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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_024670 | AC105204 | 86659264 | 2 | chr15 | NT_024670 | AC011629 | 86661454 | 1 | 3193 | 0 | 0 | 3193 |
| S/G/Y/R/B/O |
NT_024670 | AC105204 | 86659264 | 2 | chr15 | NT_024670 | AC013551 | 87003698 | 3 | 102270 | 0 | 51391 | 153661 |
| S/G/Y/R/B/O |
NT_024670 | AC105204 | 86659264 | 2 | chr15 | NT_024670 | AC078905 | 86865078 | 3 | 31863 | 0 | 0 | 31863 |
| S/G/Y/R/B/O |
NT_024670 | AC105204 | 86659264 | 2 | chr15 | NT_024670 | AC079208 | 87041316 | 2 | 100197 | 0 | 0 | 100197 |
| S/G/Y/R/B/O |
NT_024670 | AC105204 | 86659264 | 2 |   |   | AC026297 | 7104156 | 1 | 138833 | 3237 | 11933 | 154003 |
| S/G/Y/R/B/O |
NT_024670 | AC105204 | 86659264 | 2 |   |   | AC087488 | 87041316 | 1 | 173774 | 0 | 2380 | 176154 |
| S/G/Y/R/B/O |
NT_024670 | AC011629 | 86661454 | 1 | chr15 | NT_024670 | AC016987 | 86688439 | 3 | 63693 | 0 | 0 | 63693 |
| S/G/Y/R/B/O |
NT_024670 | AC011629 | 86661454 | 1 | chr15 | NT_024670 | AC078905 | 86865078 | 3 | 90166 | 1943 | 1037 | 93146 |
| S/G/Y/R/B/O |
NT_024670 | AC011629 | 86661454 | 1 |   |   | AC104589 | 86865078 | 2 | 95280 | 0 | 27223 | 122503 |
| S/G/Y/R/B/O |
NT_024670 | AC016987 | 86688439 | 3 | chr15 | NT_024670 | AC078905 | 86865078 | 3 | 71118 | 0 | 0 | 71118 |
| S/G/Y/R/B/O |
NT_024670 | AC078905 | 86865078 | 3 | chr15 | NT_024670 | AC013551 | 87003698 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024670 | AC078905 | 86865078 | 3 | chr15 | NT_024670 | AC011629 | 86661454 | 1 | 90166 | 1943 | 1037 | 93146 |
| S/G/Y/R/B/O |
NT_024670 | AC078905 | 86865078 | 3 | chr15 | NT_024670 | AC105204 | 86659264 | 2 | 31863 | 0 | 0 | 31863 |
| S/G/Y/R/B/O |
NT_024670 | AC078905 | 86865078 | 3 |   |   | AC104589 | 86688439 | 2 | 58378 | 0 | 93186 | 151564 |
| S/G/Y/R/B/O |
NT_024670 | AC013551 | 87003698 | 3 | chr15 | NT_024670 | AC079208 | 87041316 | 2 | 64499 | 0 | 0 | 64499 |
| S/G/Y/R/B/O |
NT_024670 | AC013551 | 87003698 | 3 | chr15 | NT_024670 | AC105204 | 86659264 | 2 | 102270 | 0 | 51391 | 153661 |
| S/G/Y/R/B/O |
NT_024670 | AC013551 | 87003698 | 3 |   |   | AC026297 | 86659264 | 1 | 87482 | 6196 | 46117 | 139795 |
| S/G/Y/R/B/O |
NT_024670 | AC013551 | 87003698 | 3 |   |   | AC087488 | 87041316 | 1 | 84071 | 0 | 2500 | 86571 |
| S/G/Y/R/B/O |
NT_024670 | AC079208 | 87041316 | 2 | chr15 | NT_024670 | AC018787 | 87209568 | 3 | 54835 | 0 | 0 | 54835 |
| S/G/Y/R/B/O |
NT_024670 | AC079208 | 87041316 | 2 | chr15 | NT_024670 | AC105204 | 86659264 | 2 | 100197 | 0 | 0 | 100197 |
| S/G/Y/R/B/O |
NT_024670 | AC079208 | 87041316 | 2 |   |   | AC026297 | 87209568 | 1 | 76419 | 1850 | 9756 | 88025 |
| S/G/Y/R/B/O |
NT_024670 | AC079208 | 87041316 | 2 |   |   | AC087488 | 87209568 | 1 | 89571 | 0 | 0 | 89571 |
| S/G/Y/R/B/O |
NT_024670 | AC018787 | 87209568 | 3 | chr15 | NT_024670 | AC090257 | 87245427 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024670 | AC018787 | 87209568 | 3 | chr15 | NT_033269 | AC015558 | 88309088 | 1 | 88354 | 0 | 0 | 88354 |
| S/G/Y/R/B/O |
NT_024670 | AC090257 | 87245427 | 3 | chr15 | NT_024670 | AC068206 | 87320023 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024670 | AC090257 | 87245427 | 3 | chr15 | NT_033269 | AC015558 | 88309088 | 1 | 159295 | 0 | 0 | 159295 |
| S/G/Y/R/B/O |
NT_024670 | AC068206 | 87320023 | 3 | chr15 | NT_024670 | AC020687 | 87364249 | 3 | 70228 | 0 | 0 | 70228 |
| S/G/Y/R/B/O |
NT_024670 | AC068206 | 87320023 | 3 | chr15 | NT_033269 | AC015558 | 88309088 | 1 | 107883 | 0 | 0 | 107883 |
| S/G/Y/R/B/O |
NT_024670 | AC020687 | 87364249 | 3 | chr15 | NT_024670 | AC103871 | 87463591 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024670 | AC020687 | 87364249 | 3 | chr15 | NT_033269 | AC015558 | 88309088 | 1 | 72043 | 0 | 0 | 72043 |
| S/G/Y/R/B/O |
NT_024670 | AC103871 | 87463591 | 3 | chr15 | NT_024670 | AC015463 | 87610487 | 3 | 20246 | 0 | 0 | 20246 |
| S/G/Y/R/B/O |
NT_024670 | AC103871 | 87463591 | 3 |   |   | AC107876 | 87610487 | 3 | 46875 | 0 | 0 | 46875 |
| S/G/Y/R/B/O |
NT_024670 | AC015463 | 87610487 | 3 | chr15 | NT_024670 | AC011966 | 87651357 | 3 | 20544 | 0 | 0 | 20544 |
| S/G/Y/R/B/O |
NT_024670 | AC011966 | 87651357 | 3 | chr15 | NT_024670 | AC021677 | 87798675 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024670 | AC021677 | 87798675 | 2 | chr15 | NT_024670 | AC009711 | 87974436 | 2 | 38305 | 0 | 0 | 38305 |
| S/G/Y/R/B/O |
NT_024670 | AC021677 | 87798675 | 2 |   |   | AC023844 | 87974436 | 2 | 176520 | 0 | 0 | 176520 |
| S/G/Y/R/B/O |
NT_024670 | AC009711 | 87974436 | 2 | chr15 | NT_024670 | AC015556 | 88142055 | 1 | 37391 | 0 | 0 | 37391 |
| S/G/Y/R/B/O |
NT_024670 | AC009711 | 87974436 | 2 | chr15 | NT_024670 | AC087593 | 88221434 | 1 | 36124 | 0 | 0 | 36124 |
| S/G/Y/R/B/O |
NT_024670 | AC009711 | 87974436 | 2 |   |   | AC023844 | 87798675 | 2 | 37065 | 0 | 0 | 37065 |
| S/G/Y/R/B/O |
NT_024670 | AC015556 | 88142055 | 1 | chr15 | NT_024670 | AC087593 | 88221434 | 1 | 97142 | 0 | 12767 | 109909 |
| S/G/Y/R/B/O |
NT_024670 | AC087593 | 88221434 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_024670 | AC087593 | 88221434 | 1 | chr15 | NT_024670 | AC009711 | 87974436 | 2 | 36124 | 0 | 0 | 36124 |
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