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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010494 | AC021880 | 79852435 | 1 | chr16 | NT_010494 | AC007411 | 79855059 | 1 | 7045 | 16792 | 4838 | 28675 |
| S/G/Y/R/B/O |
NT_010494 | AC021880 | 79852435 | 1 | chr16 | NT_010494 | AC009148 | 79865861 | 3 | 81492 | 0 | 0 | 81492 |
| S/G/Y/R/B/O |
NT_010494 | AC021880 | 79852435 | 1 | chr16 | NT_010494 | AC092135 | 80056263 | 2 | 54867 | 0 | 0 | 54867 |
| S/G/Y/R/B/O |
NT_010494 | AC021880 | 79852435 | 1 |   |   | AC021116 | 79865861 | 1 | 38384 | 2141 | 8004 | 48529 |
| S/G/Y/R/B/O |
NT_010494 | AC021880 | 79852435 | 1 |   |   | AC092139 | 80056263 | 3 | 187931 | 0 | 2465 | 190396 |
| S/G/Y/R/B/O |
NT_010494 | AC021880 | 79852435 | 1 |   |   | AL645494 | 80056263 | 1 | 65909 | 2141 | 14090 | 82140 |
| S/G/Y/R/B/O |
NT_010494 | AC007411 | 79855059 | 1 | chr16 | NT_010494 | AC009148 | 79865861 | 3 | 7050 | 10176 | 4905 | 22131 |
| S/G/Y/R/B/O |
NT_010494 | AC007411 | 79855059 | 1 | chr16 | NT_010494 | AC092135 | 80056263 | 2 | 30236 | 15007 | 2765 | 48008 |
| S/G/Y/R/B/O |
NT_010494 | AC007411 | 79855059 | 1 | chr16 | NT_010494 | AC099483 | 80238658 | 1 | 19776 | 14915 | 0 | 34691 |
| S/G/Y/R/B/O |
NT_010494 | AC007411 | 79855059 | 1 |   |   | AC021116 | 79865861 | 1 | 10451 | 14419 | 10173 | 35043 |
| S/G/Y/R/B/O |
NT_010494 | AC007411 | 79855059 | 1 |   |   | AC092139 | 80056263 | 3 | 22033 | 17579 | 4922 | 44534 |
| S/G/Y/R/B/O |
NT_010494 | AC007411 | 79855059 | 1 |   |   | AL645494 | 80238658 | 1 | 10395 | 12323 | 10168 | 32886 |
| S/G/Y/R/B/O |
NT_010494 | AC009148 | 79865861 | 3 | chr16 | NT_010494 | AC092135 | 80056263 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010494 | AC009148 | 79865861 | 3 | chr16 | NT_010494 | AC021880 | 79852435 | 1 | 81492 | 0 | 0 | 81492 |
| S/G/Y/R/B/O |
NT_010494 | AC009148 | 79865861 | 3 |   |   | AC021116 | 79855059 | 1 | 67291 | 0 | 5156 | 72447 |
| S/G/Y/R/B/O |
NT_010494 | AC009148 | 79865861 | 3 |   |   | AC092139 | 79852435 | 3 | 90596 | 0 | 0 | 90596 |
| S/G/Y/R/B/O |
NT_010494 | AC009148 | 79865861 | 3 |   |   | AL645494 | 79852435 | 1 | 70506 | 0 | 7529 | 78035 |
| S/G/Y/R/B/O |
NT_010494 | AC092135 | 80056263 | 2 | chr16 | NT_010494 | AC099480 | 80133455 | 2 | 89621 | 0 | 0 | 89621 |
| S/G/Y/R/B/O |
NT_010494 | AC092135 | 80056263 | 2 | chr16 | NT_010494 | AC007411 | 79855059 | 1 | 30236 | 15007 | 2765 | 48008 |
| S/G/Y/R/B/O |
NT_010494 | AC092135 | 80056263 | 2 | chr16 | NT_010494 | AC021880 | 79852435 | 1 | 54867 | 0 | 0 | 54867 |
| S/G/Y/R/B/O |
NT_010494 | AC092135 | 80056263 | 2 | chr16 | NT_010494 | AC099483 | 80238658 | 1 | 14777 | 1839 | 46961 | 63577 |
| S/G/Y/R/B/O |
NT_010494 | AC092135 | 80056263 | 2 |   |   | AC021116 | 79855059 | 1 | 25816 | 0 | 33577 | 59393 |
| S/G/Y/R/B/O |
NT_010494 | AC092135 | 80056263 | 2 |   |   | AC092139 | 79852435 | 3 | 74966 | 0 | 0 | 74966 |
| S/G/Y/R/B/O |
NT_010494 | AC092135 | 80056263 | 2 |   |   | AL645494 | 80238658 | 1 | 39024 | 0 | 33683 | 72707 |
| S/G/Y/R/B/O |
NT_010494 | AC099480 | 80133455 | 2 | chr16 | NT_010494 | AC099483 | 80238658 | 1 | 45189 | 1839 | 16599 | 63627 |
| S/G/Y/R/B/O |
NT_010494 | AC099483 | 80238658 | 1 | chr16 | NT_010494 | AC009100 | 80279536 | 2 | 2880 | 0 | 0 | 2880 |
| S/G/Y/R/B/O |
NT_010494 | AC099483 | 80238658 | 1 | chr16 | NT_010494 | AC007411 | 79855059 | 1 | 19776 | 14915 | 0 | 34691 |
| S/G/Y/R/B/O |
NT_010494 | AC099483 | 80238658 | 1 | chr16 | NT_010494 | AC092135 | 80056263 | 2 | 14777 | 1839 | 46961 | 63577 |
| S/G/Y/R/B/O |
NT_010494 | AC009100 | 80279536 | 2 | chr16 | NT_010494 | AC099524 | 80292569 | 2 | 11572 | 2210 | 0 | 13782 |
| S/G/Y/R/B/O |
NT_010494 | AC099524 | 80292569 | 2 | chr16 | NT_010494 | AC098966 | 80355435 | 3 | 0 | 0 | 110057 | 110057 |
| S/G/Y/R/B/O |
NT_010494 | AC098966 | 80355435 | 3 | chr16 | NT_010494 | AC092142 | 80520359 | 3 | 22421 | 0 | 0 | 22421 |
| S/G/Y/R/B/O |
NT_010494 | AC092142 | 80520359 | 3 | chr16 | NT_010494 | AC009140 | 80675161 | 3 | 27931 | 0 | 0 | 27931 |
| S/G/Y/R/B/O |
NT_010494 | AC092142 | 80520359 | 3 |   |   | AC084796 | 80675161 | 1 | 27897 | 6851 | 21244 | 55992 |
| S/G/Y/R/B/O |
NT_010494 | AC009140 | 80675161 | 3 | chr16 | NT_010494 | AC092294 | 80786330 | 1 | 55864 | 0 | 0 | 55864 |
| S/G/Y/R/B/O |
NT_010494 | AC009140 | 80675161 | 3 |   |   | AC084796 | 80355435 | 1 | 52545 | 0 | 8869 | 61414 |
| S/G/Y/R/B/O |
NT_010494 | AC092294 | 80786330 | 1 | chr16 | NT_010494 | AC009028 | 80797886 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010494 | AC092294 | 80786330 | 1 | chr16 | NT_010494 | AC005199 | 82012658 | 3 | 29138 | 0 | 0 | 29138 |
| S/G/Y/R/B/O |
NT_010494 | AC092294 | 80786330 | 1 | chr16 | NT_010494 | AC024590 | 81390397 | 1 | 91088 | 2837 | 0 | 93925 |
| S/G/Y/R/B/O |
NT_010494 | AC009028 | 80797886 | 3 | chr16 | NT_010494 | AC099506 | 80926612 | 2 | 37449 | 0 | 0 | 37449 |
| S/G/Y/R/B/O |
NT_010494 | AC009028 | 80797886 | 3 |   |   | AC021787 | 7105904 | 1 | 28270 | 0 | 0 | 28270 |
| S/G/Y/R/B/O |
NT_010494 | AC099506 | 80926612 | 2 | chr16 | NT_010494 | AC092351 | 81098090 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010494 | AC099506 | 80926612 | 2 |   |   | AC021787 | 80797886 | 1 | 182222 | 2410 | 1059 | 185691 |
| S/G/Y/R/B/O |
NT_010494 | AC092351 | 81098090 | 3 | chr16 | NT_010494 | AC009117 | 81256301 | 3 | 41318 | 0 | 0 | 41318 |
| S/G/Y/R/B/O |
NT_010494 | AC092351 | 81098090 | 3 | chr16 | NT_010494 | AC011656 | 81430831 | 1 | 22965 | 2085 | 11956 | 37006 |
| S/G/Y/R/B/O |
NT_010494 | AC092351 | 81098090 | 3 |   |   | AC012424 | 81430831 | 1 | 25888 | 43210 | 13182 | 82280 |
| S/G/Y/R/B/O |
NT_010494 | AC092351 | 81098090 | 3 |   |   | AC021787 | 81430831 | 1 | 15793 | 0 | 0 | 15793 |
| S/G/Y/R/B/O |
NT_010494 | AC009117 | 81256301 | 3 | chr16 | NT_010494 | AC098803 | 81387849 | 3 | 0 | 1065 | 0 | 1065 |
| S/G/Y/R/B/O |
NT_010494 | AC009117 | 81256301 | 3 | chr16 | NT_010494 | AC011656 | 81430831 | 1 | 38856 | 2491 | 97274 | 138621 |
| S/G/Y/R/B/O |
NT_010494 | AC098803 | 81387849 | 3 | chr16 | NT_010494 | AC024590 | 81390397 | 1 | 0 | 897 | 0 | 897 |
| S/G/Y/R/B/O |
NT_010494 | AC024590 | 81390397 | 1 | chr16 | NT_010494 | AC011656 | 81430831 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010494 | AC024590 | 81390397 | 1 | chr16 | NT_010494 | AC005199 | 82012658 | 3 | 32523 | 0 | 1081 | 33604 |
| S/G/Y/R/B/O |
NT_010494 | AC024590 | 81390397 | 1 | chr16 | NT_010494 | AC092294 | 80786330 | 1 | 91088 | 2837 | 0 | 93925 |
| S/G/Y/R/B/O |
NT_010494 | AC011656 | 81430831 | 1 | chr16 | NT_010494 | AC106736 | 81431104 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010494 | AC011656 | 81430831 | 1 | chr16 | NT_010494 | AC009117 | 81256301 | 3 | 38856 | 2491 | 97274 | 138621 |
| S/G/Y/R/B/O |
NT_010494 | AC011656 | 81430831 | 1 | chr16 | NT_010494 | AC092351 | 81098090 | 3 | 22965 | 2085 | 11956 | 37006 |
| S/G/Y/R/B/O |
NT_010494 | AC106736 | 81431104 | 3 | chr16 | NT_010494 | AC010547 | 81583316 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010494 | AC106736 | 81431104 | 3 | chr16 | NT_010635 | AC009136 | 71756884 | 3 | 119886 | 0 | 0 | 119886 |
| S/G/Y/R/B/O |
NT_010494 | AC106736 | 81431104 | 3 | chr16 | NT_010635 | AC099495 | 71614469 | 3 | 48743 | 0 | 0 | 48743 |
| S/G/Y/R/B/O |
NT_010494 | AC010547 | 81583316 | 3 | chr16 | NT_010494 | AC009097 | 81760651 | 3 | 38048 | 0 | 0 | 38048 |
| S/G/Y/R/B/O |
NT_010494 | AC009097 | 81760651 | 3 | chr16 | NT_010494 | AC010653 | 81922031 | 2 | 60657 | 0 | 0 | 60657 |
| S/G/Y/R/B/O |
NT_010494 | AC010653 | 81922031 | 2 | chr16 | NT_010494 | AC005199 | 82012658 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010494 | AC005199 | 82012658 | 3 | chr16 | NT_010494 | AC009127 | 82162786 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010494 | AC005199 | 82012658 | 3 | chr16 | NT_010494 | AC024590 | 81390397 | 1 | 32523 | 0 | 1081 | 33604 |
| S/G/Y/R/B/O |
NT_010494 | AC005199 | 82012658 | 3 | chr16 | NT_010494 | AC092294 | 80786330 | 1 | 29138 | 0 | 0 | 29138 |
| S/G/Y/R/B/O |
NT_010494 | AC009127 | 82162786 | 2 | chr16 | NT_010494 | AC009087 | 82262965 | 3 | 69407 | 0 | 0 | 69407 |
| S/G/Y/R/B/O |
NT_010494 | AC009087 | 82262965 | 3 | chr16 | NT_010494 | AC004682 | 82437898 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010494 | AC009087 | 82262965 | 3 |   |   | AC009160 | 82162786 | 1 | 20862 | 2747 | 35898 | 59507 |
| S/G/Y/R/B/O |
NT_010494 | AC009087 | 82262965 | 3 |   |   | K03431 | 82162786 | 3 | 10496 | 0 | 0 | 10496 |
| S/G/Y/R/B/O |
NT_010494 | AC009087 | 82262965 | 3 |   |   | M10935 | 82162786 | 3 | 11529 | 0 | 0 | 11529 |
| S/G/Y/R/B/O |
NT_010494 | AC009087 | 82262965 | 3 |   |   | M69197 | 82162786 | 3 | 38363 | 0 | 0 | 38363 |
| S/G/Y/R/B/O |
NT_010494 | AC004682 | 82437898 | 3 | chr16 | NT_010494 | AC009075 | 82567263 | 3 | 54478 | 0 | 0 | 54478 |
| S/G/Y/R/B/O |
NT_010494 | AC004682 | 82437898 | 3 |   |   | AC009160 | 82567263 | 1 | 46070 | 2747 | 33544 | 82361 |
| S/G/Y/R/B/O |
NT_010494 | AC004682 | 82437898 | 3 |   |   | K03431 | 82567263 | 3 | 10497 | 0 | 0 | 10497 |
| S/G/Y/R/B/O |
NT_010494 | AC009075 | 82567263 | 3 | chr16 | NT_010494 | AC004158 | 82702749 | 3 | 12110 | 0 | 0 | 12110 |
| S/G/Y/R/B/O |
NT_010494 | AC009075 | 82567263 | 3 |   |   | AC012324 | 82437898 | 3 | 91690 | 0 | 0 | 91690 |
| S/G/Y/R/B/O |
NT_010494 | AC004158 | 82702749 | 3 | chr16 | NT_010494 | AC092289 | 82871183 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010494 | AC004158 | 82702749 | 3 |   |   | AC010651 | 82567263 | 3 | 139650 | 0 | 0 | 139650 |
| S/G/Y/R/B/O |
NT_010494 | AC004158 | 82702749 | 3 |   |   | AC012324 | 82567263 | 3 | 80587 | 0 | 0 | 80587 |
| S/G/Y/R/B/O |
NT_010494 | AC092289 | 82871183 | 3 | chr16 | NT_010494 | AC010748 | 82979485 | 3 | 79057 | 0 | 0 | 79057 |
| S/G/Y/R/B/O |
NT_010494 | AC092289 | 82871183 | 3 |   |   | AC010651 | 82567263 | 3 | 47126 | 0 | 0 | 47126 |
| S/G/Y/R/B/O |
NT_010494 | AC010748 | 82979485 | 3 | chr16 | NT_010494 | AC004943 | 83045880 | 3 | 0 | 0 | 200 | 200 |
| S/G/Y/R/B/O |
NT_010494 | AC004943 | 83045880 | 3 | chr16 | NT_010494 | AC002044 | 83196993 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010494 | AC002044 | 83196993 | 3 | chr16 | NT_010494 | AC008757 | 83415067 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010494 | AC002044 | 83196993 | 3 | chr16 | NT_010494 | AC116667 | 83437199 | 3 | 42113 | 0 | 0 | 42113 |
| S/G/Y/R/B/O |
NT_010494 | AC008757 | 83415067 | 3 | chr16 | NT_010494 | AC116667 | 83437199 | 3 | 56021 | 0 | 0 | 56021 |
| S/G/Y/R/B/O |
NT_010494 | AC116667 | 83437199 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010494 | AC116667 | 83437199 | 3 | chr16 | NT_010494 | AC002044 | 83196993 | 3 | 42113 | 0 | 0 | 42113 |
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