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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_024680 | AC079203 | 28690549 | 1 | chr15 | NT_024680 | AC090877 | 28730714 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024680 | AC079203 | 28690549 | 1 | chr15 | NT_024680 | AC012272 | 30196718 | 1 | 110462 | 8541 | 1879 | 120882 |
| S/G/Y/R/B/O |
NT_024680 | AC079203 | 28690549 | 1 | chr15 | NT_033266 | AC021822 | 30399560 | 1 | 10453 | 0 | 0 | 10453 |
| S/G/Y/R/B/O |
NT_024680 | AC079203 | 28690549 | 1 | chr15 | NT_024680 | AC023951 | 30005026 | 1 | 12087 | 0 | 0 | 12087 |
| S/G/Y/R/B/O |
NT_024680 | AC079203 | 28690549 | 1 | chr15 | NT_024680 | AC069045 | 30059545 | 1 | 20280 | 0 | 0 | 20280 |
| S/G/Y/R/B/O |
NT_024680 | AC079203 | 28690549 | 1 |   |   | AC079188 | 30184537 | 1 | 101559 | 10011 | 5674 | 117244 |
| S/G/Y/R/B/O |
NT_024680 | AC090877 | 28730714 | 1 | chr15 | NT_024680 | AC090982 | 28912174 | 3 | 95297 | 0 | 0 | 95297 |
| S/G/Y/R/B/O |
NT_024680 | AC090877 | 28730714 | 1 |   |   | AC018870 | 30184537 | 1 | 89019 | 0 | 3117 | 92136 |
| S/G/Y/R/B/O |
NT_024680 | AC090877 | 28730714 | 1 |   |   | AC074201 | 30184537 | 1 | 158485 | 0 | 0 | 158485 |
| S/G/Y/R/B/O |
NT_024680 | AC090982 | 28912174 | 3 | chr15 | NT_024680 | AC022309 | 29012153 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024680 | AC090982 | 28912174 | 3 |   |   | AC018515 | 28912174 | 1 | 69036 | 0 | 0 | 69036 |
| S/G/Y/R/B/O |
NT_024680 | AC090982 | 28912174 | 3 |   |   | AC018870 | 28912174 | 1 | 177305 | 6638 | 2502 | 186445 |
| S/G/Y/R/B/O |
NT_024680 | AC090982 | 28912174 | 3 |   |   | AC074201 | 28912174 | 1 | 68745 | 0 | 0 | 68745 |
| S/G/Y/R/B/O |
NT_024680 | AC090982 | 28912174 | 3 |   |   | AC099061 | 28730714 | 1 | 140057 | 0 | 0 | 140057 |
| S/G/Y/R/B/O |
NT_024680 | AC022309 | 29012153 | 3 | chr15 | NT_024680 | AC019278 | 29181108 | 2 | 131746 | 0 | 0 | 131746 |
| S/G/Y/R/B/O |
NT_024680 | AC022309 | 29012153 | 3 | chr15 | NT_024680 | AC023180 | 29306303 | 1 | 161073 | 0 | 0 | 161073 |
| S/G/Y/R/B/O |
NT_024680 | AC022309 | 29012153 | 3 |   |   | AC018515 | 28730714 | 1 | 115863 | 0 | 0 | 115863 |
| S/G/Y/R/B/O |
NT_024680 | AC022309 | 29012153 | 3 |   |   | AC087695 | 29306303 | 1 | 104221 | 0 | 0 | 104221 |
| S/G/Y/R/B/O |
NT_024680 | AC019278 | 29181108 | 2 | chr15 | NT_024680 | AC090098 | 29217711 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024680 | AC019278 | 29181108 | 2 | chr15 | NT_024680 | AC023180 | 29306303 | 1 | 148558 | 0 | 524 | 149082 |
| S/G/Y/R/B/O |
NT_024680 | AC019278 | 29181108 | 2 |   |   | AC087695 | 29306303 | 1 | 121078 | 0 | 0 | 121078 |
| S/G/Y/R/B/O |
NT_024680 | AC090098 | 29217711 | 3 | chr15 | NT_024680 | AC055874 | 29251159 | 1 | 33193 | 0 | 0 | 33193 |
| S/G/Y/R/B/O |
NT_024680 | AC055874 | 29251159 | 1 | chr15 | NT_024680 | AC023180 | 29306303 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024680 | AC055874 | 29251159 | 1 | chr15 | NT_024680 | AC067793 | 29396374 | 2 | 36122 | 0 | 0 | 36122 |
| S/G/Y/R/B/O |
NT_024680 | AC023180 | 29306303 | 1 | chr15 | NT_024680 | AC067793 | 29396374 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024680 | AC023180 | 29306303 | 1 | chr15 | NT_024680 | AC019278 | 29181108 | 2 | 148558 | 0 | 524 | 149082 |
| S/G/Y/R/B/O |
NT_024680 | AC023180 | 29306303 | 1 | chr15 | NT_024680 | AC022309 | 29012153 | 3 | 161073 | 0 | 0 | 161073 |
| S/G/Y/R/B/O |
NT_024680 | AC023180 | 29306303 | 1 |   |   | AC018515 | 77637181 | 1 | 94979 | 0 | 0 | 94979 |
| S/G/Y/R/B/O |
NT_024680 | AC023180 | 29306303 | 1 |   |   | AC087695 | 77797562 | 1 | 151188 | 0 | 0 | 151188 |
| S/G/Y/R/B/O |
NT_024680 | AC067793 | 29396374 | 2 | chr15 | NT_024680 | AC011938 | 29524242 | 2 | 36376 | 0 | 0 | 36376 |
| S/G/Y/R/B/O |
NT_024680 | AC067793 | 29396374 | 2 | chr15 | NT_024680 | AC055874 | 29251159 | 1 | 36122 | 0 | 0 | 36122 |
| S/G/Y/R/B/O |
NT_024680 | AC067793 | 29396374 | 2 |   |   | AC018396 | 29524242 | 1 | 127491 | 0 | 1036 | 128527 |
| S/G/Y/R/B/O |
NT_024680 | AC011938 | 29524242 | 2 | chr15 | NT_024680 | AC087638 | 29647758 | 3 | 27971 | 0 | 0 | 27971 |
| S/G/Y/R/B/O |
NT_024680 | AC011938 | 29524242 | 2 | chr15 | NT_024680 | AC025559 | 30002247 | 1 | 22801 | 0 | 1326 | 24127 |
| S/G/Y/R/B/O |
NT_024680 | AC011938 | 29524242 | 2 |   |   | AC018396 | 112209344 | 1 | 72573 | 5044 | 739 | 78356 |
| S/G/Y/R/B/O |
NT_024680 | AC087638 | 29647758 | 3 | chr15 | NT_024680 | AC010809 | 29797006 | 3 | 23811 | 0 | 0 | 23811 |
| S/G/Y/R/B/O |
NT_024680 | AC087638 | 29647758 | 3 | chr15 | NT_024680 | AC025559 | 30002247 | 1 | 109789 | 18194 | 18156 | 146139 |
| S/G/Y/R/B/O |
NT_024680 | AC087638 | 29647758 | 3 |   |   | AC068737 | 30002247 | 2 | 62451 | 0 | 0 | 62451 |
| S/G/Y/R/B/O |
NT_024680 | AC010809 | 29797006 | 3 | chr15 | NT_024680 | AC009268 | 29970093 | 1 | 47825 | 0 | 0 | 47825 |
| S/G/Y/R/B/O |
NT_024680 | AC010809 | 29797006 | 3 | chr15 | NT_024680 | AC025559 | 30002247 | 1 | 16976 | 6204 | 6428 | 29608 |
| S/G/Y/R/B/O |
NT_024680 | AC009268 | 29970093 | 1 | chr15 | NT_024680 | AC025559 | 30002247 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024680 | AC009268 | 29970093 | 1 | chr15 | NT_024680 | AC023951 | 30005026 | 1 | 71511 | 0 | 24999 | 96510 |
| S/G/Y/R/B/O |
NT_024680 | AC009268 | 29970093 | 1 | chr15 | NT_024680 | AC069045 | 30059545 | 1 | 77098 | 0 | 0 | 77098 |
| S/G/Y/R/B/O |
NT_024680 | AC025559 | 30002247 | 1 | chr15 | NT_024680 | AC023951 | 30005026 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024680 | AC025559 | 30002247 | 1 | chr15 | NT_024680 | AC010809 | 29797006 | 3 | 16976 | 6204 | 6428 | 29608 |
| S/G/Y/R/B/O |
NT_024680 | AC025559 | 30002247 | 1 | chr15 | NT_024680 | AC011938 | 29524242 | 2 | 22801 | 0 | 1326 | 24127 |
| S/G/Y/R/B/O |
NT_024680 | AC025559 | 30002247 | 1 | chr15 | NT_024680 | AC087638 | 29647758 | 3 | 109789 | 18194 | 18156 | 146139 |
| S/G/Y/R/B/O |
NT_024680 | AC025559 | 30002247 | 1 |   |   | AC068737 | 29524242 | 2 | 35972 | 6116 | 8983 | 51071 |
| S/G/Y/R/B/O |
NT_024680 | AC023951 | 30005026 | 1 | chr15 | NT_024680 | AC069045 | 30059545 | 1 | 96172 | 0 | 49377 | 145549 |
| S/G/Y/R/B/O |
NT_024680 | AC023951 | 30005026 | 1 | chr15 | NT_024680 | AC009268 | 29970093 | 1 | 71511 | 0 | 24999 | 96510 |
| S/G/Y/R/B/O |
NT_024680 | AC023951 | 30005026 | 1 | chr15 | NT_024680 | AC012272 | 30196718 | 1 | 23333 | 2590 | 3259 | 29182 |
| S/G/Y/R/B/O |
NT_024680 | AC023951 | 30005026 | 1 | chr15 | NT_024680 | AC079004 | 30184537 | 1 | 47415 | 37554 | 20080 | 105049 |
| S/G/Y/R/B/O |
NT_024680 | AC023951 | 30005026 | 1 | chr15 | NT_024680 | AC079203 | 28690549 | 1 | 12087 | 0 | 0 | 12087 |
| S/G/Y/R/B/O |
NT_024680 | AC069045 | 30059545 | 1 | chr15 | NT_024680 | AC079004 | 30184537 | 1 | 32831 | 37532 | 17353 | 87716 |
| S/G/Y/R/B/O |
NT_024680 | AC069045 | 30059545 | 1 | chr15 | NT_024680 | AC009268 | 29970093 | 1 | 77098 | 0 | 0 | 77098 |
| S/G/Y/R/B/O |
NT_024680 | AC069045 | 30059545 | 1 | chr15 | NT_024680 | AC012272 | 30196718 | 1 | 35675 | 0 | 0 | 35675 |
| S/G/Y/R/B/O |
NT_024680 | AC069045 | 30059545 | 1 | chr15 | NT_024680 | AC079203 | 28690549 | 1 | 20280 | 0 | 0 | 20280 |
| S/G/Y/R/B/O |
NT_024680 | AC079004 | 30184537 | 1 | chr15 | NT_024680 | AC012272 | 30196718 | 1 | 0 | 9817 | 3849 | 13666 |
| S/G/Y/R/B/O |
NT_024680 | AC079004 | 30184537 | 1 | chr15 | NT_024680 | AC023951 | 30005026 | 1 | 47415 | 37554 | 20080 | 105049 |
| S/G/Y/R/B/O |
NT_024680 | AC012272 | 30196718 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_024680 | AC012272 | 30196718 | 1 | chr15 | NT_024680 | AC023951 | 30005026 | 1 | 23333 | 2590 | 3259 | 29182 |
| S/G/Y/R/B/O |
NT_024680 | AC012272 | 30196718 | 1 | chr15 | NT_024680 | AC069045 | 30059545 | 1 | 35675 | 0 | 0 | 35675 |
| S/G/Y/R/B/O |
NT_024680 | AC012272 | 30196718 | 1 | chr15 | NT_024680 | AC079203 | 28690549 | 1 | 110462 | 8541 | 1879 | 120882 |
| S/G/Y/R/B/O |
NT_024680 | AC012272 | 30196718 | 1 |   |   | AC079188 | 26412995 | 1 | 55450 | 5827 | 4447 | 65724 |
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