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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033278 | AC055876 | 19786548 | 1 | chr15 | NT_033278 | AC024930 | 19961192 | 1 | 19272 | 2503 | 20272 | 42047 |
| S/G/Y/R/B/O |
NT_033278 | AC055876 | 19786548 | 1 | chr15 | NT_033278 | AC025138 | 20037514 | 2 | 33753 | 0 | 12689 | 46442 |
| S/G/Y/R/B/O |
NT_033278 | AC024930 | 19961192 | 1 | chr15 | NT_033278 | AC091565 | 19969565 | 1 | 100720 | 9667 | 36470 | 146857 |
| S/G/Y/R/B/O |
NT_033278 | AC024930 | 19961192 | 1 | chr15 | NT_033278 | AC025138 | 20037514 | 2 | 51976 | 7271 | 27547 | 86794 |
| S/G/Y/R/B/O |
NT_033278 | AC024930 | 19961192 | 1 | chr15 | NT_033275 | AC026495 | 19513522 | 2 | 10896 | 0 | 24597 | 35493 |
| S/G/Y/R/B/O |
NT_033278 | AC024930 | 19961192 | 1 | chr15 | NT_033278 | AC100757 | 20173573 | 3 | 15042 | 0 | 0 | 15042 |
| S/G/Y/R/B/O |
NT_033278 | AC091565 | 19969565 | 1 | chr15 | NT_033278 | AC025138 | 20037514 | 2 | 97095 | 2142 | 0 | 99237 |
| S/G/Y/R/B/O |
NT_033278 | AC025138 | 20037514 | 2 | chr15 | NT_033278 | AC100757 | 20173573 | 3 | 36807 | 0 | 0 | 36807 |
| S/G/Y/R/B/O |
NT_033278 | AC025138 | 20037514 | 2 | chr15 | NT_010351 | AC016033 | 60253334 | 1 | 32086 | 0 | 8811 | 40897 |
| S/G/Y/R/B/O |
NT_033278 | AC025138 | 20037514 | 2 | chr15 | NT_033278 | AC018348 | 20427351 | 1 | 16731 | 0 | 35635 | 52366 |
| S/G/Y/R/B/O |
NT_033278 | AC025138 | 20037514 | 2 | chr15 | NT_033278 | AC023310 | 20525295 | 1 | 57800 | 0 | 0 | 57800 |
| S/G/Y/R/B/O |
NT_033278 | AC025138 | 20037514 | 2 | chr15 | NT_033278 | AC024930 | 19961192 | 1 | 51976 | 7271 | 27547 | 86794 |
| S/G/Y/R/B/O |
NT_033278 | AC025138 | 20037514 | 2 | chr15 | NT_033275 | AC026495 | 19513522 | 2 | 38131 | 0 | 0 | 38131 |
| S/G/Y/R/B/O |
NT_033278 | AC025138 | 20037514 | 2 | chr15 | NT_033278 | AC055876 | 19786548 | 1 | 33753 | 0 | 12689 | 46442 |
| S/G/Y/R/B/O |
NT_033278 | AC025138 | 20037514 | 2 | chr15 | NT_010351 | AC073446 | 60297221 | 1 | 23522 | 0 | 0 | 23522 |
| S/G/Y/R/B/O |
NT_033278 | AC025138 | 20037514 | 2 |   |   | AC079017 | 60297221 | 1 | 12035 | 0 | 0 | 12035 |
| S/G/Y/R/B/O |
NT_033278 | AC100757 | 20173573 | 3 | chr15 | NT_033278 | AC004583 | 20295304 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033278 | AC100757 | 20173573 | 3 | chr15 | NT_010351 | AC016033 | 60253334 | 1 | 27775 | 0 | 0 | 27775 |
| S/G/Y/R/B/O |
NT_033278 | AC100757 | 20173573 | 3 | chr15 | NT_033278 | AC023310 | 20525295 | 1 | 139904 | 1522 | 20483 | 161909 |
| S/G/Y/R/B/O |
NT_033278 | AC100757 | 20173573 | 3 | chr15 | NT_033278 | AC024930 | 19961192 | 1 | 15042 | 0 | 0 | 15042 |
| S/G/Y/R/B/O |
NT_033278 | AC100757 | 20173573 | 3 |   |   | AC079017 | 20037514 | 1 | 12065 | 0 | 11623 | 23688 |
| S/G/Y/R/B/O |
NT_033278 | AC004583 | 20295304 | 3 | chr15 | NT_033278 | AC091304 | 20381777 | 1 | 45969 | 0 | 0 | 45969 |
| S/G/Y/R/B/O |
NT_033278 | AC004583 | 20295304 | 3 | chr15 | NT_033278 | AC018348 | 20427351 | 1 | 43206 | 0 | 0 | 43206 |
| S/G/Y/R/B/O |
NT_033278 | AC091304 | 20381777 | 1 | chr15 | NT_033278 | AC018348 | 20427351 | 1 | 100090 | 0 | 50215 | 150305 |
| S/G/Y/R/B/O |
NT_033278 | AC091304 | 20381777 | 1 | chr15 | NT_033278 | AC023310 | 20525295 | 1 | 22400 | 0 | 1511 | 23911 |
| S/G/Y/R/B/O |
NT_033278 | AC018348 | 20427351 | 1 | chr15 | NT_033278 | AC023310 | 20525295 | 1 | 20957 | 0 | 12201 | 33158 |
| S/G/Y/R/B/O |
NT_033278 | AC018348 | 20427351 | 1 | chr15 | NT_033278 | AC004583 | 20295304 | 3 | 43206 | 0 | 0 | 43206 |
| S/G/Y/R/B/O |
NT_033278 | AC018348 | 20427351 | 1 | chr15 | NT_033278 | AC025138 | 20037514 | 2 | 16731 | 0 | 35635 | 52366 |
| S/G/Y/R/B/O |
NT_033278 | AC023310 | 20525295 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033278 | AC023310 | 20525295 | 1 | chr15 | NT_010351 | AC016033 | 60253334 | 1 | 21540 | 0 | 14033 | 35573 |
| S/G/Y/R/B/O |
NT_033278 | AC023310 | 20525295 | 1 | chr15 | NT_033278 | AC025138 | 20037514 | 2 | 57800 | 0 | 0 | 57800 |
| S/G/Y/R/B/O |
NT_033278 | AC023310 | 20525295 | 1 | chr15 | NT_033278 | AC091304 | 20381777 | 1 | 22400 | 0 | 1511 | 23911 |
| S/G/Y/R/B/O |
NT_033278 | AC023310 | 20525295 | 1 | chr15 | NT_033278 | AC100757 | 20173573 | 3 | 139904 | 1522 | 20483 | 161909 |
| S/G/Y/R/B/O |
NT_033278 | AC023310 | 20525295 | 1 |   |   | AC079017 | 61356957 | 1 | 12053 | 0 | 11619 | 23672 |
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