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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010332 | AC048383 | 66159350 | 1 | chr15 | NT_010332 | AC009715 | 66249458 | 1 | 25672 | 3643 | 8627 | 37942 |
| S/G/Y/R/B/O |
NT_010332 | AC048383 | 66159350 | 1 | chr15 | NT_010332 | AC009434 | 66324321 | 2 | 54227 | 0 | 1437 | 55664 |
| S/G/Y/R/B/O |
NT_010332 | AC048383 | 66159350 | 1 | chr15 | NT_010332 | AC011648 | 66511389 | 1 | 38056 | 2133 | 413 | 40602 |
| S/G/Y/R/B/O |
NT_010332 | AC009715 | 66249458 | 1 | chr15 | NT_010332 | AC009434 | 66324321 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010332 | AC009715 | 66249458 | 1 | chr15 | NT_010332 | AC011648 | 66511389 | 1 | 123034 | 6208 | 0 | 129242 |
| S/G/Y/R/B/O |
NT_010332 | AC009715 | 66249458 | 1 | chr15 | NT_010332 | AC021958 | 66767164 | 1 | 16621 | 2974 | 0 | 19595 |
| S/G/Y/R/B/O |
NT_010332 | AC009715 | 66249458 | 1 | chr15 | NT_010332 | AC026583 | 66591692 | 2 | 39734 | 0 | 0 | 39734 |
| S/G/Y/R/B/O |
NT_010332 | AC009434 | 66324321 | 2 | chr15 | NT_010332 | AC087699 | 66447543 | 1 | 18328 | 0 | 0 | 18328 |
| S/G/Y/R/B/O |
NT_010332 | AC009434 | 66324321 | 2 | chr15 | NT_010332 | AC048383 | 66159350 | 1 | 54227 | 0 | 1437 | 55664 |
| S/G/Y/R/B/O |
NT_010332 | AC009434 | 66324321 | 2 |   |   | AC010076 | 106997000 | 2 | 32392 | 0 | 0 | 32392 |
| S/G/Y/R/B/O |
NT_010332 | AC087699 | 66447543 | 1 | chr15 | NT_010332 | AC011648 | 66511389 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010332 | AC087699 | 66447543 | 1 | chr15 | NT_010332 | AC009269 | 67347055 | 2 | 12523 | 0 | 0 | 12523 |
| S/G/Y/R/B/O |
NT_010332 | AC087699 | 66447543 | 1 |   |   | AC010076 | 66324321 | 2 | 94795 | 0 | 44705 | 139500 |
| S/G/Y/R/B/O |
NT_010332 | AC011648 | 66511389 | 1 | chr15 | NT_010332 | AC026583 | 66591692 | 2 | 26311 | 0 | 0 | 26311 |
| S/G/Y/R/B/O |
NT_010332 | AC011648 | 66511389 | 1 | chr15 | NT_010332 | AC009715 | 66249458 | 1 | 123034 | 6208 | 0 | 129242 |
| S/G/Y/R/B/O |
NT_010332 | AC011648 | 66511389 | 1 | chr15 | NT_010332 | AC048383 | 66159350 | 1 | 38056 | 2133 | 413 | 40602 |
| S/G/Y/R/B/O |
NT_010332 | AC026583 | 66591692 | 2 | chr15 | NT_010332 | AC021958 | 66767164 | 1 | 131711 | 0 | 0 | 131711 |
| S/G/Y/R/B/O |
NT_010332 | AC026583 | 66591692 | 2 | chr15 | NT_010332 | AC009715 | 66249458 | 1 | 39734 | 0 | 0 | 39734 |
| S/G/Y/R/B/O |
NT_010332 | AC026583 | 66591692 | 2 | chr15 | NT_010332 | AC068327 | 66802508 | 2 | 78594 | 0 | 0 | 78594 |
| S/G/Y/R/B/O |
NT_010332 | AC021958 | 66767164 | 1 | chr15 | NT_010332 | AC068327 | 66802508 | 2 | 59195 | 0 | 0 | 59195 |
| S/G/Y/R/B/O |
NT_010332 | AC021958 | 66767164 | 1 | chr15 | NT_010332 | AC009715 | 66249458 | 1 | 16621 | 2974 | 0 | 19595 |
| S/G/Y/R/B/O |
NT_010332 | AC068327 | 66802508 | 2 | chr15 | NT_010332 | AC018987 | 66840629 | 2 | 47590 | 0 | 0 | 47590 |
| S/G/Y/R/B/O |
NT_010332 | AC068327 | 66802508 | 2 | chr15 | NT_010332 | AC026583 | 66591692 | 2 | 78594 | 0 | 0 | 78594 |
| S/G/Y/R/B/O |
NT_010332 | AC018987 | 66840629 | 2 | chr15 | NT_010332 | AC021818 | 66895968 | 2 | 61500 | 0 | 65581 | 127081 |
| S/G/Y/R/B/O |
NT_010332 | AC021818 | 66895968 | 2 | chr15 | NT_010332 | AC009677 | 67062240 | 1 | 31389 | 0 | 0 | 31389 |
| S/G/Y/R/B/O |
NT_010332 | AC009677 | 67062240 | 1 | chr15 | NT_010332 | AC011725 | 67135055 | 1 | 56087 | 35539 | 22963 | 114589 |
| S/G/Y/R/B/O |
NT_010332 | AC011725 | 67135055 | 1 | chr15 | NT_010332 | AC009269 | 67347055 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010332 | AC009269 | 67347055 | 2 | chr15 | NT_010332 | AC090868 | 67519905 | 2 | 127501 | 0 | 0 | 127501 |
| S/G/Y/R/B/O |
NT_010332 | AC009269 | 67347055 | 2 | chr15 | NT_010332 | AC087699 | 66447543 | 1 | 12523 | 0 | 0 | 12523 |
| S/G/Y/R/B/O |
NT_010332 | AC009269 | 67347055 | 2 |   |   | AC010076 | 15779475 | 2 | 12522 | 0 | 0 | 12522 |
| S/G/Y/R/B/O |
NT_010332 | AC009269 | 67347055 | 2 |   |   | AC074236 | 15779475 | 1 | 77434 | 11551 | 13997 | 102982 |
| S/G/Y/R/B/O |
NT_010332 | AC090868 | 67519905 | 2 | chr15 | NT_010332 | AC084703 | 67576291 | 3 | 24996 | 0 | 0 | 24996 |
| S/G/Y/R/B/O |
NT_010332 | AC090868 | 67519905 | 2 |   |   | AC074236 | 67347055 | 1 | 115626 | 11553 | 27120 | 154299 |
| S/G/Y/R/B/O |
NT_010332 | AC084703 | 67576291 | 3 | chr15 | NT_010332 | AC013752 | 67662187 | 2 | 82801 | 0 | 0 | 82801 |
| S/G/Y/R/B/O |
NT_010332 | AC084703 | 67576291 | 3 |   |   | AC074236 | 67662187 | 1 | 12070 | 0 | 0 | 12070 |
| S/G/Y/R/B/O |
NT_010332 | AC013752 | 67662187 | 2 | chr15 | NT_010332 | AC068181 | 67679988 | 3 | 83147 | 0 | 0 | 83147 |
| S/G/Y/R/B/O |
NT_010332 | AC068181 | 67679988 | 3 | chr15 | NT_010332 | AC015711 | 67865243 | 3 | 79623 | 0 | 0 | 79623 |
| S/G/Y/R/B/O |
NT_010332 | AC015711 | 67865243 | 3 | chr15 | NT_010332 | AC064799 | 67958213 | 2 | 92942 | 0 | 0 | 92942 |
| S/G/Y/R/B/O |
NT_010332 | AC064799 | 67958213 | 2 | chr15 | NT_010332 | AC013764 | 68058582 | 1 | 68161 | 0 | 0 | 68161 |
| S/G/Y/R/B/O |
NT_010332 | AC064799 | 67958213 | 2 | chr15 | NT_010332 | AC105132 | 68060525 | 2 | 42463 | 0 | 0 | 42463 |
| S/G/Y/R/B/O |
NT_010332 | AC013764 | 68058582 | 1 | chr15 | NT_010332 | AC105132 | 68060525 | 2 | 46472 | 0 | 2935 | 49407 |
| S/G/Y/R/B/O |
NT_010332 | AC013764 | 68058582 | 1 | chr15 | NT_010332 | AC108861 | 68147625 | 2 | 43249 | 0 | 0 | 43249 |
| S/G/Y/R/B/O |
NT_010332 | AC105132 | 68060525 | 2 | chr15 | NT_010332 | AC108861 | 68147625 | 2 | 9477 | 0 | 0 | 9477 |
| S/G/Y/R/B/O |
NT_010332 | AC105132 | 68060525 | 2 | chr15 | NT_010332 | AC064799 | 67958213 | 2 | 42463 | 0 | 0 | 42463 |
| S/G/Y/R/B/O |
NT_010332 | AC108861 | 68147625 | 2 | chr15 | NT_010332 | AC104943 | 68200736 | 2 | 51695 | 0 | 1262 | 52957 |
| S/G/Y/R/B/O |
NT_010332 | AC108861 | 68147625 | 2 | chr15 | NT_010332 | AC013764 | 68058582 | 1 | 43249 | 0 | 0 | 43249 |
| S/G/Y/R/B/O |
NT_010332 | AC104943 | 68200736 | 2 | chr15 | NT_010332 | AC026636 | 68297884 | 1 | 69491 | 0 | 0 | 69491 |
| S/G/Y/R/B/O |
NT_010332 | AC026636 | 68297884 | 1 | chr15 | NT_010332 | AC104938 | 68387411 | 2 | 60959 | 0 | 0 | 60959 |
| S/G/Y/R/B/O |
NT_010332 | AC026636 | 68297884 | 1 | chr15 | NT_010332 | AC023120 | 68456786 | 1 | 12957 | 0 | 0 | 12957 |
| S/G/Y/R/B/O |
NT_010332 | AC104938 | 68387411 | 2 | chr15 | NT_010332 | AC023120 | 68456786 | 1 | 113132 | 0 | 18888 | 132020 |
| S/G/Y/R/B/O |
NT_010332 | AC104938 | 68387411 | 2 | chr15 | NT_010332 | AC084299 | 68508069 | 1 | 84453 | 0 | 5671 | 90124 |
| S/G/Y/R/B/O |
NT_010332 | AC104938 | 68387411 | 2 |   |   | AJ276674 | 92832823 | 3 | 35397 | 0 | 0 | 35397 |
| S/G/Y/R/B/O |
NT_010332 | AC023120 | 68456786 | 1 | chr15 | NT_010332 | AC084299 | 68508069 | 1 | 114961 | 9741 | 9016 | 133718 |
| S/G/Y/R/B/O |
NT_010332 | AC023120 | 68456786 | 1 | chr15 | NT_010332 | AC022872 | 68569101 | 2 | 54756 | 0 | 0 | 54756 |
| S/G/Y/R/B/O |
NT_010332 | AC023120 | 68456786 | 1 | chr15 | NT_010332 | AC026636 | 68297884 | 1 | 12957 | 0 | 0 | 12957 |
| S/G/Y/R/B/O |
NT_010332 | AC023120 | 68456786 | 1 |   |   | AJ276674 | 92832823 | 3 | 18915 | 0 | 0 | 18915 |
| S/G/Y/R/B/O |
NT_010332 | AC084299 | 68508069 | 1 | chr15 | NT_010332 | AC022872 | 68569101 | 2 | 32522 | 9717 | 0 | 42239 |
| S/G/Y/R/B/O |
NT_010332 | AC084299 | 68508069 | 1 | chr15 | NT_010332 | AC104938 | 68387411 | 2 | 84453 | 0 | 5671 | 90124 |
| S/G/Y/R/B/O |
NT_010332 | AC084299 | 68508069 | 1 |   |   | AJ276674 | 92832823 | 3 | 16215 | 0 | 0 | 16215 |
| S/G/Y/R/B/O |
NT_010332 | AC022872 | 68569101 | 2 | chr15 | NT_010332 | AC090557 | 68737057 | 1 | 118829 | 9080 | 0 | 127909 |
| S/G/Y/R/B/O |
NT_010332 | AC022872 | 68569101 | 2 | chr15 | NT_010332 | AC023120 | 68456786 | 1 | 54756 | 0 | 0 | 54756 |
| S/G/Y/R/B/O |
NT_010332 | AC022872 | 68569101 | 2 |   |   | AC090454 | 54996188 | 1 | 56737 | 0 | 678 | 57415 |
| S/G/Y/R/B/O |
NT_010332 | AC090557 | 68737057 | 1 | chr15 | NT_010332 | AC020779 | 68751711 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010332 | AC090557 | 68737057 | 1 |   |   | AC090454 | 54996188 | 1 | 32176 | 1520 | 0 | 33696 |
| S/G/Y/R/B/O |
NT_010332 | AC020779 | 68751711 | 3 | chr15 | NT_010332 | AC009690 | 68922834 | 3 | 18140 | 0 | 0 | 18140 |
| S/G/Y/R/B/O |
NT_010332 | AC020779 | 68751711 | 3 |   |   | AC090454 | 68922834 | 1 | 98774 | 0 | 592 | 99366 |
| S/G/Y/R/B/O |
NT_010332 | AC020779 | 68751711 | 3 |   |   | AC091121 | 68922834 | 1 | 72804 | 0 | 0 | 72804 |
| S/G/Y/R/B/O |
NT_010332 | AC009690 | 68922834 | 3 | chr15 | NT_010332 | AC079322 | 69089331 | 1 | 19713 | 2646 | 1036 | 23395 |
| S/G/Y/R/B/O |
NT_010332 | AC009690 | 68922834 | 3 |   |   | AC091121 | 69089331 | 1 | 141622 | 0 | 0 | 141622 |
| S/G/Y/R/B/O |
NT_010332 | AC079322 | 69089331 | 1 | chr15 | NT_010332 | AC016659 | 69187221 | 3 | 167422 | 0 | 0 | 167422 |
| S/G/Y/R/B/O |
NT_010332 | AC079322 | 69089331 | 1 | chr15 | NT_010332 | AC026012 | 69270869 | 1 | 71521 | 1655 | 0 | 73176 |
| S/G/Y/R/B/O |
NT_010332 | AC079322 | 69089331 | 1 |   |   | AC012481 | 68922834 | 1 | 54420 | 0 | 4845 | 59265 |
| S/G/Y/R/B/O |
NT_010332 | AC016659 | 69187221 | 3 | chr15 | NT_010332 | AC026012 | 69270869 | 1 | 148017 | 1655 | 0 | 149672 |
| S/G/Y/R/B/O |
NT_010332 | AC016659 | 69187221 | 3 |   |   | AC012481 | 69270869 | 1 | 101938 | 0 | 1228 | 103166 |
| S/G/Y/R/B/O |
NT_010332 | AC026012 | 69270869 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010332 | AC026012 | 69270869 | 1 | chr15 | NT_010332 | AC079322 | 69089331 | 1 | 71521 | 1655 | 0 | 73176 |
| S/G/Y/R/B/O |
NT_010332 | AC026012 | 69270869 | 1 |   |   | AC012481 | 69089331 | 1 | 105315 | 1655 | 29317 | 136287 |
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