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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_034002 | AC106738 | 55698525 | 1 | chr16 | NT_034002 | AC106742 | 55732552 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_034002 | AC106738 | 55698525 | 1 | chr16 | NT_034002 | AC109136 | 55990300 | 3 | 31057 | 2735 | 12848 | 46640 |
| S/G/Y/R/B/O |
NT_034002 | AC106742 | 55732552 | 3 | chr16 | NT_034002 | AC108084 | 55877560 | 3 | 80431 | 0 | 0 | 80431 |
| S/G/Y/R/B/O |
NT_034002 | AC106742 | 55732552 | 3 |   |   | AC112640 | 55877560 | 3 | 27603 | 0 | 0 | 27603 |
| S/G/Y/R/B/O |
NT_034002 | AC108084 | 55877560 | 3 | chr16 | NT_034002 | AC109136 | 55990300 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_034002 | AC109136 | 55990300 | 3 | chr16 | NT_034002 | AC109462 | 56173380 | 3 | 23975 | 0 | 0 | 23975 |
| S/G/Y/R/B/O |
NT_034002 | AC109136 | 55990300 | 3 | chr16 | NT_034002 | AC106738 | 55698525 | 1 | 31057 | 2735 | 12848 | 46640 |
| S/G/Y/R/B/O |
NT_034002 | AC109462 | 56173380 | 3 | chr16 | NT_034002 | AC092722 | 56323541 | 3 | 131081 | 0 | 0 | 131081 |
| S/G/Y/R/B/O |
NT_034002 | AC109462 | 56173380 | 3 |   |   | AC009165 | 56173380 | 3 | 124598 | 0 | 0 | 124598 |
| S/G/Y/R/B/O |
NT_034002 | AC092722 | 56323541 | 3 | chr16 | NT_034002 | AC007336 | 56382207 | 3 | 31372 | 0 | 0 | 31372 |
| S/G/Y/R/B/O |
NT_034002 | AC092722 | 56323541 | 3 |   |   | AC009165 | 56382207 | 3 | 151848 | 0 | 0 | 151848 |
| S/G/Y/R/B/O |
NT_034002 | AC092722 | 56323541 | 3 |   |   | AC012345 | 56382207 | 1 | 39655 | 0 | 2113 | 41768 |
| S/G/Y/R/B/O |
NT_034002 | AC007336 | 56382207 | 3 | chr16 | NT_034002 | AC026802 | 56544782 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_034002 | AC007336 | 56382207 | 3 |   |   | AC012345 | 56173380 | 1 | 134670 | 3837 | 1884 | 140391 |
| S/G/Y/R/B/O |
NT_034002 | AC007336 | 56382207 | 3 |   |   | AC092352 | 56173380 | 3 | 151605 | 0 | 0 | 151605 |
| S/G/Y/R/B/O |
NT_034002 | AC026802 | 56544782 | 2 | chr16 | NT_034002 | AC007602 | 56602948 | 2 | 76014 | 0 | 0 | 76014 |
| S/G/Y/R/B/O |
NT_034002 | AC007602 | 56602948 | 2 | chr16 | NT_034002 | AC020766 | 56763912 | 2 | 22483 | 0 | 0 | 22483 |
| S/G/Y/R/B/O |
NT_034002 | AC020766 | 56763912 | 2 | chr16 | NT_034002 | AC040168 | 56875049 | 1 | 7288 | 0 | 0 | 7288 |
| S/G/Y/R/B/O |
NT_034002 | AC020766 | 56763912 | 2 |   |   | AC007335 | 56544782 | 3 | 115564 | 0 | 0 | 115564 |
| S/G/Y/R/B/O |
NT_034002 | AC040168 | 56875049 | 1 | chr16 | NT_034002 | AC007495 | 56901203 | 3 | 83080 | 0 | 7429 | 90509 |
| S/G/Y/R/B/O |
NT_034002 | AC040168 | 56875049 | 1 |   |   | AC007335 | 56875049 | 3 | 26154 | 0 | 0 | 26154 |
| S/G/Y/R/B/O |
NT_034002 | AC040168 | 56875049 | 1 |   |   | AC018605 | 56901203 | 1 | 47110 | 2472 | 1458 | 51040 |
| S/G/Y/R/B/O |
NT_034002 | AC007495 | 56901203 | 3 | chr16 | NT_034002 | AC079411 | 57086029 | 2 | 15068 | 0 | 0 | 15068 |
| S/G/Y/R/B/O |
NT_034002 | AC007495 | 56901203 | 3 |   |   | AC018605 | 56763912 | 1 | 150606 | 2469 | 0 | 153075 |
| S/G/Y/R/B/O |
NT_034002 | AC079411 | 57086029 | 2 | chr16 | NT_034002 | AC022161 | 57138355 | 3 | 70858 | 0 | 0 | 70858 |
| S/G/Y/R/B/O |
NT_034002 | AC079411 | 57086029 | 2 | chr16 | NT_034002 | AC009102 | 57319896 | 3 | 52261 | 0 | 0 | 52261 |
| S/G/Y/R/B/O |
NT_034002 | AC079411 | 57086029 | 2 |   |   | AC018605 | 57319896 | 1 | 30363 | 0 | 0 | 30363 |
| S/G/Y/R/B/O |
NT_034002 | AC022161 | 57138355 | 3 | chr16 | NT_034002 | AC009102 | 57319896 | 3 | 162938 | 0 | 0 | 162938 |
| S/G/Y/R/B/O |
NT_034002 | AC022161 | 57138355 | 3 | chr16 | NT_034002 | AC092140 | 57347347 | 2 | 70564 | 0 | 0 | 70564 |
| S/G/Y/R/B/O |
NT_034002 | AC022161 | 57138355 | 3 |   |   | AC016084 | 57319896 | 1 | 71752 | 0 | 0 | 71752 |
| S/G/Y/R/B/O |
NT_034002 | AC009102 | 57319896 | 3 | chr16 | NT_034002 | AC092140 | 57347347 | 2 | 98007 | 0 | 0 | 98007 |
| S/G/Y/R/B/O |
NT_034002 | AC009102 | 57319896 | 3 | chr16 | NT_034002 | AC079411 | 57086029 | 2 | 52261 | 0 | 0 | 52261 |
| S/G/Y/R/B/O |
NT_034002 | AC009102 | 57319896 | 3 |   |   | AC016084 | 57347347 | 1 | 132302 | 9272 | 0 | 141574 |
| S/G/Y/R/B/O |
NT_034002 | AC092140 | 57347347 | 2 | chr16 | NT_034002 | AC009155 | 57406850 | 3 | 37011 | 0 | 0 | 37011 |
| S/G/Y/R/B/O |
NT_034002 | AC092140 | 57347347 | 2 | chr16 | NT_034002 | AC022161 | 57138355 | 3 | 70564 | 0 | 0 | 70564 |
| S/G/Y/R/B/O |
NT_034002 | AC092140 | 57347347 | 2 |   |   | AC016084 | 57406850 | 1 | 112361 | 9272 | 0 | 121633 |
| S/G/Y/R/B/O |
NT_034002 | AC009155 | 57406850 | 3 | chr16 | NT_034002 | AC026461 | 57550710 | 3 | 86986 | 0 | 0 | 86986 |
| S/G/Y/R/B/O |
NT_034002 | AC026461 | 57550710 | 3 | chr16 | NT_034002 | AC106779 | 57631478 | 3 | 67782 | 0 | 0 | 67782 |
| S/G/Y/R/B/O |
NT_034002 | AC106779 | 57631478 | 3 |   |   |   |   |   |   |   |   |   |
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