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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_024674 | AC026540 | 85269014 | 1 | chr15 | NT_024674 | AC104593 | 85358501 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024674 | AC026540 | 85269014 | 1 | chr15 | NT_024674 | AC068822 | 85475146 | 1 | 17925 | 0 | 0 | 17925 |
| S/G/Y/R/B/O |
NT_024674 | AC026540 | 85269014 | 1 |   |   | AC024318 | 85425172 | 1 | 23783 | 3627 | 3602 | 31012 |
| S/G/Y/R/B/O |
NT_024674 | AC026540 | 85269014 | 1 |   |   | AC024374 | 85425172 | 1 | 43973 | 8075 | 3455 | 55503 |
| S/G/Y/R/B/O |
NT_024674 | AC026540 | 85269014 | 1 |   |   | AL591856 | 85475146 | 1 | 107321 | 8154 | 7019 | 122494 |
| S/G/Y/R/B/O |
NT_024674 | AC104593 | 85358501 | 2 | chr15 | NT_024674 | AC025841 | 85379823 | 1 | 109790 | 0 | 0 | 109790 |
| S/G/Y/R/B/O |
NT_024674 | AC104593 | 85358501 | 2 | chr15 | NT_024674 | AC016180 | 85493265 | 3 | 28717 | 0 | 122049 | 150766 |
| S/G/Y/R/B/O |
NT_024674 | AC025841 | 85379823 | 1 | chr15 | NT_024674 | AC009706 | 85425172 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024674 | AC025841 | 85379823 | 1 | chr15 | NT_024674 | AC016180 | 85493265 | 3 | 82162 | 0 | 0 | 82162 |
| S/G/Y/R/B/O |
NT_024674 | AC009706 | 85425172 | 1 | chr15 | NT_024674 | AC068822 | 85475146 | 1 | 19450 | 2558 | 39443 | 61451 |
| S/G/Y/R/B/O |
NT_024674 | AC009706 | 85425172 | 1 |   |   | AL592183 | 85475146 | 2 | 167554 | 0 | 1023 | 168577 |
| S/G/Y/R/B/O |
NT_024674 | AC068822 | 85475146 | 1 | chr15 | NT_024674 | AC016180 | 85493265 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024674 | AC068822 | 85475146 | 1 | chr15 | NT_024674 | AC026540 | 85269014 | 1 | 17925 | 0 | 0 | 17925 |
| S/G/Y/R/B/O |
NT_024674 | AC068822 | 85475146 | 1 |   |   | AL591856 | 85269014 | 1 | 18971 | 0 | 0 | 18971 |
| S/G/Y/R/B/O |
NT_024674 | AC068822 | 85475146 | 1 |   |   | AL592183 | 85269014 | 2 | 26619 | 5320 | 50158 | 82097 |
| S/G/Y/R/B/O |
NT_024674 | AC016180 | 85493265 | 3 | chr15 | NT_024674 | AC107978 | 85645005 | 2 | 32973 | 0 | 0 | 32973 |
| S/G/Y/R/B/O |
NT_024674 | AC016180 | 85493265 | 3 | chr15 | NT_024674 | AC025841 | 85379823 | 1 | 82162 | 0 | 0 | 82162 |
| S/G/Y/R/B/O |
NT_024674 | AC016180 | 85493265 | 3 | chr15 | NT_024674 | AC104593 | 85358501 | 2 | 28717 | 0 | 122049 | 150766 |
| S/G/Y/R/B/O |
NT_024674 | AC016180 | 85493265 | 3 | chr15 | NT_024674 | AC108711 | 85669112 | 1 | 32885 | 0 | 0 | 32885 |
| S/G/Y/R/B/O |
NT_024674 | AC107978 | 85645005 | 2 | chr15 | NT_024674 | AC108711 | 85669112 | 1 | 0 | 0 | 45067 | 45067 |
| S/G/Y/R/B/O |
NT_024674 | AC107978 | 85645005 | 2 | chr15 | NT_024674 | AC025842 | 85720717 | 2 | 15967 | 0 | 0 | 15967 |
| S/G/Y/R/B/O |
NT_024674 | AC108711 | 85669112 | 1 | chr15 | NT_024674 | AC025842 | 85720717 | 2 | 122318 | 0 | 0 | 122318 |
| S/G/Y/R/B/O |
NT_024674 | AC108711 | 85669112 | 1 | chr15 | NT_024674 | AC016180 | 85493265 | 3 | 32885 | 0 | 0 | 32885 |
| S/G/Y/R/B/O |
NT_024674 | AC025842 | 85720717 | 2 | chr15 | NT_024674 | AC069197 | 85851257 | 3 | 29574 | 0 | 0 | 29574 |
| S/G/Y/R/B/O |
NT_024674 | AC025842 | 85720717 | 2 | chr15 | NT_024674 | AC107978 | 85645005 | 2 | 15967 | 0 | 0 | 15967 |
| S/G/Y/R/B/O |
NT_024674 | AC069197 | 85851257 | 3 | chr15 | NT_024674 | AC022817 | 85938368 | 3 | 45845 | 0 | 0 | 45845 |
| S/G/Y/R/B/O |
NT_024674 | AC069197 | 85851257 | 3 |   |   | AC011050 | 85669112 | 1 | 85845 | 0 | 1555 | 87400 |
| S/G/Y/R/B/O |
NT_024674 | AC022817 | 85938368 | 3 | chr15 | NT_024674 | AC012229 | 86065406 | 1 | 65433 | 0 | 4727 | 70160 |
| S/G/Y/R/B/O |
NT_024674 | AC022817 | 85938368 | 3 | chr15 | NT_024674 | AC021790 | 86178934 | 1 | 73377 | 2411 | 0 | 75788 |
| S/G/Y/R/B/O |
NT_024674 | AC022817 | 85938368 | 3 | chr15 | NT_024674 | AC090176 | 86180445 | 1 | 62029 | 9143 | 1296 | 72468 |
| S/G/Y/R/B/O |
NT_024674 | AC022817 | 85938368 | 3 |   |   | AC011050 | 85720717 | 1 | 78813 | 2106 | 0 | 80919 |
| S/G/Y/R/B/O |
NT_024674 | AC012229 | 86065406 | 1 | chr15 | NT_024674 | AC021790 | 86178934 | 1 | 116742 | 0 | 0 | 116742 |
| S/G/Y/R/B/O |
NT_024674 | AC012229 | 86065406 | 1 | chr15 | NT_024674 | AC090176 | 86180445 | 1 | 142837 | 9255 | 0 | 152092 |
| S/G/Y/R/B/O |
NT_024674 | AC021790 | 86178934 | 1 | chr15 | NT_024674 | AC090176 | 86180445 | 1 | 105928 | 9252 | 0 | 115180 |
| S/G/Y/R/B/O |
NT_024674 | AC021790 | 86178934 | 1 | chr15 | NT_024674 | AC022817 | 85938368 | 3 | 73377 | 2411 | 0 | 75788 |
| S/G/Y/R/B/O |
NT_024674 | AC090176 | 86180445 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_024674 | AC090176 | 86180445 | 1 | chr15 | NT_024674 | AC012229 | 86065406 | 1 | 142837 | 9255 | 0 | 152092 |
| S/G/Y/R/B/O |
NT_024674 | AC090176 | 86180445 | 1 | chr15 | NT_024674 | AC022817 | 85938368 | 3 | 62029 | 9143 | 1296 | 72468 |
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