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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010422 | AC092347 | 86395241 | 1 | chr16 | NT_010422 | AC026469 | 86443395 | 3 | 33558 | 0 | 0 | 33558 |
| S/G/Y/R/B/O |
NT_010422 | AC092347 | 86395241 | 1 | chr16 | NT_010422 | AC092341 | 86942158 | 2 | 103196 | 0 | 68443 | 171639 |
| S/G/Y/R/B/O |
NT_010422 | AC026469 | 86443395 | 3 | chr16 | NT_010422 | AC092275 | 86587666 | 2 | 16446 | 0 | 0 | 16446 |
| S/G/Y/R/B/O |
NT_010422 | AC092275 | 86587666 | 2 | chr16 | NT_010422 | AC092377 | 86729528 | 2 | 54055 | 0 | 0 | 54055 |
| S/G/Y/R/B/O |
NT_010422 | AC092275 | 86587666 | 2 | chr16 | NT_010422 | AC023264 | 86933583 | 1 | 40588 | 7147 | 352 | 48087 |
| S/G/Y/R/B/O |
NT_010422 | AC092377 | 86729528 | 2 | chr16 | NT_010422 | AC023264 | 86933583 | 1 | 130210 | 21368 | 10357 | 161935 |
| S/G/Y/R/B/O |
NT_010422 | AC023264 | 86933583 | 1 | chr16 | NT_010422 | AC092341 | 86942158 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010422 | AC023264 | 86933583 | 1 | chr16 | NT_010422 | AC092275 | 86587666 | 2 | 40588 | 7147 | 352 | 48087 |
| S/G/Y/R/B/O |
NT_010422 | AC092341 | 86942158 | 2 | chr16 | NT_010422 | AC025280 | 86950769 | 3 | 0 | 0 | 88256 | 88256 |
| S/G/Y/R/B/O |
NT_010422 | AC092341 | 86942158 | 2 | chr16 | NT_010422 | AC092347 | 86395241 | 1 | 103196 | 0 | 68443 | 171639 |
| S/G/Y/R/B/O |
NT_010422 | AC025280 | 86950769 | 3 | chr16 | NT_010422 | AC009116 | 87090919 | 3 | 34490 | 0 | 0 | 34490 |
| S/G/Y/R/B/O |
NT_010422 | AC009116 | 87090919 | 3 | chr16 | NT_010422 | AC092320 | 87263452 | 1 | 7348 | 0 | 7495 | 14843 |
| S/G/Y/R/B/O |
NT_010422 | AC009116 | 87090919 | 3 |   |   | AC019348 | 5060607 | 1 | 14311 | 5126 | 2541 | 21978 |
| S/G/Y/R/B/O |
NT_010422 | AC092320 | 87263452 | 1 | chr16 | NT_010422 | AC010732 | 87272038 | 1 | 87988 | 0 | 9729 | 97717 |
| S/G/Y/R/B/O |
NT_010422 | AC092320 | 87263452 | 1 | chr16 | NT_010422 | AC022165 | 88627587 | 3 | 74643 | 0 | 0 | 74643 |
| S/G/Y/R/B/O |
NT_010422 | AC092320 | 87263452 | 1 |   |   | AC019348 | 87272038 | 1 | 44008 | 16545 | 5789 | 66342 |
| S/G/Y/R/B/O |
NT_010422 | AC092320 | 87263452 | 1 |   |   | AC092145 | 88627587 | 1 | 72882 | 5423 | 37979 | 116284 |
| S/G/Y/R/B/O |
NT_010422 | AC010732 | 87272038 | 1 | chr16 | NT_010422 | AC098804 | 87273253 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010422 | AC010732 | 87272038 | 1 | chr16 | NT_010422 | AC022165 | 88627587 | 3 | 91710 | 0 | 15080 | 106790 |
| S/G/Y/R/B/O |
NT_010422 | AC010732 | 87272038 | 1 |   |   | AC019348 | 61011768 | 1 | 57306 | 6744 | 3709 | 67759 |
| S/G/Y/R/B/O |
NT_010422 | AC010732 | 87272038 | 1 |   |   | AC092145 | 88627587 | 1 | 32772 | 2836 | 39240 | 74848 |
| S/G/Y/R/B/O |
NT_010422 | AC098804 | 87273253 | 3 | chr16 | NT_010422 | AC087189 | 87351437 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010422 | AC087189 | 87351437 | 3 | chr16 | NT_010422 | AC009142 | 87536314 | 3 | 43284 | 0 | 0 | 43284 |
| S/G/Y/R/B/O |
NT_010422 | AC009142 | 87536314 | 3 | chr16 | NT_010422 | AC092340 | 87688887 | 3 | 58219 | 0 | 0 | 58219 |
| S/G/Y/R/B/O |
NT_010422 | AC092340 | 87688887 | 3 | chr16 | NT_010422 | AC106814 | 87777184 | 3 | 31386 | 0 | 0 | 31386 |
| S/G/Y/R/B/O |
NT_010422 | AC106814 | 87777184 | 3 | chr16 | NT_010422 | AC009063 | 87915867 | 3 | 55566 | 0 | 0 | 55566 |
| S/G/Y/R/B/O |
NT_010422 | AC009063 | 87915867 | 3 | chr16 | NT_010422 | AC012320 | 88054538 | 3 | 133762 | 0 | 0 | 133762 |
| S/G/Y/R/B/O |
NT_010422 | AC009063 | 87915867 | 3 | chr16 | NT_010422 | AC009036 | 88109983 | 3 | 75762 | 0 | 0 | 75762 |
| S/G/Y/R/B/O |
NT_010422 | AC012320 | 88054538 | 3 | chr16 | NT_010422 | AC009036 | 88109983 | 3 | 131081 | 0 | 0 | 131081 |
| S/G/Y/R/B/O |
NT_010422 | AC012320 | 88054538 | 3 | chr16 | NT_010422 | AC009119 | 88172300 | 2 | 68334 | 0 | 0 | 68334 |
| S/G/Y/R/B/O |
NT_010422 | AC009036 | 88109983 | 3 | chr16 | NT_010422 | AC009119 | 88172300 | 2 | 130278 | 0 | 0 | 130278 |
| S/G/Y/R/B/O |
NT_010422 | AC009036 | 88109983 | 3 | chr16 | NT_010422 | AC009063 | 87915867 | 3 | 75762 | 0 | 0 | 75762 |
| S/G/Y/R/B/O |
NT_010422 | AC009119 | 88172300 | 2 | chr16 | NT_010422 | AC040169 | 88222761 | 2 | 10086 | 0 | 0 | 10086 |
| S/G/Y/R/B/O |
NT_010422 | AC009119 | 88172300 | 2 | chr16 | NT_010422 | AC012320 | 88054538 | 3 | 68334 | 0 | 0 | 68334 |
| S/G/Y/R/B/O |
NT_010422 | AC009119 | 88172300 | 2 |   |   | AF334780 | 88222761 | 3 | 12175 | 0 | 0 | 12175 |
| S/G/Y/R/B/O |
NT_010422 | AC040169 | 88222761 | 2 | chr16 | NT_010422 | AC009123 | 88428297 | 3 | 15968 | 0 | 0 | 15968 |
| S/G/Y/R/B/O |
NT_010422 | AC040169 | 88222761 | 2 |   |   | AF334780 | 88428297 | 3 | 12199 | 0 | 0 | 12199 |
| S/G/Y/R/B/O |
NT_010422 | AC009123 | 88428297 | 3 | chr16 | NT_010422 | AC010551 | 88609375 | 2 | 31298 | 0 | 109898 | 141196 |
| S/G/Y/R/B/O |
NT_010422 | AC010551 | 88609375 | 2 | chr16 | NT_010422 | AC022165 | 88627587 | 3 | 31410 | 0 | 0 | 31410 |
| S/G/Y/R/B/O |
NT_010422 | AC022165 | 88627587 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010422 | AC022165 | 88627587 | 3 | chr16 | NT_010422 | AC010732 | 87272038 | 1 | 91710 | 0 | 15080 | 106790 |
| S/G/Y/R/B/O |
NT_010422 | AC022165 | 88627587 | 3 | chr16 | NT_010422 | AC092320 | 87263452 | 1 | 74643 | 0 | 0 | 74643 |
| S/G/Y/R/B/O |
NT_010422 | AC022165 | 88627587 | 3 |   |   | AC019348 | 87272038 | 1 | 61569 | 1876 | 762 | 64207 |
| S/G/Y/R/B/O |
NT_010422 | AC022165 | 88627587 | 3 |   |   | AC092145 | 87272038 | 1 | 65200 | 0 | 6284 | 71484 |
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