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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010362 | AC084192 | 18000001 | 1 | chr15 | NT_010362 | AC087386 | 18014518 | 1 | 38631 | 18262 | 7092 | 63985 |
| S/G/Y/R/B/O |
NT_010362 | AC084192 | 18000001 | 1 | chr15 | NT_033275 | AC018963 | 19427731 | 1 | 45599 | 6464 | 13860 | 65923 |
| S/G/Y/R/B/O |
NT_010362 | AC084192 | 18000001 | 1 | chr15 | NT_033275 | AC026495 | 19513522 | 2 | 17110 | 8811 | 14358 | 40279 |
| S/G/Y/R/B/O |
NT_010362 | AC084192 | 18000001 | 1 | chr15 | NT_010362 | AC106029 | 18095428 | 2 | 17160 | 10095 | 16807 | 44062 |
| S/G/Y/R/B/O |
NT_010362 | AC087386 | 18014518 | 1 | chr15 | NT_010362 | AC106029 | 18095428 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010362 | AC087386 | 18014518 | 1 | chr15 | NT_010362 | AC021585 | 18502705 | 1 | 63147 | 0 | 877 | 64024 |
| S/G/Y/R/B/O |
NT_010362 | AC087386 | 18014518 | 1 |   |   | AC037471 | 69841461 | 1 | 24958 | 2020 | 0 | 26978 |
| S/G/Y/R/B/O |
NT_010362 | AC106029 | 18095428 | 2 | chr15 | NT_010362 | AC060768 | 18305100 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010362 | AC106029 | 18095428 | 2 | chr15 | NT_033275 | AC018963 | 19427731 | 1 | 34010 | 0 | 0 | 34010 |
| S/G/Y/R/B/O |
NT_010362 | AC106029 | 18095428 | 2 | chr15 | NT_010362 | AC025884 | 18381144 | 1 | 32792 | 0 | 0 | 32792 |
| S/G/Y/R/B/O |
NT_010362 | AC106029 | 18095428 | 2 | chr15 | NT_010362 | AC084192 | 18000001 | 1 | 17160 | 10095 | 16807 | 44062 |
| S/G/Y/R/B/O |
NT_010362 | AC060768 | 18305100 | 1 | chr15 | NT_010362 | AC010760 | 18381122 | 1 | 112905 | 2700 | 0 | 115605 |
| S/G/Y/R/B/O |
NT_010362 | AC060768 | 18305100 | 1 | chr15 | NT_010362 | AC025884 | 18381144 | 1 | 118806 | 4906 | 2964 | 126676 |
| S/G/Y/R/B/O |
NT_010362 | AC010760 | 18381122 | 1 | chr15 | NT_010362 | AC025884 | 18381144 | 1 | 35139 | 2700 | 0 | 37839 |
| S/G/Y/R/B/O |
NT_010362 | AC010760 | 18381122 | 1 | chr15 | NT_010362 | AL445443 | 18497244 | 2 | 10312 | 0 | 106240 | 116552 |
| S/G/Y/R/B/O |
NT_010362 | AC025884 | 18381144 | 1 | chr15 | NT_010362 | AL445443 | 18497244 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010362 | AC025884 | 18381144 | 1 | chr15 | NT_010362 | AC060768 | 18305100 | 1 | 118806 | 4906 | 2964 | 126676 |
| S/G/Y/R/B/O |
NT_010362 | AC025884 | 18381144 | 1 | chr15 | NT_010362 | AC106029 | 18095428 | 2 | 32792 | 0 | 0 | 32792 |
| S/G/Y/R/B/O |
NT_010362 | AL445443 | 18497244 | 2 | chr15 | NT_010362 | AC021585 | 18502705 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010362 | AL445443 | 18497244 | 2 | chr15 | NT_010362 | AC010760 | 18381122 | 1 | 10312 | 0 | 106240 | 116552 |
| S/G/Y/R/B/O |
NT_010362 | AL445443 | 18497244 | 2 | chr15 | NT_010362 | AC020679 | 18636425 | 3 | 38463 | 0 | 0 | 38463 |
| S/G/Y/R/B/O |
NT_010362 | AC021585 | 18502705 | 1 | chr15 | NT_010362 | AC020679 | 18636425 | 3 | 63690 | 0 | 0 | 63690 |
| S/G/Y/R/B/O |
NT_010362 | AC021585 | 18502705 | 1 | chr15 | NT_010362 | AC023191 | 18730806 | 1 | 122157 | 0 | 0 | 122157 |
| S/G/Y/R/B/O |
NT_010362 | AC021585 | 18502705 | 1 | chr15 | NT_010362 | AC087386 | 18014518 | 1 | 63147 | 0 | 877 | 64024 |
| S/G/Y/R/B/O |
NT_010362 | AC021585 | 18502705 | 1 |   |   | AC037471 | 69841461 | 1 | 140953 | 2022 | 1222 | 144197 |
| S/G/Y/R/B/O |
NT_010362 | AC020679 | 18636425 | 3 | chr15 | NT_010362 | AC023191 | 18730806 | 1 | 84400 | 0 | 0 | 84400 |
| S/G/Y/R/B/O |
NT_010362 | AC020679 | 18636425 | 3 | chr15 | NT_010362 | AL445443 | 18497244 | 2 | 38463 | 0 | 0 | 38463 |
| S/G/Y/R/B/O |
NT_010362 | AC020679 | 18636425 | 3 |   |   | AC037471 | 18730806 | 1 | 90090 | 0 | 0 | 90090 |
| S/G/Y/R/B/O |
NT_010362 | AC020679 | 18636425 | 3 |   |   | AC060814 | 18730806 | 2 | 147336 | 0 | 0 | 147336 |
| S/G/Y/R/B/O |
NT_010362 | AC023191 | 18730806 | 1 | chr15 | NT_010362 | AC068446 | 18750022 | 1 | 6851 | 0 | 0 | 6851 |
| S/G/Y/R/B/O |
NT_010362 | AC023191 | 18730806 | 1 | chr15 | NT_010362 | AC021585 | 18502705 | 1 | 122157 | 0 | 0 | 122157 |
| S/G/Y/R/B/O |
NT_010362 | AC023191 | 18730806 | 1 |   |   | AC037471 | 18502705 | 1 | 85765 | 0 | 0 | 85765 |
| S/G/Y/R/B/O |
NT_010362 | AC023191 | 18730806 | 1 |   |   | AC060814 | 18502705 | 2 | 195665 | 0 | 0 | 195665 |
| S/G/Y/R/B/O |
NT_010362 | AC068446 | 18750022 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010362 | AC068446 | 18750022 | 1 |   |   | AC060814 | 18730806 | 2 | 89428 | 0 | 0 | 89428 |
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