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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_019601 | AC022558 | 77881958 | 3 | chr15 | NT_019601 | AC024270 | 78068361 | 3 | 11300 | 0 | 0 | 11300 |
| S/G/Y/R/B/O |
NT_019601 | AC022558 | 77881958 | 3 |   |   | AC018910 | 77579567 | 1 | 38857 | 0 | 6737 | 45594 |
| S/G/Y/R/B/O |
NT_019601 | AC024270 | 78068361 | 3 | chr15 | NT_019601 | AC103876 | 78241173 | 3 | 12070 | 0 | 0 | 12070 |
| S/G/Y/R/B/O |
NT_019601 | AC024270 | 78068361 | 3 |   |   | AC018910 | 78068361 | 1 | 124688 | 7742 | 7576 | 140006 |
| S/G/Y/R/B/O |
NT_019601 | AC024270 | 78068361 | 3 |   |   | AC069400 | 77881958 | 1 | 95960 | 4017 | 10693 | 110670 |
| S/G/Y/R/B/O |
NT_019601 | AC103876 | 78241173 | 3 | chr15 | NT_019601 | AC073247 | 78342301 | 1 | 0 | 0 | 1263 | 1263 |
| S/G/Y/R/B/O |
NT_019601 | AC103876 | 78241173 | 3 | chr15 | NT_019601 | AC040930 | 78349091 | 1 | 21675 | 0 | 0 | 21675 |
| S/G/Y/R/B/O |
NT_019601 | AC073247 | 78342301 | 1 | chr15 | NT_019601 | AC040930 | 78349091 | 1 | 73965 | 7598 | 39408 | 120971 |
| S/G/Y/R/B/O |
NT_019601 | AC073247 | 78342301 | 1 | chr15 | NT_019601 | AC025483 | 78414808 | 3 | 36296 | 2335 | 15555 | 54186 |
| S/G/Y/R/B/O |
NT_019601 | AC073247 | 78342301 | 1 |   |   | AC024701 | 49374998 | 1 | 15532 | 0 | 1855 | 17387 |
| S/G/Y/R/B/O |
NT_019601 | AC040930 | 78349091 | 1 | chr15 | NT_019601 | AC025483 | 78414808 | 3 | 44194 | 2876 | 26990 | 74060 |
| S/G/Y/R/B/O |
NT_019601 | AC040930 | 78349091 | 1 | chr15 | NT_019601 | AC103876 | 78241173 | 3 | 21675 | 0 | 0 | 21675 |
| S/G/Y/R/B/O |
NT_019601 | AC040930 | 78349091 | 1 |   |   | AC024701 | 49374998 | 1 | 39661 | 0 | 18858 | 58519 |
| S/G/Y/R/B/O |
NT_019601 | AC025483 | 78414808 | 3 | chr15 | NT_019601 | AC090083 | 78594904 | 2 | 31679 | 0 | 0 | 31679 |
| S/G/Y/R/B/O |
NT_019601 | AC025483 | 78414808 | 3 | chr15 | NT_019601 | AC073247 | 78342301 | 1 | 36296 | 2335 | 15555 | 54186 |
| S/G/Y/R/B/O |
NT_019601 | AC025483 | 78414808 | 3 |   |   | AC024701 | 49374998 | 1 | 141029 | 4650 | 19013 | 164692 |
| S/G/Y/R/B/O |
NT_019601 | AC090083 | 78594904 | 2 | chr15 | NT_019601 | AC087738 | 78659457 | 2 | 62617 | 0 | 0 | 62617 |
| S/G/Y/R/B/O |
NT_019601 | AC090083 | 78594904 | 2 | chr15 | NT_019601 | AC015715 | 78805548 | 1 | 11652 | 1516 | 0 | 13168 |
| S/G/Y/R/B/O |
NT_019601 | AC090083 | 78594904 | 2 |   |   | AC010673 | 78594904 | 2 | 41246 | 0 | 7336 | 48582 |
| S/G/Y/R/B/O |
NT_019601 | AC090083 | 78594904 | 2 |   |   | AC024701 | 78805548 | 1 | 31149 | 1918 | 0 | 33067 |
| S/G/Y/R/B/O |
NT_019601 | AC087738 | 78659457 | 2 | chr15 | NT_019601 | AC009689 | 78746535 | 1 | 77270 | 0 | 19345 | 96615 |
| S/G/Y/R/B/O |
NT_019601 | AC087738 | 78659457 | 2 | chr15 | NT_019601 | AC015715 | 78805548 | 1 | 113951 | 11454 | 2162 | 127567 |
| S/G/Y/R/B/O |
NT_019601 | AC087738 | 78659457 | 2 |   |   | AC010673 | 78746535 | 2 | 124407 | 0 | 20819 | 145226 |
| S/G/Y/R/B/O |
NT_019601 | AC009689 | 78746535 | 1 | chr15 | NT_019601 | AC015715 | 78805548 | 1 | 26604 | 11866 | 10152 | 48622 |
| S/G/Y/R/B/O |
NT_019601 | AC009689 | 78746535 | 1 |   |   | AC010673 | 78594904 | 2 | 80388 | 0 | 3032 | 83420 |
| S/G/Y/R/B/O |
NT_019601 | AC015715 | 78805548 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_019601 | AC015715 | 78805548 | 1 | chr15 | NT_019601 | AC087738 | 78659457 | 2 | 113951 | 11454 | 2162 | 127567 |
| S/G/Y/R/B/O |
NT_019601 | AC015715 | 78805548 | 1 | chr15 | NT_019601 | AC090083 | 78594904 | 2 | 11652 | 1516 | 0 | 13168 |
| S/G/Y/R/B/O |
NT_019601 | AC015715 | 78805548 | 1 |   |   | AC010673 | 78746535 | 2 | 60571 | 4088 | 16573 | 81232 |
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