC022221 | 84891749 | 1 | 27313 | 0 | 1090 | 28403 |
| S/G/Y/R/B/O |
NT_010343 | AC068402 | 85027974 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010343 | AC068402 | 85027974 | 1 | chr15 | NT_010343 | AC007897 | 85001272 | 1 | 106081 | 1762 | 1093 | 108936 |
| S/G/Y/R/B/O |
NT_010343 | AC068402 | 85027974 | 1 | chr15 | NT_010343 | AC022221 | 84891749 | 1 | 67039 | 1752 | 5945 | 74736 |
| S/G/Y/R/B/O |
NT_010343 | AC068402 | 85027974 | 1 | chr15 | NT_010343 | AC026840 | 85002290 | 1 | 80316 | 0 | 18689 | 99005 |
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