|
| |
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
| |
| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010342 | AC074095 | 57690980 | 1 | chr15 | NT_010342 | AC012284 | 57745266 | 3 | 71511 | 1871 | 19926 | 93308 |
| S/G/Y/R/B/O |
NT_010342 | AC074095 | 57690980 | 1 | chr15 | NT_010342 | AC104590 | 57820508 | 2 | 16512 | 0 | 0 | 16512 |
| S/G/Y/R/B/O |
NT_010342 | AC012284 | 57745266 | 3 | chr15 | NT_010342 | AC104590 | 57820508 | 2 | 72795 | 0 | 0 | 72795 |
| S/G/Y/R/B/O |
NT_010342 | AC104590 | 57820508 | 2 | chr15 | NT_010342 | AC009554 | 57912106 | 3 | 99787 | 0 | 0 | 99787 |
| S/G/Y/R/B/O |
NT_010342 | AC104590 | 57820508 | 2 | chr15 | NT_010342 | AC074095 | 57690980 | 1 | 16512 | 0 | 0 | 16512 |
| S/G/Y/R/B/O |
NT_010342 | AC009554 | 57912106 | 3 | chr15 | NT_010342 | AC018618 | 58104780 | 2 | 4964 | 0 | 0 | 4964 |
| S/G/Y/R/B/O |
NT_010342 | AC018618 | 58104780 | 2 | chr15 | NT_010342 | AC021542 | 58259320 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010342 | AC018618 | 58104780 | 2 | chr15 | NT_010342 | AC108716 | 58342692 | 1 | 20678 | 0 | 0 | 20678 |
| S/G/Y/R/B/O |
NT_010342 | AC021542 | 58259320 | 3 | chr15 | NT_010342 | AC104574 | 58339434 | 2 | 61029 | 0 | 0 | 61029 |
| S/G/Y/R/B/O |
NT_010342 | AC021542 | 58259320 | 3 | chr15 | NT_010342 | AC108716 | 58342692 | 1 | 78408 | 0 | 0 | 78408 |
| S/G/Y/R/B/O |
NT_010342 | AC104574 | 58339434 | 2 | chr15 | NT_010342 | AC108716 | 58342692 | 1 | 113654 | 0 | 11092 | 124746 |
| S/G/Y/R/B/O |
NT_010342 | AC104574 | 58339434 | 2 | chr15 | NT_010342 | AC107908 | 58407536 | 2 | 22873 | 0 | 0 | 22873 |
| S/G/Y/R/B/O |
NT_010342 | AC108716 | 58342692 | 1 | chr15 | NT_010342 | AC107908 | 58407536 | 2 | 7514 | 1482 | 11059 | 20055 |
| S/G/Y/R/B/O |
NT_010342 | AC108716 | 58342692 | 1 | chr15 | NT_010342 | AC018618 | 58104780 | 2 | 20678 | 0 | 0 | 20678 |
| S/G/Y/R/B/O |
NT_010342 | AC108716 | 58342692 | 1 | chr15 | NT_010342 | AC021542 | 58259320 | 3 | 78408 | 0 | 0 | 78408 |
| S/G/Y/R/B/O |
NT_010342 | AC107908 | 58407536 | 2 | chr15 | NT_010342 | AC021460 | 58478144 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010342 | AC107908 | 58407536 | 2 | chr15 | NT_010342 | AC104574 | 58339434 | 2 | 22873 | 0 | 0 | 22873 |
| S/G/Y/R/B/O |
NT_010342 | AC021460 | 58478144 | 3 | chr15 | NT_010342 | AC032011 | 58624842 | 3 | 97667 | 0 | 0 | 97667 |
| S/G/Y/R/B/O |
NT_010342 | AC021460 | 58478144 | 3 |   |   | AC027542 | 58342692 | 1 | 42264 | 0 | 0 | 42264 |
| S/G/Y/R/B/O |
NT_010342 | AC021460 | 58478144 | 3 |   |   | AC068126 | 58624842 | 1 | 117873 | 0 | 23268 | 141141 |
| S/G/Y/R/B/O |
NT_010342 | AC021460 | 58478144 | 3 |   |   | AC087483 | 57690980 | 1 | 110085 | 0 | 0 | 110085 |
| S/G/Y/R/B/O |
NT_010342 | AC032011 | 58624842 | 3 | chr15 | NT_010342 | AC011927 | 58728375 | 3 | 36439 | 0 | 0 | 36439 |
| S/G/Y/R/B/O |
NT_010342 | AC032011 | 58624842 | 3 |   |   | AC015467 | 58728375 | 1 | 72188 | 0 | 0 | 72188 |
| S/G/Y/R/B/O |
NT_010342 | AC032011 | 58624842 | 3 |   |   | AC027542 | 58478144 | 1 | 150899 | 0 | 0 | 150899 |
| S/G/Y/R/B/O |
NT_010342 | AC032011 | 58624842 | 3 |   |   | AC068126 | 58478144 | 1 | 115817 | 0 | 27289 | 143106 |
| S/G/Y/R/B/O |
NT_010342 | AC032011 | 58624842 | 3 |   |   | AC087483 | 58478144 | 1 | 141095 | 0 | 0 | 141095 |
| S/G/Y/R/B/O |
NT_010342 | AC032011 | 58624842 | 3 |   |   | AC091394 | 58478144 | 3 | 95487 | 0 | 0 | 95487 |
| S/G/Y/R/B/O |
NT_010342 | AC011927 | 58728375 | 3 | chr15 | NT_010342 | AC100839 | 58854542 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010342 | AC011927 | 58728375 | 3 |   |   | AC015467 | 58478144 | 1 | 104661 | 0 | 0 | 104661 |
| S/G/Y/R/B/O |
NT_010342 | AC011927 | 58728375 | 3 |   |   | AC027542 | 58478144 | 1 | 63449 | 0 | 15580 | 79029 |
| S/G/Y/R/B/O |
NT_010342 | AC011927 | 58728375 | 3 |   |   | AC091394 | 58624842 | 3 | 75718 | 0 | 0 | 75718 |
| S/G/Y/R/B/O |
NT_010342 | AC100839 | 58854542 | 3 | chr15 | NT_010342 | AC068233 | 58978658 | 3 | 84674 | 0 | 0 | 84674 |
| S/G/Y/R/B/O |
NT_010342 | AC100839 | 58854542 | 3 |   |   | AC015467 | 58624842 | 1 | 27345 | 0 | 0 | 27345 |
| S/G/Y/R/B/O |
NT_010342 | AC068233 | 58978658 | 3 | chr15 | NT_010342 | AC026030 | 59071459 | 1 | 69308 | 0 | 21811 | 91119 |
| S/G/Y/R/B/O |
NT_010342 | AC026030 | 59071459 | 1 | chr15 | NT_010342 | AC024309 | 59108006 | 1 | 36855 | 2731 | 0 | 39586 |
| S/G/Y/R/B/O |
NT_010342 | AC024309 | 59108006 | 1 | chr15 | NT_010342 | AC079328 | 59162688 | 1 | 118121 | 6938 | 1073 | 126132 |
| S/G/Y/R/B/O |
NT_010342 | AC079328 | 59162688 | 1 | chr15 | NT_010342 | AC087612 | 59342258 | 1 | 46681 | 0 | 0 | 46681 |
| S/G/Y/R/B/O |
NT_010342 | AC087612 | 59342258 | 1 | chr15 | NT_010342 | AC016207 | 59410377 | 3 | 25544 | 0 | 35244 | 60788 |
| S/G/Y/R/B/O |
NT_010342 | AC087612 | 59342258 | 1 |   |   | AC026817 | 59410377 | 1 | 107306 | 10488 | 5550 | 123344 |
| S/G/Y/R/B/O |
NT_010342 | AC016207 | 59410377 | 3 | chr15 | NT_010342 | AC026279 | 59563652 | 1 | 41917 | 0 | 0 | 41917 |
| S/G/Y/R/B/O |
NT_010342 | AC016207 | 59410377 | 3 |   |   | AC026817 | 59563652 | 1 | 38811 | 3932 | 1340 | 44083 |
| S/G/Y/R/B/O |
NT_010342 | AC026279 | 59563652 | 1 | chr15 | NT_010342 | AC023591 | 59595682 | 1 | 74341 | 3405 | 2105 | 79851 |
| S/G/Y/R/B/O |
NT_010342 | AC026279 | 59563652 | 1 | chr15 | NT_010342 | AC007950 | 59633620 | 1 | 34638 | 0 | 0 | 34638 |
| S/G/Y/R/B/O |
NT_010342 | AC023591 | 59595682 | 1 | chr15 | NT_010342 | AC007950 | 59633620 | 1 | 70871 | 2421 | 22249 | 95541 |
| S/G/Y/R/B/O |
NT_010342 | AC007950 | 59633620 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010342 | AC007950 | 59633620 | 1 | chr15 | NT_010342 | AC026279 | 59563652 | 1 | 34638 | 0 | 0 | 34638 |
| |
|
|
|