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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010265 | AC011939 | 63145952 | 1 | chr15 | NT_010265 | AC084854 | 63147081 | 1 | 38320 | 0 | 0 | 38320 |
| S/G/Y/R/B/O |
NT_010265 | AC011939 | 63145952 | 1 | chr15 | NT_010265 | AC027220 | 63356128 | 1 | 44544 | 0 | 0 | 44544 |
| S/G/Y/R/B/O |
NT_010265 | AC084854 | 63147081 | 1 | chr15 | NT_010265 | AC027736 | 63169719 | 1 | 40500 | 17652 | 9853 | 68005 |
| S/G/Y/R/B/O |
NT_010265 | AC027736 | 63169719 | 1 | chr15 | NT_010265 | AC027220 | 63356128 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010265 | AC027736 | 63169719 | 1 | chr15 | NT_010265 | AC009433 | 64045762 | 2 | 60147 | 1803 | 0 | 61950 |
| S/G/Y/R/B/O |
NT_010265 | AC027736 | 63169719 | 1 | chr15 | NT_010265 | AC011847 | 64215400 | 3 | 49194 | 1799 | 0 | 50993 |
| S/G/Y/R/B/O |
NT_010265 | AC027220 | 63356128 | 1 | chr15 | NT_010265 | AC011846 | 63487640 | 2 | 66905 | 0 | 19018 | 85923 |
| S/G/Y/R/B/O |
NT_010265 | AC027220 | 63356128 | 1 | chr15 | NT_010265 | AC011939 | 63145952 | 1 | 44544 | 0 | 0 | 44544 |
| S/G/Y/R/B/O |
NT_010265 | AC011846 | 63487640 | 2 | chr15 | NT_010265 | AC105129 | 63602264 | 2 | 88127 | 0 | 7927 | 96054 |
| S/G/Y/R/B/O |
NT_010265 | AC011846 | 63487640 | 2 |   |   | AC068507 | 63356128 | 1 | 43171 | 0 | 4582 | 47753 |
| S/G/Y/R/B/O |
NT_010265 | AC105129 | 63602264 | 2 | chr15 | NT_010265 | AC025997 | 63716316 | 1 | 35248 | 0 | 19547 | 54795 |
| S/G/Y/R/B/O |
NT_010265 | AC105129 | 63602264 | 2 | chr15 | NT_010265 | AC015714 | 63730951 | 1 | 69507 | 2416 | 0 | 71923 |
| S/G/Y/R/B/O |
NT_010265 | AC105129 | 63602264 | 2 |   |   | AC068507 | 63731166 | 1 | 96025 | 9016 | 24249 | 129290 |
| S/G/Y/R/B/O |
NT_010265 | AC025997 | 63716316 | 1 | chr15 | NT_010265 | AC015714 | 63730951 | 1 | 58132 | 2422 | 10112 | 70666 |
| S/G/Y/R/B/O |
NT_010265 | AC025997 | 63716316 | 1 | chr15 | NT_010265 | AC068213 | 63731166 | 1 | 111969 | 0 | 0 | 111969 |
| S/G/Y/R/B/O |
NT_010265 | AC025997 | 63716316 | 1 |   |   | AB022430 | 63731166 | 3 | 19442 | 0 | 0 | 19442 |
| S/G/Y/R/B/O |
NT_010265 | AC025997 | 63716316 | 1 |   |   | AC068507 | 63731166 | 1 | 21330 | 7489 | 12679 | 41498 |
| S/G/Y/R/B/O |
NT_010265 | AC015714 | 63730951 | 1 | chr15 | NT_010265 | AC068213 | 63731166 | 1 | 91627 | 0 | 5565 | 97192 |
| S/G/Y/R/B/O |
NT_010265 | AC015714 | 63730951 | 1 | chr15 | NT_010265 | AC105129 | 63602264 | 2 | 69507 | 2416 | 0 | 71923 |
| S/G/Y/R/B/O |
NT_010265 | AC015714 | 63730951 | 1 |   |   | AC068507 | 63731166 | 1 | 26242 | 7476 | 12723 | 46441 |
| S/G/Y/R/B/O |
NT_010265 | AC068213 | 63731166 | 1 | chr15 | NT_010265 | AC013553 | 63760479 | 2 | 39975 | 0 | 0 | 39975 |
| S/G/Y/R/B/O |
NT_010265 | AC068213 | 63731166 | 1 | chr15 | NT_010265 | AC025997 | 63716316 | 1 | 111969 | 0 | 0 | 111969 |
| S/G/Y/R/B/O |
NT_010265 | AC068213 | 63731166 | 1 | chr15 | NT_010265 | AC068573 | 63945343 | 1 | 40250 | 4376 | 25782 | 70408 |
| S/G/Y/R/B/O |
NT_010265 | AC068213 | 63731166 | 1 |   |   | AB022430 | 63602264 | 3 | 19442 | 0 | 0 | 19442 |
| S/G/Y/R/B/O |
NT_010265 | AC068213 | 63731166 | 1 |   |   | AC068507 | 63716316 | 1 | 13441 | 7489 | 9625 | 30555 |
| S/G/Y/R/B/O |
NT_010265 | AC013553 | 63760479 | 2 | chr15 | NT_010265 | AC068573 | 63945343 | 1 | 135358 | 4373 | 19519 | 159250 |
| S/G/Y/R/B/O |
NT_010265 | AC068573 | 63945343 | 1 | chr15 | NT_010265 | AC009433 | 64045762 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010265 | AC068573 | 63945343 | 1 | chr15 | NT_010265 | AC068213 | 63731166 | 1 | 40250 | 4376 | 25782 | 70408 |
| S/G/Y/R/B/O |
NT_010265 | AC009433 | 64045762 | 2 | chr15 | NT_010265 | AC011847 | 64215400 | 3 | 151888 | 0 | 0 | 151888 |
| S/G/Y/R/B/O |
NT_010265 | AC009433 | 64045762 | 2 | chr15 | NT_010265 | AC027736 | 63169719 | 1 | 60147 | 1803 | 0 | 61950 |
| S/G/Y/R/B/O |
NT_010265 | AC011847 | 64215400 | 3 | chr15 | NT_010265 | AC087382 | 64242104 | 1 | 27559 | 0 | 0 | 27559 |
| S/G/Y/R/B/O |
NT_010265 | AC011847 | 64215400 | 3 | chr15 | NT_010265 | AC021978 | 64351788 | 1 | 21063 | 0 | 3937 | 25000 |
| S/G/Y/R/B/O |
NT_010265 | AC011847 | 64215400 | 3 | chr15 | NT_010265 | AC027736 | 63169719 | 1 | 49194 | 1799 | 0 | 50993 |
| S/G/Y/R/B/O |
NT_010265 | AC087382 | 64242104 | 1 | chr15 | NT_010265 | AC021978 | 64351788 | 1 | 178380 | 22725 | 11219 | 212324 |
| S/G/Y/R/B/O |
NT_010265 | AC087382 | 64242104 | 1 | chr15 | NT_010265 | AC055855 | 64435452 | 1 | 37652 | 0 | 10445 | 48097 |
| S/G/Y/R/B/O |
NT_010265 | AC021978 | 64351788 | 1 | chr15 | NT_010265 | AC055855 | 64435452 | 1 | 22194 | 4835 | 1257 | 28286 |
| S/G/Y/R/B/O |
NT_010265 | AC021978 | 64351788 | 1 | chr15 | NT_010265 | AC011847 | 64215400 | 3 | 21063 | 0 | 3937 | 25000 |
| S/G/Y/R/B/O |
NT_010265 | AC055855 | 64435452 | 1 | chr15 | NT_010265 | AC011276 | 64456465 | 1 | 81514 | 0 | 7187 | 88701 |
| S/G/Y/R/B/O |
NT_010265 | AC055855 | 64435452 | 1 | chr15 | NT_010265 | AC087382 | 64242104 | 1 | 37652 | 0 | 10445 | 48097 |
| S/G/Y/R/B/O |
NT_010265 | AC011276 | 64456465 | 1 |   |   |   |   |   |   |   |   |   |
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