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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033291 | AC023831 | 57771879 | 1 | chr16 | NT_033291 | AC112166 | 57774797 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033291 | AC023831 | 57771879 | 1 | chr16 | NT_033291 | AC002301 | 57864676 | 3 | 12274 | 0 | 92109 | 104383 |
| S/G/Y/R/B/O |
NT_033291 | AC023831 | 57771879 | 1 | chr16 | NT_033291 | AC009086 | 57980378 | 3 | 58260 | 0 | 0 | 58260 |
| S/G/Y/R/B/O |
NT_033291 | AC023831 | 57771879 | 1 | chr16 | NT_033291 | AC009133 | 57801946 | 2 | 120089 | 0 | 0 | 120089 |
| S/G/Y/R/B/O |
NT_033291 | AC112166 | 57774797 | 2 | chr16 | NT_033291 | AC009133 | 57801946 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033291 | AC112166 | 57774797 | 2 | chr16 | NT_010589 | AC020765 | 29618763 | 1 | 11937 | 0 | 0 | 11937 |
| S/G/Y/R/B/O |
NT_033291 | AC112166 | 57774797 | 2 |   |   | AC009130 | 58763885 | 1 | 12428 | 4473 | 3615 | 20516 |
| S/G/Y/R/B/O |
NT_033291 | AC009133 | 57801946 | 2 | chr16 | NT_033291 | AC002301 | 57864676 | 3 | 12274 | 0 | 81047 | 93321 |
| S/G/Y/R/B/O |
NT_033291 | AC009133 | 57801946 | 2 | chr16 | NT_033291 | AC023831 | 57771879 | 1 | 120089 | 0 | 0 | 120089 |
| S/G/Y/R/B/O |
NT_033291 | AC002301 | 57864676 | 3 | chr16 | NT_033291 | AC009086 | 57980378 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033291 | AC002301 | 57864676 | 3 | chr16 | NT_033291 | AC023831 | 57771879 | 1 | 12274 | 0 | 92109 | 104383 |
| S/G/Y/R/B/O |
NT_033291 | AC009086 | 57980378 | 3 | chr16 | NT_033291 | AC012645 | 58155742 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033291 | AC009086 | 57980378 | 3 | chr16 | NT_010441 | AC008740 | 22688304 | 3 | 40547 | 0 | 0 | 40547 |
| S/G/Y/R/B/O |
NT_033291 | AC009086 | 57980378 | 3 | chr16 | NT_033291 | AC023831 | 57771879 | 1 | 58260 | 0 | 0 | 58260 |
| S/G/Y/R/B/O |
NT_033291 | AC009086 | 57980378 | 3 | chr16 | NT_010441 | AC106782 | 23327777 | 1 | 20519 | 0 | 32439 | 52958 |
| S/G/Y/R/B/O |
NT_033291 | AC009086 | 57980378 | 3 |   |   | AC008864 | 22688304 | 2 | 23896 | 0 | 0 | 23896 |
| S/G/Y/R/B/O |
NT_033291 | AC009086 | 57980378 | 3 |   |   | AC017077 | 22688304 | 1 | 26874 | 0 | 0 | 26874 |
| S/G/Y/R/B/O |
NT_033291 | AC009086 | 57980378 | 3 |   |   | AC022147 | 11503506 | 1 | 20800 | 0 | 7671 | 28471 |
| S/G/Y/R/B/O |
NT_033291 | AC009086 | 57980378 | 3 |   |   | AC069176 | 23453979 | 1 | 14226 | 0 | 6262 | 20488 |
| S/G/Y/R/B/O |
NT_033291 | AC009086 | 57980378 | 3 |   |   | AC106826 | 23327777 | 1 | 16953 | 0 | 0 | 16953 |
| S/G/Y/R/B/O |
NT_033291 | AC012645 | 58155742 | 3 | chr16 | NT_033291 | AC093512 | 58320384 | 3 | 26798 | 0 | 0 | 26798 |
| S/G/Y/R/B/O |
NT_033291 | AC012645 | 58155742 | 3 | chr16 | NT_010441 | AC106782 | 23327777 | 1 | 64305 | 0 | 0 | 64305 |
| S/G/Y/R/B/O |
NT_033291 | AC012645 | 58155742 | 3 |   |   | AC008864 | 23327777 | 2 | 23975 | 0 | 0 | 23975 |
| S/G/Y/R/B/O |
NT_033291 | AC012645 | 58155742 | 3 |   |   | AC069176 | 58853965 | 1 | 14200 | 0 | 4065 | 18265 |
| S/G/Y/R/B/O |
NT_033291 | AC093512 | 58320384 | 3 | chr16 | NT_033291 | AC008956 | 58477965 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033291 | AC093512 | 58320384 | 3 |   |   | AC113360 | 58155742 | 1 | 11827 | 0 | 20054 | 31881 |
| S/G/Y/R/B/O |
NT_033291 | AC008956 | 58477965 | 3 | chr16 | NT_033291 | AC007615 | 58588194 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033291 | AC008956 | 58477965 | 3 | chr16 | NT_010589 | AC002425 | 29787960 | 3 | 59812 | 0 | 0 | 59812 |
| S/G/Y/R/B/O |
NT_033291 | AC008956 | 58477965 | 3 | chr16 | NT_010589 | AC002544 | 29631319 | 3 | 91334 | 0 | 0 | 91334 |
| S/G/Y/R/B/O |
NT_033291 | AC008956 | 58477965 | 3 | chr16 | NT_010589 | AC020765 | 29618763 | 1 | 11984 | 0 | 0 | 11984 |
| S/G/Y/R/B/O |
NT_033291 | AC008956 | 58477965 | 3 | chr16 | NT_010589 | AC026411 | 29858442 | 3 | 60732 | 0 | 0 | 60732 |
| S/G/Y/R/B/O |
NT_033291 | AC008956 | 58477965 | 3 | chr16 | NT_010591 | AC116346 | 25063595 | 1 | 43279 | 0 | 2635 | 45914 |
| S/G/Y/R/B/O |
NT_033291 | AC008956 | 58477965 | 3 |   |   | X99832 | 25063595 | 3 | 15800 | 0 | 0 | 15800 |
| S/G/Y/R/B/O |
NT_033291 | AC007615 | 58588194 | 2 | chr16 | NT_033291 | AC009093 | 58763885 | 3 | 172306 | 0 | 0 | 172306 |
| S/G/Y/R/B/O |
NT_033291 | AC007615 | 58588194 | 2 |   |   | AC009130 | 58763885 | 1 | 89598 | 16416 | 32275 | 138289 |
| S/G/Y/R/B/O |
NT_033291 | AC009093 | 58763885 | 3 | chr16 | NT_033291 | AC023814 | 58792798 | 1 | 0 | 0 | 5692 | 5692 |
| S/G/Y/R/B/O |
NT_033291 | AC009093 | 58763885 | 3 |   |   | AC009130 | 58588194 | 1 | 132942 | 23748 | 19208 | 175898 |
| S/G/Y/R/B/O |
NT_033291 | AC023814 | 58792798 | 1 | chr16 | NT_033291 | AC025279 | 58853965 | 1 | 12785 | 5364 | 25457 | 43606 |
| S/G/Y/R/B/O |
NT_033291 | AC023814 | 58792798 | 1 |   |   | AC009124 | 58763885 | 2 | 10285 | 0 | 9627 | 19912 |
| S/G/Y/R/B/O |
NT_033291 | AC023814 | 58792798 | 1 |   |   | AC009130 | 58763885 | 1 | 22130 | 4176 | 3291 | 29597 |
| S/G/Y/R/B/O |
NT_033291 | AC025279 | 58853965 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033291 | AC025279 | 58853965 | 1 |   |   | AC009124 | 58763885 | 2 | 10295 | 0 | 9605 | 19900 |
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