Chromosome 16 - Clone Overlaps

Chromosome 16 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_033286	NT_033283	NT_010384	NT_031905	NT_033285	NT_010419	NT_010393	NT_033288
NT_033281	NT_030837	NT_010552	NT_010530	NT_024776	NT_010441	NT_010591	NT_033284
NT_010604	NT_010589	NT_024802	NT_024812	NT_024779	NT_033282	NT_024773	NT_010505
NT_010493	NT_010498	NT_034002	NT_033291	NT_010463	NT_033904	NT_034001	NT_010546
NT_033289	NT_010480	NT_031902	NT_030154	NT_010635	NT_010478	NT_010494	NT_024797
NT_010422	NT_024767	NT_033290	NT_028371	NT_024788	NT_019609	NT_033287	NT_010404
NT_010542

NT_010441

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_010441	AC002287	20872570	3	chr16	NT_010441	AC003661	21050682	3	10523	0	0	10523
S/G/Y/R/B/O	NT_010441	AC002287	20872570	3			AC027102	21050682	1	84820	19090	926	104836
S/G/Y/R/B/O	NT_010441	AC003661	21050682	3	chr16	NT_010441	AC009021	21152487	3	4886	0	0	4886
S/G/Y/R/B/O	NT_010441	AC003661	21050682	3			AC009150	21152487	2	82418	0	712	83130
S/G/Y/R/B/O	NT_010441	AC003661	21050682	3			AC027102	21152487	1	39335	2017	10774	52126
S/G/Y/R/B/O	NT_010441	AC009021	21152487	3	chr16	NT_010441	AC106788	21323613	3	0	0	0	0
S/G/Y/R/B/O	NT_010441	AC009021	21152487	3	chr16	NT_010441	AC092719	23017361	3	11433	0	0	11433
S/G/Y/R/B/O	NT_010441	AC009021	21152487	3			AC009150	21050682	2	103405	2608	5880	111893
S/G/Y/R/B/O	NT_010441	AC009021	21152487	3			AC019092	21050682	1	92785	6679	31621	131085
S/G/Y/R/B/O	NT_010441	AC009021	21152487	3			AC106826	23017361	1	42793	0	42916	85709
S/G/Y/R/B/O	NT_010441	AC106788	21323613	3	chr16	NT_010441	AC092338	21487568	3	0	0	0	0
S/G/Y/R/B/O	NT_010441	AC106788	21323613	3	chr16	NT_010441	AC068150	23453979	1	45108	8244	0	53352
S/G/Y/R/B/O	NT_010441	AC106788	21323613	3	chr16	NT_010441	AC092119	23371037	2	19163	0	18193	37356
S/G/Y/R/B/O	NT_010441	AC106788	21323613	3			AC008864	23017361	2	24004	2918	0	26922
S/G/Y/R/B/O	NT_010441	AC106788	21323613	3			AC009124	23017361	2	14233	8526	31760	54519
S/G/Y/R/B/O	NT_010441	AC106788	21323613	3			AC017077	23017361	1	78672	0	24048	102720
S/G/Y/R/B/O	NT_010441	AC106788	21323613	3			AC019092	23017361	1	31408	7282	2213	40903
S/G/Y/R/B/O	NT_010441	AC106788	21323613	3			AC022147	11503506	1	20867	0	7764	28631
S/G/Y/R/B/O	NT_010441	AC106788	21323613	3			AC023463	11503506	1	26840	1535	0	28375
S/G/Y/R/B/O	NT_010441	AC106788	21323613	3			AC069176	23453979	1	66151	0	4721	70872
S/G/Y/R/B/O	NT_010441	AC106788	21323613	3			AC092285	5259960	1	36059	2647	14628	53334
S/G/Y/R/B/O	NT_010441	AC106788	21323613	3			AC106826	23327777	1	86784	0	0	86784
S/G/Y/R/B/O	NT_010441	AC106788	21323613	3			AL450123	23327777	1	10315	6618	0	16933
S/G/Y/R/B/O	NT_010441	AC092338	21487568	3	chr16	NT_010441	AC009034	21610849	3	19842	0	0	19842
S/G/Y/R/B/O	NT_010441	AC092338	21487568	3			AC021336	21610849	1	33279	0	2428	35707
S/G/Y/R/B/O	NT_010441	AC009034	21610849	3	chr16	NT_010441	AC009019	21715881	3	61386	0	0	61386
S/G/Y/R/B/O	NT_010441	AC009034	21610849	3			AC021336	60930609	1	97486	17044	9228	123758
S/G/Y/R/B/O	NT_010441	AC009019	21715881	3	chr16	NT_010441	L76568	21895768	3	0	0	0	0
S/G/Y/R/B/O	NT_010441	AC009019	21715881	3	chr16	NT_010441	AC092119	23371037	2	19483	0	0	19483
S/G/Y/R/B/O	NT_010441	AC009019	21715881	3			AC021336	60930609	1	24697	2893	5870	33460
S/G/Y/R/B/O	NT_010441	L76568	21895768	3	chr16	NT_010441	AC027346	21931509	1	0	0	1161	1161
S/G/Y/R/B/O	NT_010441	L76568	21895768	3			AF491814	21931509	3	29746	0	0	29746
S/G/Y/R/B/O	NT_010441	AC027346	21931509	1	chr16	NT_010441	AC003034	21942599	3	11409	0	0	11409
S/G/Y/R/B/O	NT_010441	AC003034	21942599	3	chr16	NT_010441	AC020926	22025482	3	19074	0	0	19074
S/G/Y/R/B/O	NT_010441	AC003034	21942599	3			AC025829	22025482	1	15345	2596	0	17941
S/G/Y/R/B/O	NT_010441	AC020926	22025482	3	chr16	NT_010441	AC004381	22099648	3	74094	0	0	74094
S/G/Y/R/B/O	NT_010441	AC020926	22025482	3			AC024562	22099648	1	13734	4429	28175	46338
S/G/Y/R/B/O	NT_010441	AC020926	22025482	3			AC025829	22099648	1	67257	5001	0	72258
S/G/Y/R/B/O	NT_010441	AC004381	22099648	3	chr16	NT_010441	AC002394	22239034	3	2441	0	0	2441
S/G/Y/R/B/O	NT_010441	AC004381	22099648	3			AC025829	22025482	1	124431	4253	15298	143982
S/G/Y/R/B/O	NT_010441	AC002394	22239034	3	chr16	NT_010441	AC105410	22344503	3	56726	0	0	56726
S/G/Y/R/B/O	NT_010441	AC002394	22239034	3			AC025080	22099648	1	24002	4293	3248	31543
S/G/Y/R/B/O	NT_010441	AC105410	22344503	3	chr16	NT_010441	AC008551	22421600	3	23571	0	0	23571
S/G/Y/R/B/O	NT_010441	AC105410	22344503	3			AC025080	22421600	1	67945	15895	3248	87088
S/G/Y/R/B/O	NT_010441	AC008551	22421600	3	chr16	NT_010441	AF001550	22558156	3	43710	0	0	43710
S/G/Y/R/B/O	NT_010441	AC008551	22421600	3			AC025080	22421600	1	64556	0	7625	72181
S/G/Y/R/B/O	NT_010441	AF001550	22558156	3	chr16	NT_010441	AC008740	22688304	3	0	0	0	0
S/G/Y/R/B/O	NT_010441	AF001550	22558156	3			AC008864	22421600	2	13260	0	0	13260
S/G/Y/R/B/O	NT_010441	AF001550	22558156	3			AC023463	22421600	1	38155	1992	0	40147
S/G/Y/R/B/O	NT_010441	AC008740	22688304	3	chr16	NT_010441	AC003007	22808677	3	23317	0	0	23317
S/G/Y/R/B/O	NT_010441	AC008740	22688304	3	chr16	NT_033291	AC009086	57980378	3	40547	0	0	40547
S/G/Y/R/B/O	NT_010441	AC008740	22688304	3	chr16	NT_010441	AC068150	23453979	1	12668	0	0	12668
S/G/Y/R/B/O	NT_010441	AC008740	22688304	3			AC008864	22808677	2	130281	2917	0	133198
S/G/Y/R/B/O	NT_010441	AC008740	22688304	3			AC009124	57980378	2	25834	2816	13660	42310
S/G/Y/R/B/O	NT_010441	AC008740	22688304	3			AC017077	57980378	1	27047	0	0	27047
S/G/Y/R/B/O	NT_010441	AC008740	22688304	3			AC022147	11503506	1	20864	0	3994	24858
S/G/Y/R/B/O	NT_010441	AC008740	22688304	3			AC023463	11503506	1	86938	8337	13960	109235
S/G/Y/R/B/O	NT_010441	AC008740	22688304	3			AC069176	23453979	1	92601	0	10316	102917
S/G/Y/R/B/O	NT_010441	AC008740	22688304	3			AC106826	23327777	1	17040	0	0	17040
S/G/Y/R/B/O	NT_010441	AC003007	22808677	3	chr16	NT_010441	AC005632	22922593	3	105825	0	0	105825
S/G/Y/R/B/O	NT_010441	AC003007	22808677	3	chr16	NT_010441	AC068150	23453979	1	39738	5347	0	45085
S/G/Y/R/B/O	NT_010441	AC003007	22808677	3	chr16	NT_010441	AC092119	23371037	2	19149	0	18205	37354
S/G/Y/R/B/O	NT_010441	AC003007	22808677	3			AC009124	22688304	2	38052	10196	23605	71853
S/G/Y/R/B/O	NT_010441	AC003007	22808677	3			AC017077	22688304	1	38293	0	0	38293
S/G/Y/R/B/O	NT_010441	AC003007	22808677	3			AC023463	22688304	1	10358	0	4022	14380
S/G/Y/R/B/O	NT_010441	AC003007	22808677	3			AC069176	23453979	1	46536	0	4012	50548
S/G/Y/R/B/O	NT_010441	AC003007	22808677	3			AC092285	23371037	1	36063	0	17273	53336
S/G/Y/R/B/O	NT_010441	AC003007	22808677	3			AL450123	23327777	1	10366	2265	2110	14741
S/G/Y/R/B/O	NT_010441	AC005632	22922593	3	chr16	NT_010441	AC092719	23017361	3	0	0	0	0
S/G/Y/R/B/O	NT_010441	AC005632	22922593	3	chr16	NT_010441	AC068150	23453979	1	39738	5301	0	45039
S/G/Y/R/B/O	NT_010441	AC005632	22922593	3	chr16	NT_010441	AC092119	23371037	2	19148	0	18197	37345
S/G/Y/R/B/O	NT_010441	AC005632	22922593	3			AC009124	22808677	2	27868	10210	26551	64629
S/G/Y/R/B/O	NT_010441	AC005632	22922593	3			AC017077	22808677	1	38294	0	0	38294
S/G/Y/R/B/O	NT_010441	AC005632	22922593	3			AC022147	22808677	1	42144	0	24812	66956
S/G/Y/R/B/O	NT_010441	AC005632	22922593	3			AC023463	22808677	1	10358	0	0	10358
S/G/Y/R/B/O	NT_010441	AC005632	22922593	3			AC069176	23453979	1	36784	0	0	36784
S/G/Y/R/B/O	NT_010441	AC005632	22922593	3			AC092285	23371037	1	36064	0	17273	53337
S/G/Y/R/B/O	NT_010441	AC005632	22922593	3			AJ278581	23327777	3	40462	0	0	40462
S/G/Y/R/B/O	NT_010441	AC005632	22922593	3			AL450123	23327777	1	10365	2265	2110	14740
S/G/Y/R/B/O	NT_010441	AC092719	23017361	3	chr16	NT_010441	AF001549	23162008	3	116006	0	0	116006
S/G/Y/R/B/O	NT_010441	AC092719	23017361	3	chr16	NT_010441	AC009021	21152487	3	11433	0	0	11433
S/G/Y/R/B/O	NT_010441	AC092719	23017361	3			AC017077	21152487	1	19704	0	10743	30447
S/G/Y/R/B/O	NT_010441	AC092719	23017361	3			AC019092	21152487	1	20153	0	0	20153
S/G/Y/R/B/O	NT_010441	AC092719	23017361	3			AC020759	21152487	2	36993	0	105405	142398
S/G/Y/R/B/O	NT_010441	AC092719	23017361	3			AC106826	29618763	1	41841	0	0	41841
S/G/Y/R/B/O	NT_010441	AC092719	23017361	3			AJ278581	23162008	3	60785	0	0	60785
S/G/Y/R/B/O	NT_010441	AF001549	23162008	3	chr16	NT_010441	AC092375	23247886	3	92299	0	0	92299
S/G/Y/R/B/O	NT_010441	AF001549	23162008	3			AC008864	23162008	2	24067	0	0	24067
S/G/Y/R/B/O	NT_010441	AF001549	23162008	3			AC017077	23162008	1	85030	2258	16952	104240
S/G/Y/R/B/O	NT_010441	AF001549	23162008	3			AC019092	23162008	1	24937	4571	2579	32087
S/G/Y/R/B/O	NT_010441	AF001549	23162008	3			AC022147	11503506	1	16248	0	12830	29078
S/G/Y/R/B/O	NT_010441	AF001549	23162008	3			AC023463	11503506	1	13065	2077	3400	18542
S/G/Y/R/B/O	NT_010441	AF001549	23162008	3			AC069176	58853965	1	14272	0	0	14272
S/G/Y/R/B/O	NT_010441	AF001549	23162008	3			AC106826	23017361	1	13705	0	0	13705
S/G/Y/R/B/O	NT_010441	AC092375	23247886	3	chr16	NT_010441	AC106782	23327777	1	0	0	3019	3019
S/G/Y/R/B/O	NT_010441	AC092375	23247886	3	chr16	NT_010441	AC068150	23453979	1	16294	8268	10102	34664
S/G/Y/R/B/O	NT_010441	AC092375	23247886	3	chr16	NT_010441	AC092119	23371037	2	39098	0	18270	57368
S/G/Y/R/B/O	NT_010441	AC092375	23247886	3			AC008864	23017361	2	24073	2903	0	26976
S/G/Y/R/B/O	NT_010441	AC092375	23247886	3			AC009124	23017361	2	14213	8701	23477	46391
S/G/Y/R/B/O	NT_010441	AC092375	23247886	3			AC017077	23017361	1	123900	2258	6191	132349
S/G/Y/R/B/O	NT_010441	AC092375	23247886	3			AC022147	11503506	1	25664	0	9061	34725
S/G/Y/R/B/O	NT_010441	AC092375	23247886	3			AC023463	11503506	1	28264	0	16452	44716
S/G/Y/R/B/O	NT_010441	AC092375	23247886	3			AC069176	23453979	1	71019	0	4082	75101
S/G/Y/R/B/O	NT_010441	AC092375	23247886	3			AC092285	23371037	1	44750	2654	16013	63417
S/G/Y/R/B/O	NT_010441	AC092375	23247886	3			AC106826	23327777	1	16999	0	0	16999
S/G/Y/R/B/O	NT_010441	AC106782	23327777	1	chr16	NT_010441	AC092119	23371037	2	0	0	2910	2910
S/G/Y/R/B/O	NT_010441	AC106782	23327777	1	chr16	NT_033291	AC009086	57980378	3	20519	0	32439	52958
S/G/Y/R/B/O	NT_010441	AC106782	23327777	1	chr16	NT_033291	AC012645	58155742	3	64305	0	0	64305
S/G/Y/R/B/O	NT_010441	AC106782	23327777	1			AC008864	22688304	2	23905	0	0	23905
S/G/Y/R/B/O	NT_010441	AC106782	23327777	1			AC017077	58155742	1	26897	0	9099	35996
S/G/Y/R/B/O	NT_010441	AC106782	23327777	1			AC022147	11503506	1	16999	0	11494	28493
S/G/Y/R/B/O	NT_010441	AC106782	23327777	1			AC023463	11503506	1	13026	0	23996	37022
S/G/Y/R/B/O	NT_010441	AC106782	23327777	1			AC069176	23453979	1	14237	0	4066	18303
S/G/Y/R/B/O	NT_010441	AC106782	23327777	1			AC106826	21323613	1	16967	0	0	16967
S/G/Y/R/B/O	NT_010441	AC092119	23371037	2	chr16	NT_010441	AC068150	23453979	1	54800	7765	10116	72681
S/G/Y/R/B/O	NT_010441	AC092119	23371037	2	chr16	NT_010441	AC003007	22808677	3	19149	0	18205	37354
S/G/Y/R/B/O	NT_010441	AC092119	23371037	2	chr16	NT_010441	AC005632	22922593	3	19148	0	18197	37345
S/G/Y/R/B/O	NT_010441	AC092119	23371037	2	chr16	NT_010441	AC009019	21715881	3	19483	0	0	19483
S/G/Y/R/B/O	NT_010441	AC092119	23371037	2	chr16	NT_010441	AC092375	23247886	3	39098	0	18270	57368
S/G/Y/R/B/O	NT_010441	AC092119	23371037	2	chr16	NT_010441	AC106788	21323613	3	19163	0	18193	37356
S/G/Y/R/B/O	NT_010441	AC092119	23371037	2			AC069176	23453979	1	18582	0	0	18582
S/G/Y/R/B/O	NT_010441	AC092119	23371037	2			AC092285	23453979	1	46870	4631	15954	67455
S/G/Y/R/B/O	NT_010441	AC068150	23453979	1
S/G/Y/R/B/O	NT_010441	AC068150	23453979	1	chr16	NT_010441	AC003007	22808677	3	39738	5347	0	45085
S/G/Y/R/B/O	NT_010441	AC068150	23453979	1	chr16	NT_010441	AC005632	22922593	3	39738	5301	0	45039
S/G/Y/R/B/O	NT_010441	AC068150	23453979	1	chr16	NT_010441	AC008740	22688304	3	12668	0	0	12668
S/G/Y/R/B/O	NT_010441	AC068150	23453979	1	chr16	NT_010441	AC092375	23247886	3	16294	8268	10102	34664
S/G/Y/R/B/O	NT_010441	AC068150	23453979	1	chr16	NT_010441	AC106788	21323613	3	45108	8244	0	53352
S/G/Y/R/B/O	NT_010441	AC068150	23453979	1			AC017077	57980378	1	23514	0	0	23514
S/G/Y/R/B/O	NT_010441	AC068150	23453979	1			AC069176	57980378	1	28417	2924	0	31341
S/G/Y/R/B/O	NT_010441	AC068150	23453979	1			AC092285	23371037	1	13829	7620	16046	37495