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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010404 | AC026467 | 91577031 | 3 | chr16 | NT_010404 | AC116552 | 91725085 | 3 | 51202 | 0 | 0 | 51202 |
| S/G/Y/R/B/O |
NT_010404 | AC026467 | 91577031 | 3 | chr16 | NT_010404 | AC103884 | 91849076 | 1 | 22785 | 2046 | 4037 | 28868 |
| S/G/Y/R/B/O |
NT_010404 | AC026467 | 91577031 | 3 |   |   | AC022554 | 90941743 | 1 | 41152 | 1765 | 0 | 42917 |
| S/G/Y/R/B/O |
NT_010404 | AC116552 | 91725085 | 3 | chr16 | NT_010404 | AC103886 | 91847824 | 1 | 12404 | 1978 | 0 | 14382 |
| S/G/Y/R/B/O |
NT_010404 | AC116552 | 91725085 | 3 | chr16 | NT_010404 | AC103884 | 91849076 | 1 | 106396 | 13914 | 12192 | 132502 |
| S/G/Y/R/B/O |
NT_010404 | AC116552 | 91725085 | 3 |   |   | AC022554 | 91725085 | 1 | 122499 | 19859 | 4175 | 146533 |
| S/G/Y/R/B/O |
NT_010404 | AC103886 | 91847824 | 1 | chr16 | NT_010404 | AC103884 | 91849076 | 1 | 3709 | 0 | 3111 | 6820 |
| S/G/Y/R/B/O |
NT_010404 | AC103886 | 91847824 | 1 | chr16 | NT_010404 | AC009149 | 91944076 | 1 | 25147 | 0 | 1403 | 26550 |
| S/G/Y/R/B/O |
NT_010404 | AC103886 | 91847824 | 1 | chr16 | NT_010404 | AC021591 | 91878245 | 1 | 30153 | 9127 | 12780 | 52060 |
| S/G/Y/R/B/O |
NT_010404 | AC103886 | 91847824 | 1 | chr16 | NT_010404 | AC092384 | 91960356 | 2 | 11400 | 0 | 0 | 11400 |
| S/G/Y/R/B/O |
NT_010404 | AC103886 | 91847824 | 1 |   |   | AC074303 | 91878245 | 2 | 11369 | 0 | 0 | 11369 |
| S/G/Y/R/B/O |
NT_010404 | AC103884 | 91849076 | 1 | chr16 | NT_010404 | AC021591 | 91878245 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010404 | AC103884 | 91849076 | 1 | chr16 | NT_010404 | AC026467 | 91577031 | 3 | 22785 | 2046 | 4037 | 28868 |
| S/G/Y/R/B/O |
NT_010404 | AC103884 | 91849076 | 1 | chr16 | NT_010404 | AC116552 | 91725085 | 3 | 106396 | 13914 | 12192 | 132502 |
| S/G/Y/R/B/O |
NT_010404 | AC103884 | 91849076 | 1 |   |   | AC022554 | 91725085 | 1 | 36897 | 15528 | 8456 | 60881 |
| S/G/Y/R/B/O |
NT_010404 | AC021591 | 91878245 | 1 | chr16 | NT_010404 | AC009149 | 91944076 | 1 | 32178 | 1708 | 6166 | 40052 |
| S/G/Y/R/B/O |
NT_010404 | AC021591 | 91878245 | 1 | chr16 | NT_010404 | AC021125 | 91994636 | 1 | 10914 | 2648 | 6849 | 20411 |
| S/G/Y/R/B/O |
NT_010404 | AC021591 | 91878245 | 1 | chr16 | NT_010404 | AC092384 | 91960356 | 2 | 44970 | 1787 | 1372 | 48129 |
| S/G/Y/R/B/O |
NT_010404 | AC021591 | 91878245 | 1 | chr16 | NT_010404 | AC103886 | 91847824 | 1 | 30153 | 9127 | 12780 | 52060 |
| S/G/Y/R/B/O |
NT_010404 | AC021591 | 91878245 | 1 |   |   | AC074303 | 91994636 | 2 | 17448 | 0 | 1902 | 19350 |
| S/G/Y/R/B/O |
NT_010404 | AC009149 | 91944076 | 1 | chr16 | NT_010404 | AC092384 | 91960356 | 2 | 129834 | 4641 | 25296 | 159771 |
| S/G/Y/R/B/O |
NT_010404 | AC009149 | 91944076 | 1 | chr16 | NT_010404 | AC021125 | 91994636 | 1 | 23126 | 6937 | 21828 | 51891 |
| S/G/Y/R/B/O |
NT_010404 | AC009149 | 91944076 | 1 | chr16 | NT_010404 | AC103886 | 91847824 | 1 | 25147 | 0 | 1403 | 26550 |
| S/G/Y/R/B/O |
NT_010404 | AC009149 | 91944076 | 1 |   |   | AC074303 | 91878245 | 2 | 63831 | 5397 | 38119 | 107347 |
| S/G/Y/R/B/O |
NT_010404 | AC092384 | 91960356 | 2 | chr16 | NT_010404 | AC021125 | 91994636 | 1 | 70063 | 4130 | 73895 | 148088 |
| S/G/Y/R/B/O |
NT_010404 | AC092384 | 91960356 | 2 | chr16 | NT_010404 | AC021591 | 91878245 | 1 | 44970 | 1787 | 1372 | 48129 |
| S/G/Y/R/B/O |
NT_010404 | AC092384 | 91960356 | 2 | chr16 | NT_010404 | AC103886 | 91847824 | 1 | 11400 | 0 | 0 | 11400 |
| S/G/Y/R/B/O |
NT_010404 | AC092384 | 91960356 | 2 |   |   | AC074303 | 91878245 | 2 | 152594 | 1615 | 31992 | 186201 |
| S/G/Y/R/B/O |
NT_010404 | AC021125 | 91994636 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010404 | AC021125 | 91994636 | 1 | chr16 | NT_010404 | AC009149 | 91944076 | 1 | 23126 | 6937 | 21828 | 51891 |
| S/G/Y/R/B/O |
NT_010404 | AC021125 | 91994636 | 1 | chr16 | NT_010404 | AC021591 | 91878245 | 1 | 10914 | 2648 | 6849 | 20411 |
| S/G/Y/R/B/O |
NT_010404 | AC021125 | 91994636 | 1 |   |   | AC074303 | 91878245 | 2 | 43601 | 0 | 37380 | 80981 |
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