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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_024653 | AC073167 | 61723890 | 1 | chr15 | NT_024653 | AC036149 | 61880668 | 1 | 75941 | 0 | 27120 | 103061 |
| S/G/Y/R/B/O |
NT_024653 | AC073167 | 61723890 | 1 |   |   | AC016179 | 61356957 | 1 | 48642 | 0 | 0 | 48642 |
| S/G/Y/R/B/O |
NT_024653 | AC036149 | 61880668 | 1 | chr15 | NT_024653 | AC015914 | 61899465 | 2 | 91874 | 0 | 0 | 91874 |
| S/G/Y/R/B/O |
NT_024653 | AC036149 | 61880668 | 1 |   |   | AC016179 | 61899465 | 1 | 126152 | 0 | 12051 | 138203 |
| S/G/Y/R/B/O |
NT_024653 | AC015914 | 61899465 | 2 | chr15 | NT_024653 | AC021541 | 62000105 | 3 | 54896 | 0 | 0 | 54896 |
| S/G/Y/R/B/O |
NT_024653 | AC015914 | 61899465 | 2 |   |   | AC016179 | 61723890 | 1 | 116269 | 2750 | 800 | 119819 |
| S/G/Y/R/B/O |
NT_024653 | AC021541 | 62000105 | 3 | chr15 | NT_024653 | AC100840 | 62194128 | 3 | 99426 | 0 | 0 | 99426 |
| S/G/Y/R/B/O |
NT_024653 | AC021541 | 62000105 | 3 |   |   | AC017098 | 61899465 | 1 | 80153 | 0 | 0 | 80153 |
| S/G/Y/R/B/O |
NT_024653 | AC100840 | 62194128 | 3 | chr15 | NT_024653 | AC024631 | 62268814 | 1 | 105214 | 0 | 0 | 105214 |
| S/G/Y/R/B/O |
NT_024653 | AC100840 | 62194128 | 3 | chr15 | NT_024653 | AC110054 | 62342005 | 2 | 51116 | 0 | 0 | 51116 |
| S/G/Y/R/B/O |
NT_024653 | AC100840 | 62194128 | 3 |   |   | AC017098 | 62194128 | 1 | 147079 | 0 | 3393 | 150472 |
| S/G/Y/R/B/O |
NT_024653 | AC100840 | 62194128 | 3 |   |   | AC067846 | 62268814 | 1 | 88782 | 0 | 0 | 88782 |
| S/G/Y/R/B/O |
NT_024653 | AC024631 | 62268814 | 1 | chr15 | NT_024653 | AC110054 | 62342005 | 2 | 104470 | 0 | 19476 | 123946 |
| S/G/Y/R/B/O |
NT_024653 | AC024631 | 62268814 | 1 |   |   | AC017098 | 62342005 | 1 | 66520 | 0 | 11947 | 78467 |
| S/G/Y/R/B/O |
NT_024653 | AC024631 | 62268814 | 1 |   |   | AC067846 | 62342005 | 1 | 158913 | 0 | 0 | 158913 |
| S/G/Y/R/B/O |
NT_024653 | AC110054 | 62342005 | 2 | chr15 | NT_024653 | AC087632 | 62391998 | 1 | 12607 | 0 | 0 | 12607 |
| S/G/Y/R/B/O |
NT_024653 | AC110054 | 62342005 | 2 | chr15 | NT_024653 | AC100840 | 62194128 | 3 | 51116 | 0 | 0 | 51116 |
| S/G/Y/R/B/O |
NT_024653 | AC110054 | 62342005 | 2 |   |   | AC017098 | 62342005 | 1 | 32910 | 0 | 0 | 32910 |
| S/G/Y/R/B/O |
NT_024653 | AC110054 | 62342005 | 2 |   |   | AC067846 | 62268814 | 1 | 87320 | 0 | 19425 | 106745 |
| S/G/Y/R/B/O |
NT_024653 | AC087632 | 62391998 | 1 | chr15 | NT_024653 | AC062023 | 62402777 | 1 | 113712 | 4666 | 15265 | 133643 |
| S/G/Y/R/B/O |
NT_024653 | AC087632 | 62391998 | 1 | chr15 | NT_024653 | AC023148 | 62459329 | 1 | 42514 | 2018 | 7900 | 52432 |
| S/G/Y/R/B/O |
NT_024653 | AC087632 | 62391998 | 1 | chr15 | NT_024653 | AC091231 | 62436087 | 1 | 51534 | 4673 | 0 | 56207 |
| S/G/Y/R/B/O |
NT_024653 | AC062023 | 62402777 | 1 | chr15 | NT_024653 | AC091231 | 62436087 | 1 | 52850 | 0 | 10555 | 63405 |
| S/G/Y/R/B/O |
NT_024653 | AC062023 | 62402777 | 1 | chr15 | NT_024653 | AC023148 | 62459329 | 1 | 26511 | 0 | 3610 | 30121 |
| S/G/Y/R/B/O |
NT_024653 | AC091231 | 62436087 | 1 | chr15 | NT_024653 | AC023148 | 62459329 | 1 | 142867 | 0 | 8276 | 151143 |
| S/G/Y/R/B/O |
NT_024653 | AC091231 | 62436087 | 1 | chr15 | NT_024653 | AC016905 | 62596200 | 1 | 28193 | 0 | 26052 | 54245 |
| S/G/Y/R/B/O |
NT_024653 | AC091231 | 62436087 | 1 | chr15 | NT_024653 | AC073177 | 62622938 | 1 | 25670 | 0 | 509 | 26179 |
| S/G/Y/R/B/O |
NT_024653 | AC091231 | 62436087 | 1 | chr15 | NT_024653 | AC087632 | 62391998 | 1 | 51534 | 4673 | 0 | 56207 |
| S/G/Y/R/B/O |
NT_024653 | AC091231 | 62436087 | 1 | chr15 | NT_024653 | AC090543 | 62614511 | 1 | 50160 | 0 | 0 | 50160 |
| S/G/Y/R/B/O |
NT_024653 | AC023148 | 62459329 | 1 | chr15 | NT_024653 | AC016905 | 62596200 | 1 | 5059 | 0 | 14111 | 19170 |
| S/G/Y/R/B/O |
NT_024653 | AC023148 | 62459329 | 1 | chr15 | NT_024653 | AC062023 | 62402777 | 1 | 26511 | 0 | 3610 | 30121 |
| S/G/Y/R/B/O |
NT_024653 | AC023148 | 62459329 | 1 | chr15 | NT_024653 | AC073177 | 62622938 | 1 | 24749 | 0 | 7998 | 32747 |
| S/G/Y/R/B/O |
NT_024653 | AC023148 | 62459329 | 1 | chr15 | NT_024653 | AC087632 | 62391998 | 1 | 42514 | 2018 | 7900 | 52432 |
| S/G/Y/R/B/O |
NT_024653 | AC023148 | 62459329 | 1 | chr15 | NT_024653 | AC090543 | 62614511 | 1 | 24714 | 0 | 0 | 24714 |
| S/G/Y/R/B/O |
NT_024653 | AC016905 | 62596200 | 1 | chr15 | NT_024653 | AC090543 | 62614511 | 1 | 44461 | 1959 | 77760 | 124180 |
| S/G/Y/R/B/O |
NT_024653 | AC016905 | 62596200 | 1 | chr15 | NT_024653 | AC073177 | 62622938 | 1 | 28101 | 1960 | 76396 | 106457 |
| S/G/Y/R/B/O |
NT_024653 | AC016905 | 62596200 | 1 | chr15 | NT_024653 | AC091231 | 62436087 | 1 | 28193 | 0 | 26052 | 54245 |
| S/G/Y/R/B/O |
NT_024653 | AC090543 | 62614511 | 1 | chr15 | NT_024653 | AC073177 | 62622938 | 1 | 32149 | 0 | 102536 | 134685 |
| S/G/Y/R/B/O |
NT_024653 | AC090543 | 62614511 | 1 | chr15 | NT_024653 | AC023148 | 62459329 | 1 | 24714 | 0 | 0 | 24714 |
| S/G/Y/R/B/O |
NT_024653 | AC090543 | 62614511 | 1 | chr15 | NT_024653 | AC091231 | 62436087 | 1 | 50160 | 0 | 0 | 50160 |
| S/G/Y/R/B/O |
NT_024653 | AC090543 | 62614511 | 1 | chr15 | NT_024653 | AC099686 | 62809950 | 1 | 42119 | 0 | 0 | 42119 |
| S/G/Y/R/B/O |
NT_024653 | AC073177 | 62622938 | 1 | chr15 | NT_024653 | AC099686 | 62809950 | 1 | 0 | 0 | 18769 | 18769 |
| S/G/Y/R/B/O |
NT_024653 | AC073177 | 62622938 | 1 | chr15 | NT_024653 | AC016905 | 62596200 | 1 | 28101 | 1960 | 76396 | 106457 |
| S/G/Y/R/B/O |
NT_024653 | AC073177 | 62622938 | 1 | chr15 | NT_024653 | AC023148 | 62459329 | 1 | 24749 | 0 | 7998 | 32747 |
| S/G/Y/R/B/O |
NT_024653 | AC073177 | 62622938 | 1 | chr15 | NT_024653 | AC091231 | 62436087 | 1 | 25670 | 0 | 509 | 26179 |
| S/G/Y/R/B/O |
NT_024653 | AC099686 | 62809950 | 1 | chr15 | NT_024653 | AC091582 | 62834922 | 1 | 6914 | 0 | 0 | 6914 |
| S/G/Y/R/B/O |
NT_024653 | AC099686 | 62809950 | 1 | chr15 | NT_024653 | AC090543 | 62614511 | 1 | 42119 | 0 | 0 | 42119 |
| S/G/Y/R/B/O |
NT_024653 | AC091582 | 62834922 | 1 | chr15 | NT_024653 | AC023671 | 62875898 | 1 | 39931 | 1691 | 57528 | 99150 |
| S/G/Y/R/B/O |
NT_024653 | AC023671 | 62875898 | 1 | chr15 | NT_024653 | AC069368 | 62946439 | 2 | 32020 | 2950 | 17497 | 52467 |
| S/G/Y/R/B/O |
NT_024653 | AC069368 | 62946439 | 2 |   |   |   |   |   |   |   |   |   |
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