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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010505 | AC106819 | 47259711 | 3 | chr16 | NT_010505 | AC092368 | 47375520 | 3 | 7295 | 0 | 0 | 7295 |
| S/G/Y/R/B/O |
NT_010505 | AC092368 | 47375520 | 3 | chr16 | NT_010505 | AC012186 | 47546076 | 3 | 0 | 0 | 115323 | 115323 |
| S/G/Y/R/B/O |
NT_010505 | AC092368 | 47375520 | 3 | chr3 | NT_033033 | AC107615 | 182071934 | 1 | 134914 | 0 | 24744 | 159658 |
| S/G/Y/R/B/O |
NT_010505 | AC092368 | 47375520 | 3 |   |   | AC026963 | 47546076 | 1 | 34214 | 1984 | 3442 | 39640 |
| S/G/Y/R/B/O |
NT_010505 | AC012186 | 47546076 | 3 | chr16 | NT_010505 | AC007225 | 47592710 | 3 | 17959 | 0 | 0 | 17959 |
| S/G/Y/R/B/O |
NT_010505 | AC012186 | 47546076 | 3 | chr3 | NT_033033 | AC107615 | 182071934 | 1 | 63308 | 0 | 24744 | 88052 |
| S/G/Y/R/B/O |
NT_010505 | AC012186 | 47546076 | 3 |   |   | AC009066 | 47592710 | 2 | 14535 | 1699 | 2681 | 18915 |
| S/G/Y/R/B/O |
NT_010505 | AC012186 | 47546076 | 3 |   |   | AC026963 | 47592710 | 1 | 58163 | 3905 | 17026 | 79094 |
| S/G/Y/R/B/O |
NT_010505 | AC007225 | 47592710 | 3 | chr16 | NT_010505 | AC018845 | 47793642 | 3 | 25561 | 0 | 0 | 25561 |
| S/G/Y/R/B/O |
NT_010505 | AC007225 | 47592710 | 3 |   |   | AC009066 | 182071934 | 2 | 131798 | 7762 | 4453 | 144013 |
| S/G/Y/R/B/O |
NT_010505 | AC007225 | 47592710 | 3 |   |   | AC026963 | 47793642 | 1 | 72539 | 3339 | 6750 | 82628 |
| S/G/Y/R/B/O |
NT_010505 | AC018845 | 47793642 | 3 | chr16 | NT_010505 | AC007338 | 47944262 | 3 | 124698 | 0 | 0 | 124698 |
| S/G/Y/R/B/O |
NT_010505 | AC007338 | 47944262 | 3 | chr16 | NT_010505 | AC007494 | 48004829 | 3 | 13506 | 0 | 0 | 13506 |
| S/G/Y/R/B/O |
NT_010505 | AC007494 | 48004829 | 3 | chr16 | NT_010505 | AC007533 | 48197436 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010505 | AC007494 | 48004829 | 3 |   |   | AC027467 | 47944262 | 1 | 185070 | 0 | 6772 | 191842 |
| S/G/Y/R/B/O |
NT_010505 | AC007494 | 48004829 | 3 |   |   | AC027470 | 47944262 | 1 | 76702 | 11557 | 8687 | 96946 |
| S/G/Y/R/B/O |
NT_010505 | AC007533 | 48197436 | 3 | chr16 | NT_010505 | AC007599 | 48343987 | 3 | 45736 | 0 | 0 | 45736 |
| S/G/Y/R/B/O |
NT_010505 | AC007533 | 48197436 | 3 |   |   | AC027470 | 48343987 | 1 | 40079 | 2409 | 0 | 42488 |
| S/G/Y/R/B/O |
NT_010505 | AC007599 | 48343987 | 3 | chr16 | NT_010505 | AC092374 | 48480356 | 3 | 11569 | 0 | 0 | 11569 |
| S/G/Y/R/B/O |
NT_010505 | AC007599 | 48343987 | 3 |   |   | Y15155 | 48480356 | 3 | 17865 | 0 | 0 | 17865 |
| S/G/Y/R/B/O |
NT_010505 | AC092374 | 48480356 | 3 | chr16 | NT_010505 | AC092721 | 48619750 | 3 | 99229 | 0 | 0 | 99229 |
| S/G/Y/R/B/O |
NT_010505 | AC092721 | 48619750 | 3 | chr16 | NT_010505 | AC023820 | 48721896 | 3 | 99789 | 0 | 0 | 99789 |
| S/G/Y/R/B/O |
NT_010505 | AC023820 | 48721896 | 3 | chr16 | NT_010505 | AC023813 | 48755742 | 1 | 0 | 0 | 2015 | 2015 |
| S/G/Y/R/B/O |
NT_010505 | AC023813 | 48755742 | 1 | chr16 | NT_010505 | AC007611 | 48782179 | 3 | 2706 | 0 | 0 | 2706 |
| S/G/Y/R/B/O |
NT_010505 | AC023813 | 48755742 | 1 | chr16 | NT_010505 | AC026470 | 50246721 | 3 | 34588 | 2111 | 33752 | 70451 |
| S/G/Y/R/B/O |
NT_010505 | AC007611 | 48782179 | 3 | chr16 | NT_010505 | AC023827 | 48941137 | 3 | 93100 | 0 | 0 | 93100 |
| S/G/Y/R/B/O |
NT_010505 | AC023827 | 48941137 | 3 | chr16 | NT_010505 | AC007500 | 49000839 | 3 | 57678 | 0 | 0 | 57678 |
| S/G/Y/R/B/O |
NT_010505 | AC007500 | 49000839 | 3 | chr16 | NT_010505 | AC007502 | 49162085 | 3 | 25262 | 0 | 0 | 25262 |
| S/G/Y/R/B/O |
NT_010505 | AC007500 | 49000839 | 3 |   |   | AC092293 | 48941137 | 1 | 16770 | 0 | 0 | 16770 |
| S/G/Y/R/B/O |
NT_010505 | AC007502 | 49162085 | 3 | chr16 | NT_010505 | AC044798 | 49295495 | 2 | 37012 | 0 | 0 | 37012 |
| S/G/Y/R/B/O |
NT_010505 | AC007502 | 49162085 | 3 |   |   | AC092293 | 49295495 | 1 | 68811 | 0 | 36254 | 105065 |
| S/G/Y/R/B/O |
NT_010505 | AC044798 | 49295495 | 2 | chr16 | NT_010505 | AC012311 | 49338581 | 1 | 76581 | 0 | 0 | 76581 |
| S/G/Y/R/B/O |
NT_010505 | AC044798 | 49295495 | 2 | chr16 | NT_010505 | AC007614 | 49429822 | 3 | 51392 | 0 | 0 | 51392 |
| S/G/Y/R/B/O |
NT_010505 | AC044798 | 49295495 | 2 |   |   | AC092293 | 49338581 | 1 | 16406 | 1938 | 0 | 18344 |
| S/G/Y/R/B/O |
NT_010505 | AC012311 | 49338581 | 1 | chr16 | NT_010505 | AC007614 | 49429822 | 3 | 65756 | 0 | 56054 | 121810 |
| S/G/Y/R/B/O |
NT_010505 | AC012311 | 49338581 | 1 | chr16 | NT_010505 | AC007861 | 49503496 | 2 | 21590 | 0 | 0 | 21590 |
| S/G/Y/R/B/O |
NT_010505 | AC007614 | 49429822 | 3 | chr16 | NT_010505 | AC007861 | 49503496 | 2 | 67260 | 0 | 0 | 67260 |
| S/G/Y/R/B/O |
NT_010505 | AC007614 | 49429822 | 3 | chr16 | NT_010505 | AC009083 | 49617851 | 1 | 63771 | 1759 | 38112 | 103642 |
| S/G/Y/R/B/O |
NT_010505 | AC007614 | 49429822 | 3 | chr16 | NT_010505 | AC044798 | 49295495 | 2 | 51392 | 0 | 0 | 51392 |
| S/G/Y/R/B/O |
NT_010505 | AC007861 | 49503496 | 2 | chr16 | NT_010505 | AC009083 | 49617851 | 1 | 92651 | 0 | 26178 | 118829 |
| S/G/Y/R/B/O |
NT_010505 | AC007861 | 49503496 | 2 | chr16 | NT_010505 | AC007607 | 49658843 | 3 | 46307 | 0 | 0 | 46307 |
| S/G/Y/R/B/O |
NT_010505 | AC007861 | 49503496 | 2 | chr16 | NT_010505 | AC012311 | 49338581 | 1 | 21590 | 0 | 0 | 21590 |
| S/G/Y/R/B/O |
NT_010505 | AC009083 | 49617851 | 1 | chr16 | NT_010505 | AC007607 | 49658843 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010505 | AC009083 | 49617851 | 1 | chr16 | NT_010505 | AC007614 | 49429822 | 3 | 63771 | 1759 | 38112 | 103642 |
| S/G/Y/R/B/O |
NT_010505 | AC007607 | 49658843 | 3 | chr16 | NT_010505 | AC007339 | 49817752 | 3 | 34164 | 0 | 0 | 34164 |
| S/G/Y/R/B/O |
NT_010505 | AC007607 | 49658843 | 3 | chr16 | NT_010505 | AC007861 | 49503496 | 2 | 46307 | 0 | 0 | 46307 |
| S/G/Y/R/B/O |
NT_010505 | AC007339 | 49817752 | 3 | chr16 | NT_010505 | AC027348 | 49967154 | 3 | 100447 | 0 | 0 | 100447 |
| S/G/Y/R/B/O |
NT_010505 | AC027348 | 49967154 | 3 | chr16 | NT_010505 | AC007603 | 50014001 | 3 | 27429 | 0 | 0 | 27429 |
| S/G/Y/R/B/O |
NT_010505 | AC007603 | 50014001 | 3 | chr16 | NT_010505 | AC007610 | 50183448 | 2 | 24728 | 0 | 0 | 24728 |
| S/G/Y/R/B/O |
NT_010505 | AC007610 | 50183448 | 2 | chr16 | NT_010505 | AC026470 | 50246721 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010505 | AC007610 | 50183448 | 2 | chr16 | NT_010505 | AC007597 | 51051639 | 3 | 75788 | 0 | 0 | 75788 |
| S/G/Y/R/B/O |
NT_010505 | AC026470 | 50246721 | 3 | chr16 | NT_010505 | AC023818 | 50379928 | 2 | 0 | 1748 | 0 | 1748 |
| S/G/Y/R/B/O |
NT_010505 | AC026470 | 50246721 | 3 | chr16 | NT_010505 | AC023813 | 48755742 | 1 | 34588 | 2111 | 33752 | 70451 |
| S/G/Y/R/B/O |
NT_010505 | AC023818 | 50379928 | 2 | chr16 | NT_010505 | AC007600 | 50559828 | 3 | 0 | 1513 | 0 | 1513 |
| S/G/Y/R/B/O |
NT_010505 | AC007600 | 50559828 | 3 | chr16 | NT_010505 | AC096996 | 50608867 | 3 | 134032 | 0 | 0 | 134032 |
| S/G/Y/R/B/O |
NT_010505 | AC007600 | 50559828 | 3 |   |   | AC013298 | 50246721 | 1 | 120259 | 0 | 1337 | 121596 |
| S/G/Y/R/B/O |
NT_010505 | AC007600 | 50559828 | 3 |   |   | AC068680 | 50379928 | 1 | 72009 | 0 | 0 | 72009 |
| S/G/Y/R/B/O |
NT_010505 | AC096996 | 50608867 | 3 | chr16 | NT_010505 | AC007459 | 50747793 | 3 | 40898 | 0 | 0 | 40898 |
| S/G/Y/R/B/O |
NT_010505 | AC096996 | 50608867 | 3 | chr16 | NT_010505 | AC007013 | 50782591 | 3 | 20898 | 0 | 0 | 20898 |
| S/G/Y/R/B/O |
NT_010505 | AC096996 | 50608867 | 3 |   |   | AC013298 | 50559828 | 1 | 182553 | 5100 | 1337 | 188990 |
| S/G/Y/R/B/O |
NT_010505 | AC096996 | 50608867 | 3 |   |   | AC068680 | 50559828 | 1 | 144064 | 1371 | 0 | 145435 |
| S/G/Y/R/B/O |
NT_010505 | AC007459 | 50747793 | 3 | chr16 | NT_010505 | AC007013 | 50782591 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010505 | AC007459 | 50747793 | 3 |   |   | AC013298 | 50559828 | 1 | 34967 | 5099 | 0 | 40066 |
| S/G/Y/R/B/O |
NT_010505 | AC007459 | 50747793 | 3 |   |   | AC068680 | 50559828 | 1 | 19817 | 0 | 0 | 19817 |
| S/G/Y/R/B/O |
NT_010505 | AC007013 | 50782591 | 3 | chr16 | NT_010505 | AC007857 | 50803649 | 3 | 15455 | 0 | 0 | 15455 |
| S/G/Y/R/B/O |
NT_010505 | AC007013 | 50782591 | 3 | chr16 | NT_010505 | AC096996 | 50608867 | 3 | 20898 | 0 | 0 | 20898 |
| S/G/Y/R/B/O |
NT_010505 | AC007013 | 50782591 | 3 |   |   | AC013298 | 50803649 | 1 | 15259 | 2157 | 0 | 17416 |
| S/G/Y/R/B/O |
NT_010505 | AC007013 | 50782591 | 3 |   |   | AC068680 | 50803649 | 1 | 16981 | 0 | 0 | 16981 |
| S/G/Y/R/B/O |
NT_010505 | AC007857 | 50803649 | 3 | chr16 | NT_010505 | AC007597 | 51051639 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010505 | AC007857 | 50803649 | 3 |   |   | AC068680 | 50782591 | 1 | 30182 | 0 | 1204 | 31386 |
| S/G/Y/R/B/O |
NT_010505 | AC007597 | 51051639 | 3 | chr16 | NT_010505 | AC023826 | 51244453 | 3 | 75154 | 0 | 0 | 75154 |
| S/G/Y/R/B/O |
NT_010505 | AC007597 | 51051639 | 3 | chr16 | NT_010505 | AC007610 | 50183448 | 2 | 75788 | 0 | 0 | 75788 |
| S/G/Y/R/B/O |
NT_010505 | AC023826 | 51244453 | 3 |   |   |   |   |   |   |   |   |   |
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