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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_024779 | AC020761 | 31696429 | 1 | chr16 | NT_024779 | AC027354 | 31710695 | 1 | 0 | 0 | 4815 | 4815 |
| S/G/Y/R/B/O |
NT_024779 | AC020761 | 31696429 | 1 | chr16 | NT_024779 | AC002042 | 31787017 | 1 | 33185 | 0 | 12975 | 46160 |
| S/G/Y/R/B/O |
NT_024779 | AC020761 | 31696429 | 1 | chr16 | NT_024779 | AC009091 | 31773228 | 2 | 34143 | 0 | 4713 | 38856 |
| S/G/Y/R/B/O |
NT_024779 | AC027354 | 31710695 | 1 | chr16 | NT_024779 | AC009091 | 31773228 | 2 | 0 | 0 | 4810 | 4810 |
| S/G/Y/R/B/O |
NT_024779 | AC009091 | 31773228 | 2 | chr16 | NT_024779 | AC002042 | 31787017 | 1 | 51143 | 0 | 0 | 51143 |
| S/G/Y/R/B/O |
NT_024779 | AC009091 | 31773228 | 2 | chr16 | NT_024779 | AC007882 | 32673672 | 3 | 10415 | 0 | 0 | 10415 |
| S/G/Y/R/B/O |
NT_024779 | AC009091 | 31773228 | 2 | chr16 | NT_024779 | AC007908 | 32909958 | 1 | 10489 | 0 | 0 | 10489 |
| S/G/Y/R/B/O |
NT_024779 | AC009091 | 31773228 | 2 | chr16 | NT_024779 | AC020761 | 31696429 | 1 | 34143 | 0 | 4713 | 38856 |
| S/G/Y/R/B/O |
NT_024779 | AC009091 | 31773228 | 2 | chr16 | NT_024779 | AC027509 | 32293813 | 1 | 35081 | 0 | 0 | 35081 |
| S/G/Y/R/B/O |
NT_024779 | AC009091 | 31773228 | 2 | chr16 | NT_024779 | U91320 | 32603624 | 3 | 10507 | 0 | 0 | 10507 |
| S/G/Y/R/B/O |
NT_024779 | AC009091 | 31773228 | 2 |   |   | AC024036 | 31696429 | 1 | 14479 | 2813 | 17691 | 34983 |
| S/G/Y/R/B/O |
NT_024779 | AC002042 | 31787017 | 1 | chr16 | NT_024779 | AC092342 | 31831802 | 3 | 30540 | 0 | 0 | 30540 |
| S/G/Y/R/B/O |
NT_024779 | AC002042 | 31787017 | 1 | chr16 | NT_024779 | AC020761 | 31696429 | 1 | 33185 | 0 | 12975 | 46160 |
| S/G/Y/R/B/O |
NT_024779 | AC002042 | 31787017 | 1 |   |   | AC022264 | 31696429 | 1 | 29242 | 0 | 1137 | 30379 |
| S/G/Y/R/B/O |
NT_024779 | AC002042 | 31787017 | 1 |   |   | AC024036 | 31696429 | 1 | 43857 | 6480 | 46667 | 97004 |
| S/G/Y/R/B/O |
NT_024779 | AC092342 | 31831802 | 3 | chr16 | NT_024779 | AC007028 | 32002126 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024779 | AC092342 | 31831802 | 3 |   |   | AC022264 | 31787017 | 1 | 108170 | 0 | 30520 | 138690 |
| S/G/Y/R/B/O |
NT_024779 | AC092342 | 31831802 | 3 |   |   | AC036220 | 31787017 | 1 | 58683 | 1883 | 0 | 60566 |
| S/G/Y/R/B/O |
NT_024779 | AC092342 | 31831802 | 3 |   |   | AC044899 | 31787017 | 1 | 58696 | 0 | 0 | 58696 |
| S/G/Y/R/B/O |
NT_024779 | AC007028 | 32002126 | 3 | chr16 | NT_024779 | AC009057 | 32131273 | 3 | 37234 | 0 | 0 | 37234 |
| S/G/Y/R/B/O |
NT_024779 | AC007028 | 32002126 | 3 |   |   | AC004529 | 31787017 | 1 | 33645 | 0 | 0 | 33645 |
| S/G/Y/R/B/O |
NT_024779 | AC007028 | 32002126 | 3 |   |   | AC022264 | 32131273 | 1 | 68849 | 0 | 0 | 68849 |
| S/G/Y/R/B/O |
NT_024779 | AC007028 | 32002126 | 3 |   |   | AC036220 | 32131273 | 1 | 100640 | 4223 | 5973 | 110836 |
| S/G/Y/R/B/O |
NT_024779 | AC007028 | 32002126 | 3 |   |   | AC044899 | 32131273 | 1 | 102715 | 8151 | 3848 | 114714 |
| S/G/Y/R/B/O |
NT_024779 | AC007028 | 32002126 | 3 |   |   | AC092277 | 32131273 | 1 | 11543 | 0 | 10447 | 21990 |
| S/G/Y/R/B/O |
NT_024779 | AC009057 | 32131273 | 3 | chr16 | NT_024779 | AC027509 | 32293813 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024779 | AC009057 | 32131273 | 3 | chr16 | NT_024812 | AC006352 | 31493194 | 3 | 40953 | 0 | 0 | 40953 |
| S/G/Y/R/B/O |
NT_024779 | AC009057 | 32131273 | 3 |   |   | AC004529 | 32131273 | 1 | 46454 | 0 | 63109 | 109563 |
| S/G/Y/R/B/O |
NT_024779 | AC009057 | 32131273 | 3 |   |   | AC068199 | 32002126 | 1 | 52683 | 4096 | 24583 | 81362 |
| S/G/Y/R/B/O |
NT_024779 | AC009057 | 32131273 | 3 |   |   | AC092277 | 32002126 | 1 | 76328 | 0 | 10440 | 86768 |
| S/G/Y/R/B/O |
NT_024779 | AC009057 | 32131273 | 3 |   |   | U41302 | 32002126 | 3 | 32485 | 0 | 0 | 32485 |
| S/G/Y/R/B/O |
NT_024779 | AC027509 | 32293813 | 1 | chr16 | NT_024779 | AC002307 | 32411679 | 3 | 60072 | 2422 | 25626 | 88120 |
| S/G/Y/R/B/O |
NT_024779 | AC027509 | 32293813 | 1 | chr16 | NT_024779 | AC009091 | 31773228 | 2 | 35081 | 0 | 0 | 35081 |
| S/G/Y/R/B/O |
NT_024779 | AC002307 | 32411679 | 3 | chr16 | NT_024779 | AC114938 | 32563064 | 1 | 44192 | 0 | 0 | 44192 |
| S/G/Y/R/B/O |
NT_024779 | AC114938 | 32563064 | 1 | chr16 | NT_024779 | U91320 | 32603624 | 3 | 0 | 0 | 25150 | 25150 |
| S/G/Y/R/B/O |
NT_024779 | U91320 | 32603624 | 3 | chr16 | NT_024779 | AC007882 | 32673672 | 3 | 45947 | 0 | 0 | 45947 |
| S/G/Y/R/B/O |
NT_024779 | U91320 | 32603624 | 3 | chr16 | NT_024779 | AC007908 | 32909958 | 1 | 43936 | 0 | 0 | 43936 |
| S/G/Y/R/B/O |
NT_024779 | U91320 | 32603624 | 3 | chr16 | NT_024779 | AC009091 | 31773228 | 2 | 10507 | 0 | 0 | 10507 |
| S/G/Y/R/B/O |
NT_024779 | AC007882 | 32673672 | 3 | chr16 | NT_024779 | AC002041 | 32841398 | 3 | 165721 | 0 | 0 | 165721 |
| S/G/Y/R/B/O |
NT_024779 | AC007882 | 32673672 | 3 | chr16 | NT_024779 | AC007908 | 32909958 | 1 | 98158 | 5175 | 79297 | 182630 |
| S/G/Y/R/B/O |
NT_024779 | AC007882 | 32673672 | 3 | chr16 | NT_024779 | AC009091 | 31773228 | 2 | 10415 | 0 | 0 | 10415 |
| S/G/Y/R/B/O |
NT_024779 | AC002041 | 32841398 | 3 | chr16 | NT_024779 | AC007908 | 32909958 | 1 | 112356 | 5173 | 15901 | 133430 |
| S/G/Y/R/B/O |
NT_024779 | AC002041 | 32841398 | 3 |   |   | AC010539 | 49617851 | 2 | 49834 | 0 | 0 | 49834 |
| S/G/Y/R/B/O |
NT_024779 | AC002041 | 32841398 | 3 |   |   | U41302 | 31696429 | 3 | 32035 | 0 | 0 | 32035 |
| S/G/Y/R/B/O |
NT_024779 | AC007908 | 32909958 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_024779 | AC007908 | 32909958 | 1 | chr16 | NT_024812 | AC006352 | 31493194 | 3 | 16113 | 0 | 1740 | 17853 |
| S/G/Y/R/B/O |
NT_024779 | AC007908 | 32909958 | 1 | chr16 | NT_024779 | AC007882 | 32673672 | 3 | 98158 | 5175 | 79297 | 182630 |
| S/G/Y/R/B/O |
NT_024779 | AC007908 | 32909958 | 1 | chr16 | NT_024779 | AC009091 | 31773228 | 2 | 10489 | 0 | 0 | 10489 |
| S/G/Y/R/B/O |
NT_024779 | AC007908 | 32909958 | 1 | chr16 | NT_024779 | U91320 | 32603624 | 3 | 43936 | 0 | 0 | 43936 |
| S/G/Y/R/B/O |
NT_024779 | AC007908 | 32909958 | 1 |   |   | AC010539 | 31773228 | 2 | 46355 | 1745 | 6211 | 54311 |
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